These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10911#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1000 fasta sequence [TCCCCCTCTCCCTCTCCCTTGCTCTCTCTTCTTTAACCTGTTTATATTTATCTCCCCCTCTCCGTCTCGCCGTCTCTCAGCTCTCTCTGCTACTCCTCCTAGCTGCATGCTAAGCTAAATCTTCTGTTGGATTGCCTAGCTTTGCTGCTTTGCTTGCTTGCTGTGGTGTGGTGTGGTGTGAATTTTGTTGATTGGTCGGAGCTTGGGGTTGTGTATGGTGGTGGTGGTGTGGTAGCTAGTAGCTGCTAGTGCTAGATGGTCGCAGGGGCGTTGGGGTACATGGCGAGAGCGGCGGACGGCGGCAGGGCGGCGGA-CTCGTCACCAGGGATTTCCTCGGCGGCTGCGTCG-CGCCGACGACGCCAGGGACGCCGCCGCCGCCGCAGCAGCAACTGCCAGGCACGACTCCGTGTCCGGCAAGCTGTCCCTGCAGAAGCAGACGTGCCCGGCGACGCCGACAGACCTCAACCTCTTCCCCGTCCCCGGCGCCGCCGCGTCCGCCGCCAAGCCGTGCCCGTCGTCTACGGCGGCGGCGGCCTCCGGCGCAGGCGGCACCACGACGACGACGACGACGTACCACAGCGTGTGCACGATCGAGAAGGTGAAGACGGCGCTGGAGCGGTTCGAGCGCGGCAAGCACCAGCACCACCAGCACCAGCAGCACAGCGCCGGCGCGTCCCCGTCGTCGTCGTCCGTCACCACCTCCTCCGTGAAGCGCCGGCGCCGAAGAAGAAGCCCCGGATCGACCTCAACGTGGGGTTCCTCGGCACCTAGCTTTCCTACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCCATAGCTAGCTAGCCAGCCATGCCCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAGAACACGAGGATGATCATGACGATGATGATGATGATACTAGTAGTCCTAGCTCCACTATGTAATTGATCAAAAAGCATTTTCGCCCTTAAATCAACTTTTC] [+] EMBL AK109543 [TCCCCCTCTCCCTCTCCCTTGCTCTCTCTTCTTTAACCTGTTTATATTTATCTCCCCCTCTCCGTCTCGCCGTCTCTCAGCTCTCTCTGCTACTCCTCCTAGCTGCATGCTAAGCTAAATCTTCTGTTGGATTGCCTAGCTTTGCTGCTTTGCTTGCTTGCTGTGGTGTGGTGTGGTGTGAATTTTGTTGATTGGTCGGAGCTTGGGGTTGTGTATGGTGGTGGTGGTGTGGTAGCTAGTAGCTGCTAGTGCTAGATGGTCGCAGGGGCGTTGGGGTACATGGCGAGAGCGGCGGACGGCGGCAGGGCGGCGGAGCTCGTCACCAGGGATTTCCTCGGCGGCTGCGTCGCCGCCGACGACGCCAGGGACGCCGCCGCCGCCGCAGCAGCAACTGCCAGGCACGACTCCGTGTCCGGCAAGCTGTCCCTGCAGAAGCAGACGTGCCCGGCGACGCCGACAGACCTCAACCTCTTCCCCGTCCCCGGCGCCGCCGCGTCCGCCGCCAAGCCGTGCCCGTCGTCTACGGCGGCGGCGGCCTCCGGCGCAGGCGGCACCACGACGACGACGACGACGTACCACAGCGTGTGCACGATCGAGAAGGTGAAGACGGCGCTGGAGCGGTTCGAGCGCGGCAAGCACCAGCACCACCAGCACCAGCAGCACAGCGCCGGCGCGTCCCCGTCGTCGTCGTCCGTCACCACCTCCTCCGTGAAGCGCCGGCGCCGAAGAAGAAGCCCCGGATCGACCTCAACGTGGGGTTCCTCGGCACCTAGCTTTCCTACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCCATAGCTAGCTAGCCAGCCATGCCCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAGAACACGAGGATGATCATGACGATGATGATGATGATACTAGTAGTCCTAGCTCCACTATGTAATTGATCAAAAAGCATTTTCGCCCTTAAATCAACTTTTC] [+] EMBL C74416 [ CCCCTCTCCGTCTCGCCGTCTCTCAGCTCTCTCTGCTACTCCTCCTAGCTGCATGCTAAGCTAAATCTTCTGTTGGATTGCCTAGCTTTGCTGCTTTGCTTGCTTGCTGTGGTGTGGTGTGGTGTGAATTTTGTTGATTGGTCGGAGCTTGGGGTTGTGTATGGTGGTGGTGGTGTGGTAGCTAGTAGCTGCTAGTGCTAGATGGTCGCAGGGGCGTTGGGGTACATGGCGAGACCGGCGGACGGCGGCAGGGCGGCGGA CTCGTCACCAGGGATTTCCTCGGCGGCTGCGTCG CGCCGACGACGCCAGGGACGCCGCCGCCGCCGNA CAGCAACTG CAAGCACGACTCCGTGTCCGGCAAGCTGTCCCTGCAGAA CAGACGTGCCCGGCGACNC ACAGACCTCAA CTCTT CCCGT CCCGGCGCC ] [+] EMBL C72489 [ GCATGCTAAGCTAAATCTTCTGTTGGATTGCCTAGCTTTGCTGCTTTGCTTGCTTGCTGTGGTGTGGTGTGGTGTGAATTTTGTTGATTGGTCGGAGCTTGGGGTTGTGTATGGTGGTGGTGGTGTGGTAGCTAGTAGCTGCTAGTGCTAGATGGTCGCAGGGGCGTTGGGGTACATGGCGAGAGCGGCGGACGGCGGCAGGGCGGCGGA NTCGTCACCAGGGATTTCCTCGGCGGCTGCGTCG CGCCGACGACGCCAGG ] consensusID : consensus_10911#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 486 fasta sequence [AAGCCCCCGTGCGGCGTCGGCTTCGGCGACGGCGCGGTGGACCAGGCGACGGTGCGACTC-CCGTCC-CGGC-GGC-GCGGC-GCATGGTGGCCGCCGCGTGCCCGAGGTGCTTCCTGTACGTGCTCATCTCCCGGTCGGACCCGCGGTGCCCGCGGTGCGAGTCGCACGTGCCGCCGCCGCCGTCGCCGGCGCCGAA-GAAGAAGCCCCGGATCGACCTCAACGTGGGGTTCCTCGGCACCTAGCTTTCCTACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCCATAGCTAGCTAGCCA-GCCATGC-CCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAGAACACGAGGATGATCATGACGATGATGATGATGATACTAGTAGTCCTAGCTCCACTATGTAATTGATC-AAAAGCATTTTCGCCCTTAAATCAACTTTTCCATTTTTGTCTTCAAAAAA] [+] EMBL BI807944 [AAGCCCCCGTGCGGCGTCGGCTTCGGCGACGGCGCGGTGGACCAGGCGACGGTGCGACTC CCGTCC CGGC GGC GCGGC GCATGGT GCC CCGCGTGCCCGAGGTGCTTCCTGTACGTGCTCATCTCCCGGTCGGACCCGCGGTGCCC CGGTGCGAGTCGCACGTGCCGCCGCCGCCGTCGCCGGCGCCGAA GAAGAAGCCCCGGATCGACCTCAACGTGGGGTTCCTCGGCACCTAGCTTTCCTACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCCATAGCTAGCTAGCCA GCCATGC CCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAGAACACGAGGATGATCATGACGATGATGATGATGATACTAGTAGTCCTAGCTCCACTATGTAATTGATC AAAAGCATTTTCGCCCTTAAATCAACTTTTCCATTTTTGTCTTCAAAAAA] [+] EMBL BI797198 [ GCGACTCGCCGTCCGCGGCGGGCGGCGGCGGCATGGTGGCCGCCGCGTGCCCGAGGTGCTTCCTGTACGTGCTCATCTCCCGGTCGGACCCGCGGTGCCCGCGGTGCGAGTCGCACGTGCCGCCGCCGCCGTCGCCGGCGCCGAACGAAGAAGCCCCGGATCGACCTC ACGTGGGGTTCCTCGGCACCTAGCTTTCCTACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCCATAGCTAGCTAGCCA GCCATGC CCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTAaaaa ] [+] EMBL AU172820 [ c gGGC GGC G GCG GCATGGTGGCCGCCGCGTGCCCGAGGTGCTTCCTGTACGTGCTCATCTCCCGGTCGGACCCGCGGTGCCCNCGGTGCGAGTCGCACGTGCCGCCGCCGCCGTCGCCGGCGCCGAA GAAGAAGCCCCGGATCGACCTCAACGTGGGGTTCCTCGGCACCTAGCTTTCCTACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCCATAGCTAGCTAGCCA GCCATGC CCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAGAACACGAGGATGATCATGACGATGATGATGATGATACTAGTAGTCCTAGCTCCACTATGTAATTGATCAAAAAGCATTTTCGCCCTTAAATCAACTTTTCCATTTTTGTCTTCAAAAAA] [+] EMBL BI810001 [ GACACATGTGACTAGCCATAGCTAGCTAGCCATGCCATGCACCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAG ACACGAGGATGATCATGACGATGATGATGATGATACTAGTAGTCCTAGCTCCACTATGTAATTGATC AAAA CATTTTCGCCCTTAAAaaaaaaa ] consensusID : consensus_10911#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [CCCGGGGGGGGGTTTTTGNAGGGCNNGGGGAAAAGGGAAAGNTTTAATTTCCCTTTCNGGGGGGGGGGGGGGATGGGCCCCCNCGNGCCCNAGGNGGTTTTNCGNAAAGGTTTNTTTTTCCGTTGNAACCCNGGGGCCCCNGGGGNGGGGTTNAAAANGCCCCCCCCCCCCTTTTCCCGGGCCGGNGAAGANCCCCCGTTTGAACTTTAAAGGGGGTTTCTTGGAACTNAGTTTNCAACCCTACCTTTANCNGGATTGCCAAGGGNGACACATGTGACTAGCCATAGCTAGCTAGCCAGCCATGCCCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAGAACACGAGGATGATCATGACGATGATGATGATGATATTAGTATTCCTAGTTCCACTATGTAATTGATCAAAAAGCATTTTCGCCCTTAAATCAACTTTTCCATTTTTGTCAAAAAAAAAAA] [+] EMBL AA753410 [CCCGGGGGGGGGTTTTTGNAGGGCNNGGGGAAAAGGGAAAGNTTTAATTTCCCTTTCNGGGGGGGGGGGGGGATGGGCCCCCNCGNGCCCNAGGNGGTTTTNCGNAAAGGTTTNTTTTTCCGTTGNAACCCNGGGGCCCCNGGGGNGGGGTTNAAAANGCCCCCCCCCCCCTTTTCCCGGGCCGGNGAAGANCCCCCGTTTGAACTTTAAAGGGGGTTTCTTGGAACTNAGTTTNCAACCCTACCTTTANCNGGATTGCCAAGGGNGACACATGTGACTAGCCATAGCTAGCTAGCCAGCCATGCCCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAGAACACGAGGATGATCATGACGATGATGATGATGATATTAGTATTCCTAGTTCCACTATGTAATTGATCAAAAAGCATTTTCGCCCTTAAATCAACTTTTCCATTTTTGTCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10911#1 ------------------------------------------------------------ consensus_10911#2 ------------------------------------------------------------ consensus_10911#0 TCCCCCTCTCCCTCTCCCTTGCTCTCTCTTCTTTAACCTGTTTATATTTATCTCCCCCTC 60 consensus_10911#1 ------------------------------------------------------------ consensus_10911#2 ------------------------------------------------------------ consensus_10911#0 TCCGTCTCGCCGTCTCTCAGCTCTCTCTGCTACTCCTCCTAGCTGCATGCTAAGCTAAAT 120 consensus_10911#1 ------------------------------------------------------------ consensus_10911#2 ------------------------------------------------------------ consensus_10911#0 CTTCTGTTGGATTGCCTAGCTTTGCTGCTTTGCTTGCTTGCTGTGGTGTGGTGTGGTGTG 180 consensus_10911#1 ------------------------------------------------------------ consensus_10911#2 ------------------------------------------------------------ consensus_10911#0 AATTTTGTTGATTGGTCGGAGCTTGGGGTTGTGTATGGTGGTGGTGGTGTGGTAGCTAGT 240 consensus_10911#1 ------------------------------------------------------------ consensus_10911#2 ------------------------------------------------------------ consensus_10911#0 AGCTGCTAGTGCTAGATGGTCGCAGGGGCGTTGGGGTACATGGCGAGAGCGGCGGACGGC 300 consensus_10911#1 ------------------------------------------------------------ consensus_10911#2 ------------------------------------------------------------ consensus_10911#0 GGCAGGGCGGCGGACTCGTCACCAGGGATTTCCTCGGCGGCTGCGTCGCGCCGACGACGC 360 consensus_10911#1 ------------------------------------------------------------ consensus_10911#2 ------------------------------------------------------------ consensus_10911#0 CAGGGACGCCGCCGCCGCCGCAGCAGCAACTGCCAGGCACGACTCCGTGTCCGGCAAGCT 420 consensus_10911#1 ------------------------------------------------------------ consensus_10911#2 ------------------------------------------------------------ consensus_10911#0 GTCCCTGCAGAAGCAGACGTGCCCGGCGACGCCGACAGACCTCAACCTCTTCCCCGTCCC 480 consensus_10911#1 ---------------------------------------------AAGCCCCCGTGCGGC 15 consensus_10911#2 ------------------------------------------------------CCCGGG 6 consensus_10911#0 CGGCGCCGCCGCGTCCGCCGCCAAGCCGTGCCCGTCGTCTACGGCGGCGGCGGCCTCCGG 540 * * consensus_10911#1 GTCGGCTTCGGCGACGGCGCGGTGGACCAGGCGACGGTGCGACTCCCGTCCCGGCGGCGC 75 consensus_10911#2 GGGGGGTTTTTGNAGGGCNNGG-GGAAAAGGGAAAGNTTTAATTTCCCTTTCNGGGGGGG 65 consensus_10911#0 CGCAGGCGGCACCACGACGACGACGACGACGTACCACAGCGTGTGCACGATCGAGAAGGT 600 * * * * * ** * * * * * * consensus_10911#1 GGCGCATG---GTGGCCGCCGCGTGCCCGAGGTG-CTTCCTGTACGTGCTCATCTCCCGG 131 consensus_10911#2 GGGGGGGA---TGGGCCCCCNCGNGCCCNAGGNGGTTTTNCGNAAAGGTTTNTTTTTCCG 122 consensus_10911#0 GAAGACGGCGCTGGAGCGGTTCGAGCGCGGCAAG---CACCAGCACCACCAGCACCAGCA 657 * * * * ** ** * * consensus_10911#1 TCGGACCCGCGGTGCCCGCGGTGCGAG--TCGCACGTGCCGCCGCCGCCGT----CGCCG 185 consensus_10911#2 TTGNAACCCNGGGGCCCCNGGGGNGGGGTTNAAAANGCCCCCCCCCCCCTT----TTCCC 178 consensus_10911#0 GCACAGCGCCGGCGCGTCCCCGTCGTCGTCGTCCGTCACCACCTCCTCCGTGAAGCGCCG 717 * * ** ** * ** ** ** ** * ** consensus_10911#1 GCGCCGAAGAAGAAGCCCCGGATCGACCTCAACGTGGGGTTCCTCGGCACCTAGCTTTCC 245 consensus_10911#2 GGGCCGGNGAAGANCCCCCGTTTGAACTTTAAAG-GGGGTTTCTTGGAACTNAG-TTTNC 236 consensus_10911#0 GCGCCGAAGAAGAAGCCCCGGATCGACCTCAACGTGGGGTTCCTCGGCACCTAGCTTTCC 777 * **** ***** ***** * ** * ** * ****** ** ** ** ** *** * consensus_10911#1 TACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCCATAGCTAGCTAGC 305 consensus_10911#2 AACCCTACCTTTANCNGGATTGCCAAGGGNGACACATGTGACTAGCCATAGCTAGCTAGC 296 consensus_10911#0 TACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCCATAGCTAGCTAGC 837 ********** * * * ** **** ** ****************************** consensus_10911#1 CAGCCATGCCCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCA 365 consensus_10911#2 CAGCCATGCCCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCA 356 consensus_10911#0 CAGCCATGCCCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCA 897 ************************************************************ consensus_10911#1 TAGAACACGAGGATGATCATGACGATGATGATGATGATACTAGTAGTCCTAGCTCCACTA 425 consensus_10911#2 TAGAACACGAGGATGATCATGACGATGATGATGATGATATTAGTATTCCTAGTTCCACTA 416 consensus_10911#0 TAGAACACGAGGATGATCATGACGATGATGATGATGATACTAGTAGTCCTAGCTCCACTA 957 *************************************** ***** ****** ******* consensus_10911#1 TGTAATTGATCAAAA-GCATTTTCGCCCTTAAATCAACTTTTCCATTTTTGTCTTCAAAA 484 consensus_10911#2 TGTAATTGATCAAAAAGCATTTTCGCCCTTAAATCAACTTTTCCATTTTTGTCAAAAAAA 476 consensus_10911#0 TGTAATTGATCAAAAAGCATTTTCGCCCTTAAATCAACTTTTC----------------- 1000 *************** *************************** consensus_10911#1 AA-- 486 consensus_10911#2 AAAA 480 consensus_10911#0 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||