These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2540 fasta sequence [TCTCTGGACTCGCCCCATTTCCTCTCGCCGCCGGCGCGTCGGCGCCGCGCCTCCGGCTGAGGAGAATGCTGCCCCCCGCGCCCA-CCCGAAAC-CCGGGAGCCTGCAGGTTCATACCC-CTCCTCCCACCAAAACCGCTTCTCTCTCCCGCCGCCGCCGCCGCCTCCTCCCGCGGTGGCCTCTGCGTCGCCGCCGCATCCCGCCGCGATTTCCTCCTCCTAGTCCCCTCCATCGCCGCGGCCTCCACCGTGCTCCAGTCCCTCCCGCTATCCGCCTCCGCCGCGGACGATGAGAAGCAGGCCGCGTCGCCCGCGCCGGGCCCTGCAGCGGCTCCGGCTCCAACCTCCGCGGGAGAGCCCGAGGCGGAGGCGCTGTCGAGGGTGTACGACGCGACGGTCATCGGGGAGCCGCAGGCCGTGGGGAAGGACGCGCGGCGGAGGGTGTGGGAGAAGCTGATGGCCGCGCGGGTGGTGTACCTCGGCGAGGCCGAGCTCGTGCCCGACCGCGACGACAGGGTGCTCGAGCTCGAGGTCGTGAGGAAGCTGGCGGCACGGTGCGCCGAGGCCGGAAGGAGCATCTCGCTTGCGCTCGAAGCCTTCCCGTGCAACCTCCAGGAGCAGCTCAACCAGTTCATGGACAGGAGAATTGATGGCAACAACTTAAGGTTGTACACTTCTCACTGGGCACCAGAGCGCTGGCAGGAGTATGAACCCCTTTTGAACTACTGTCGTGATAATGGAGTCAAACTTGTTGCCTGTGGAACTCCACTTGAGGTGTCAAGAACTGTCCAAGCAGAAGGAATTAGAGGCCTTTCAAAAGCACAAAGAAAGCTGTACGCTCCTCCAGCTGGCTCAGGCTTCATTTCTGGTTTTACATCCATCTCAGGCCGATCATTGATAGACAAGATTTCAGCAATTCATGGCTCTCCATTTGGCCCAAGCTCGTACCTATCTGCACAGGCAAGAGTAGTTGATGACTATACCATGTCCCAAAAAATAATGAAAGAAATTACTAATGGATATCCTTCAGGGATGCTTGTTGTTGTAACTGGTTCAAGCCATGTTATATATGGTTCACGTGGAATTGGAGTCCCTGCTAGAATATCTAAAAAGATGCAAAAGAAGAAACAAGTTGTAGTACTTCTTAATCCTGAGAGGCAAGGTATTAGGAGAGAAGGTGAAATCCCTGTAGCTGATTTCTTGTGGTACTCTGCTGCCAAGCCATGCAGTCGAAATTGCTTTGACCGTGCTGAAATTGCTAGAGTTATGAATGCGGCTGGTAGGAGGCGAGAAGCATTACCCCAGGATCTTCAGAAAGGAATAGATCTTGGCGTGGTTTCTCCTGAGATACTGCAAAACTTTTTTGACCTTGAGAAATATCCTGTTATGGCTGAACTGATTCACCGATTCCAAGGTTTCCGTGAAAGGTTATTAGCTGATCCCAAATTCCTGCATAGATTAGCTATTGAAGAGGGTATATCAATTACCACCACTCTCATAGCTCAGTATGAGAAACGGAAAGGAAGGTTTCTTGAAGAGATCGACTATGTCCTTACTGATACGATTAGAGGTTCTGTTGTTGACTTCTTTACAGTGTGGCTTCCTGCTCCTACCATTTCACTCTTATCTTTAGGTGATAATGGTTCTGGTGAGAGTTTGGAGCTTCTCAAAGGACTTTTAGGGTCACTTCCAGATAATGCATTTCAAAAGGGTATTATGGGGCAGAGCTGGAACACAAACCAGAGGTTTGCCTCAGTGCTGATGGGTGGAATTAAACTTGCTGGTGTGGGATTCATTTCTAGTATTGGAGCTGGAGTTGCTTCAGATGTTCTGTATGCTGCTCGTCGAGTTTTGAGACCTTCTACAAGTGTTGAAACAGCGCGCAGAAGAACCCCCATATGGAAATCGGCGACTGTTTATAGTTGCTTCCTTGGAACATCAGCAAATCTACGATATCAGGTCATTGCTGGTCTGGTGGAGCATCGCCTAGGAGAATATCTGATGGCTTACTATAACCAGCCGCTTCTTGCTAACTTGTTGTCCTTTGTTTCACGGACAATTAATTCATACTGGGGAACACAGCAATGGATTGATCTTGCACGGGCTACAGGCCTGCAAACTAGTAAGAAAGAGCTGCCATCTCCAGAGATTTCAAACCTACCTGACATGCCACTGTTAGAATGTGGCACAACAGAAGTACAAAATATGGATG--AGCAACAAGCAACAGCCAATGAAGTAACCGTACATAGCCAATGACTCCTTGGCCTGTTTGATTGTGGCCATTCAACACAGGGACAACTTTTGTTTTGATCACCCGATACTGTACAGGTATATATACGGGAAAGACTTCGTACGGCAGATTGAAGCTCGTCGATATTTTTGTTTCCCAATCTTTATGGCCAGGCCAATTTTAACCCTTCGAGAGTATATATTTGTACATCAGTGAATGAAACAAATCAAGTTCGAAACACGTAAACAATTACACGCAGGAGTTCCCTCTGAACACATCCTATTTACTCATTCTGAATCCAATGTTTTCTTGAG] [+] EMBL AK072789 [TCTCTGGACTCGCCCCATTTCCTCTCGCCGCCGGCGCGTCGGCGCCGCGCCTCCGGCTGAGGAGAATGCTGCCCCCCGCGCCCA CCCGAAAC CCGGGAGCCTGCAGGTTCATACCC CTCCTCCCACCAAAACCGCTTCTCTCTCCCGCCGCCGCCGCCGCCTCCTCCCGCGGTGGCCTCTGCGTCGCCGCCGCATCCCGCCGCGATTTCCTCCTCCTAGTCCCCTCCATCGCCGCGGCCTCCACCGTGCTCCAGTCCCTCCCGCTATCCGCCTCCGCCGCGGACGATGAGAAGCAGGCCGCGTCGCCCGCGCCGGGCCCTGCAGCGGCTCCGGCTCCAACCTCCGCGGGAGAGCCCGAGGCGGAGGCGCTGTCGAGGGTGTACGACGCGACGGTCATCGGGGAGCCGCAGGCCGTGGGGAAGGACGCGCGGCGGAGGGTGTGGGAGAAGCTGATGGCCGCGCGGGTGGTGTACCTCGGCGAGGCCGAGCTCGTGCCCGACCGCGACGACAGGGTGCTCGAGCTCGAGGTCGTGAGGAAGCTGGCGGCACGGTGCGCCGAGGCCGGAAGGAGCATCTCGCTTGCGCTCGAAGCCTTCCCGTGCAACCTCCAGGAGCAGCTCAACCAGTTCATGGACAGGAGAATTGATGGCAACAACTTAAGGTTGTACACTTCTCACTGGGCACCAGAGCGCTGGCAGGAGTATGAACCCCTTTTGAACTACTGTCGTGATAATGGAGTCAAACTTGTTGCCTGTGGAACTCCACTTGAGGTGTCAAGAACTGTCCAAGCAGAAGGAATTAGAGGCCTTTCAAAAGCACAAAGAAAGCTGTACGCTCCTCCAGCTGGCTCAGGCTTCATTTCTGGTTTTACATCCATCTCAGGCCGATCATTGATAGACAAGATTTCAGCAATTCATGGCTCTCCATTTGGCCCAAGCTCGTACCTATCTGCACAGGCAAGAGTAGTTGATGACTATACCATGTCCCAAAAAATAATGAAAGAAATTACTAATGGATATCCTTCAGGGATGCTTGTTGTTGTAACTGGTTCAAGCCATGTTATATATGGTTCACGTGGAATTGGAGTCCCTGCTAGAATATCTAAAAAGATGCAAAAGAAGAAACAAGTTGTAGTACTTCTTAATCCTGAGAGGCAAGGTATTAGGAGAGAAGGTGAAATCCCTGTAGCTGATTTCTTGTGGTACTCTGCTGCCAAGCCATGCAGTCGAAATTGCTTTGACCGTGCTGAAATTGCTAGAGTTATGAATGCGGCTGGTAGGAGGCGAGAAGCATTACCCCAGGATCTTCAGAAAGGAATAGATCTTGGCGTGGTTTCTCCTGAGATACTGCAAAACTTTTTTGACCTTGAGAAATATCCTGTTATGGCTGAACTGATTCACCGATTCCAAGGTTTCCGTGAAAGGTTATTAGCTGATCCCAAATTCCTGCATAGATTAGCTATTGAAGAGGGTATATCAATTACCACCACTCTCATAGCTCAGTATGAGAAACGGAAAGGAAGGTTTCTTGAAGAGATCGACTATGTCCTTACTGATACGATTAGAGGTTCTGTTGTTGACTTCTTTACAGTGTGGCTTCCTGCTCCTACCATTTCACTCTTATCTTTAGGTGATAATGGTTCTGGTGAGAGTTTGGAGCTTCTCAAAGGACTTTTAGGGTCACTTCCAGATAATGCATTTCAAAAGGGTATTATGGGGCAGAGCTGGAACACAAACCAGAGGTTTGCCTCAGTGCTGATGGGTGGAATTAAACTTGCTGGTGTGGGATTCATTTCTAGTATTGGAGCTGGAGTTGCTTCAGATGTTCTGTATGCTGCTCGTCGAGTTTTGAGACCTTCTACAAGTGTTGAAACAGCGCGCAGAAGAACCCCCATATGGAAATCGGCGACTGTTTATAGTTGCTTCCTTGGAACATCAGCAAATCTACGATATCAGGTCATTGCTGGTCTGGTGGAGCATCGCCTAGGAGAATATCTGATGGCTTACTATAACCAGCCGCTTCTTGCTAACTTGTTGTCCTTTGTTTCACGGACAATTAATTCATACTGGGGAACACAGCAATGGATTGATCTTGCACGGGCTACAGGCCTGCAAACTAGTAAGAAAGAGCTGCCATCTCCAGAGATTTCAAACCTACCTGACATGCCACTGTTAGAATGTGGCACAACAGAAGTACAAAATATGGATG AGCAACAAGCAACAGCCAATGAAGTAACCGTACATAGCCAATGACTCCTTGGCCTGTTTGATTGTGGCCATTCAACACAGGGACAACTTTTGTTTTGATCACCCGATACTGTACAGGTATATATACGGGAAAGACTTCGTACGGCAGATTGAAGCTCGTCGATATTTTTGTTTCCCAATCTTTATGGCCAGGCCAATTTTAACCCTTCGAGAGTATATATTTGTACATCAGTGAATGAAACAAATCAAGTTCGAAACACGTAAACAATTACACGCAGGAGTTCCCTCTGAACACATCCTATTTACTCATTCTGAATCCAA ] [+] EMBL AK105709 [ CGCCCCATTTCCTCTCGCCGCCGGCGCGTCGGCGCCGCGCCTCCGGCTGAGGAGAATGCTGCCCCCCGCGCCCA CCCGAAAC CCGGGAGCCTGCAGGTTCATACCC CTCCTCCCACCAAAACCGCTTCTCTCTCCCGCCGCCGCCGCCGCCTCCTCCCGCGGTGGCCTCTGCGTCGCCGCCGCATCCCGCCGCGATTTCCTCCTCCTAGTCCCCTCCATCGCCGCGGCCTCCACCGTGCTCCAGTCCCTCCCGCTATCCGCCTCCGCCGCGGACGATGAGAAGCAGGCCGCGTCGCCCGCGCCGGGCCCTGCAGCGGCTCCGGCTCCAACCTCCGCGGGAGAGCCCGAGGCGGAGGCGCTGTCGAGGGTGTACGACGCGACGGTCATCGGGGAGCCGCAGGCCGTGGGGAAGGACGCGCGGCGGAGGGTGTGGGAGAAGCTGATGGCCGCGCGGGTGGTGTACCTCGGCGAGGCCGAGCTCGTGCCCGACCGCGACGACAGGGTGCTCGAGCTCGAGGTCGTGAGGAAGCTGGCGGCACGGTGCGCCGAGGCCGGAAGGAGCATCTCGCTTGCGCTCGAAGCCTTCCCGTGCAACCTCCAGGAGCAGCTCAACCAGTTCATGGACAGGAGAATTGATGGCAACAACTTAAGGTTGTACACTTCTCACTGGGCACCAGAGCGCTGGCAGGAGTATGAACCCCTTTTGAACTACTGTCGTGATAATGGAGTCAAACTTGTTGCCTGTGGAACTCCACTTGAGGTGTCAAGAACTGTCCAAGCAGAAGGAATTAGAGGCCTTTCAAAAGCACAAAGAAAGCTGTACGCTCCTCCAGCTGGCTCAGGCTTCATTTCTGGTTTTACATCCATCTCAGGCCGATCATTGATAGACAAGATTTCAGCAATTCATGGCTCTCCATTTGGCCCAAGCTCGTACCTATCTGCACAGGCAAGAGTAGTTGATGACTATACCATGTCCCAAAAAATAATGAAAGAAATTACTAATGGATATCCTTCAGGGATGCTTGTTGTTGTAACTGGTTCAAGCCATGTTATATATGGTTCACGTGGAATTGGAGTCCCTGCTAGAATATCTAAAAAGATGCAAAAGAAGAAACAAGTTGTAGTACTTCTTAATCCTGAGAGGCAAGGTATTAGGAGAGAAGGTGAAATCCCTGTAGCTGATTTCTTGTGGTACTCTGCTGCCAAGCCATGCAGTCGAAATTGCTTTGACCGTGCTGAAATTGCTAGAGTTATGAATGCGGCTGGTAGGAGGCGAGAAGCATTACCCCAGGATCTTCAGAAAGGAATAGATCTTGGCGTGGTTTCTCCTGAGATACTGCAAAACTTTTTTGACCTTGAGAAATATCCTGTTATGGCTGAACTGATTCACCGATTCCAAGGTTTCCGTGAAAGGTTATTAGCTGATCCCAAATTCCTGCATAGATTAGCTATTGAAGAGGGTATATCAATTACCACCACTCTCATAGCTCAGTATGAGAAACGGAAAGGAAGGTTTCTTGAAGAGATCGACTATGTCCTTACTGATACGATTAGAGGTTCTGTTGTTGACTTCTTTACAGTGTGGCTTCCTGCTCCTACCATTTCACTCTTATCTTTAGGTGATAATGGTTCTGGTGAGAGTTTGGAGCTTCTCAAAGGACTTTTAGGGTCACTTCCAGATAATGCATTTCAAAAGGGTATTATGGGGCAGAGCTGGAACACAAACCAGAGGTTTGCCTCAGTGCTGATGGGTGGAATTAAACTTGCTGGTGTGGGATTCATTTCTAGTATTGGAGCTGGAGTTGCTTCAGATGTTCTGTATGCTGCTCGTCGAGTTTTGAGACCTTCTACAAGTGTTGAAACAGCGCGCAGAAGAACCCCCATATGGAAATCGGCGACTGTTTATAGTTGCTTCCTTGGAACATCAGCAAATCTACGATATCAGGTCATTGCTGGTCTGGTGGAGCATCGCCTAGGAGAATATCTGATGGCTTACTATAACCAGCCGCTTCTTGCTAACTTGTTGTCCTTTGTTTCACGGACAATTAATTCATACTGGGGAACACAGCAATGGATTGATCTTGCACGGGCTACAGGCCTGCAAACTAGTAAGAAAGAGCTGCCATCTCCAGAGATTTCAAACCTACCTGACATGCCACTGTTAGAATGTGGCACAACAGAAGTACAAAATATGGATGATAGCAACAAGCAACAGCCAATGAAGTAACCGTACATAGCCAATGACTCCTTGGCCTGTTTGATTGTGGCCATTCAACACAGGGACAACTTTTGTTTTGATCACCCGATACTGTACAGGTATATATACGGGAAAGACTTCGTACGGCAGATTGAAGCTCGTCGATATTTTTGTTTCCCAATCTTTATGGCCAGGCCAATTTTAACCCTTCGAGAGTATATATTTGTACATCAGTGAATGAAACAAATCATGTTCGAAACACGTAAACAATTACACGCAGGAGTTCCCTCTGAACACATCCTATTTACTCATTCTGAATCCAATGTTTTCTTGAG] [+] EMBL CB635336 [ gccccCCCCCGGCGCGTCGGCGCCGCTCCTCCGGCTGAGGAGAATGCTGCCCCCCGCGCCCA CCCGTAAC CCGGGAGCCTGCAGGTTCATACCCNCTCCTCCCACCAAAACCGCTTCTCTCTCCCGCCGCCGCCGCCGCCTCCTCCCGCGGTGGCCTCTGCGTCGCCGCCGCATCCCGCCGCGATTTCCTCCTCCTAGTCCCCTCCATCGCCGCGGCCTCCACCGTGCTCCAGTCCCTCCCGCTATCCGCCTCCGCCGCGGACGATGAGAAGCAGGCCGCGTCGCCCGCGCCGGGCCCTGCAGAGGCTCCGGCTCCAACCTCCGCGGGAGAGCCCGAGGCGGAGGCGCTGTCGAGGGTGTACGACGCGACGGTCATCGGGGATCCGCAGGCCGTGGGGAAGGACGCGCGGCGGAGGGTGTGGGAGAAGCTGATGGCCGCGCGGGTGGTGTACCTCGGCGAGGTCGACCTCGAGCCCGACCGCGACGACAGGGGGCTCGAGCTCGAGGTCat ] [+] EMBL CB630473 [ CGGCGCGTCGGCGCCCCGTAACCGGCTGAGGAGAATGCTGCCCCCCGCGCCCACCCCCATTCACAGGGAGCCTGCAGGTTCATACCC CTCCTCCCACCAAAACCGCTTCTCTCTCCCGCCGCCGCCGCCGCCTCCTCCCGCGGTGGCCTCTGCGTCGCCGCCGCATCCCGCCGCGATTTCCTCCTCCTAGTCCCCTCCATCGCCGCGGCCTCCACCGTGCTCCAGTCCCTCCCGCTATCCGCCTCCGCCGCGGACGATGAGAAGCAGGCCGCGTCGCCCGCGCCGGGCCCTGCAGAGGCTCCGGCTCCAACCTCCGCGGGAGAGCCCGAGGCGGAGGCGCTGTCGAGGGTGTACGACGCGACGGTCATCGGGGAGCCGCAGGCCGTGGGGAAGGACGCGCGGCGGAGGGTGTGGGAGAAGCTGATGGCCGCGCGGGTGGTGTACCTCGGCGAGGCCGAGCTCGTGCCCGACCGCGACGACAGGGTGCTCGAGCTCGAGGTCGTGAGGAAGCTGGCGGCACGGTGCGCCGAGGCCGGAAGGAGCATCTCGCTTGCGCTCGAAGCCTTCCCGTGCAACCTCCAGGAGCAGCTCAACCAGTTCATGGACAGGAGAATTGATGGCAACAACTTAAGGTTGTACACTTCTCACTGGGCACCAGAGCGCTGGCAGGAGTATGAACCCCTTTTGAACTACTGTCGTGATAATGGAGTCAAACTTGTTGCCTGTGGAACTCCACTTGAGGTGTCAAGA ] consensusID : consensus_10913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1006 fasta sequence [CTCCCTTCCTCCGCCGCCGATGGCGAGGCGCCTCCCACGGATTCATCCTCCCCCTCGCCGCCGTCTGCGGAGGAGGCGGGGGCGGTGGTGGAGGAGGTCGACGAGTCGGCGCTGTCGAGGGTGTACGATGCCACGGTCATCGGGGAGCCGGAGGCTGTGGGGAAGGACGCGAGGGGGCGGGTCTGGGAGAAGCTGACGGCCGCGAGGGTGGTGTACCTCGGCGAGGCCGAGCTCGTGCCCGACCCCGACGACCGCGTGCTCGAGCTCGAGATCATGAAGGGGCTCGCGACCCGGTGCGCGGAGGCCGAGCGGGGCGTGGCGGTCGCGCTCGAGGCGTTCCCCTGCGACCTCCAGCAGCAGCTCGACCAGTTCATGGACGGAAGGATTGATGGTAGCATCCTAAAGTTGTACACGTTGCACTGGCCACAAGACCGGTGGGAGGAGTATGAACCTCTTCTGAATTATTGCCGTGATAATGGAATTAAGCTTATTGCTTGCGGAACTCCACTTGAGGTGAAAAGAACTGTCCAAGCAGATGGGATTAGAGGCCTTTCAAAGGCAGAAAGACAAGAATATGCCCCTCCAGCAGGCTCTGGCTTCATCTCTGGCTTTTCATCTATCTCAGGCCGGTCATTGATAGACAAAATTTCATCAGCTCGTGATTCTCCTTTTGGTCCTACCTCATATTTATCAGCACAGGCAAGAGTAGTTGATGATTATACCATGTCACAAATTATTCTGAAAGAGCTTAATGGCGGGGATACTTCAAGGATGCTAAATTGTTAT-ACGGGNTGCAGGCCATGTTATTTATGGGTCACGAGGAATCGGTGTTCCTGCCAGAGTATCTAAAAAGATGCCAAAGAAAGACCAAGTTGTTGTACTACTTGATCCTGAGAGACAAAGCATAAGGAGGGAAGGTGAAATCCCGGTTGCTGACTTCTTATGGTATTCAGCAGCTAAACCTTGCAGTAGAAACTGCTTTGACCGTGCTGAAATTGCACGAGTT] [+] EMBL CB672638 [CTCCCTTCCTCCGCCGCCGATGGCGAGGCGCCTCCCACGGATTCATCCTCCCCCTCGCCGCCGTCTGCGGAGGAGGCGGGGGCGGTGGTGGAGGAGGTCGACGAGTCGGCGCTGTCGAGGGTGTACGATGCCACGGTCATCGGGGAGCCGGAGGCTGTGGGGAAGGACGCGAGGGGGCGGGTCTGGGAGAAGCTGACGGCCGCGAGGGTGGTGTACCTCGGCGAGGCCGAGCTCGTGCCCGACCCCGACGACCGCGTGCTCGAGCTCGAGATCATGAAGGGGCTCGCGACCCGGTGCGCGGAGGCCGAGCGGGGCGTGGCGGTCGCGCTCGAGGCGTTCCCCTGCGACCTCCAGCAGCAGCTCGACCAGTTCATGGACGGAAGGATTGATGGTAGCATCCTAAAGTTGTACACGTTGCACTGGCCACAAGACCGGTGGGAGGAGTATGAACCTCTTCTGAATTATTGCCGTGATAATGGAATTAAGCTTATTGCTTGCGGAACTCCACTTGAGGTGAAAAGAACTGTCCAAGCAGATGGGATTAGAGGCCTTTCAAAGGCAGAAAGACAAGAATATGCCCCTCCAGCAGGCTCTGGCTTCATCTCTGGCTTTTCATCTATCTCAGGCCGGTCATTGATAGACAAAATTTCATCAGCTCGTGATTCTCCTTTTGGTCCTACCTCATATTTATCAGCACAGGCAAGAGTAGTTGATGATTATACCATGTCACAAATTATTCTGAAAGAGCTTAATGGCGGGGATACTTCAAGGATGCTAAATTGTTAT ACGGGNTGCAG ] [+] EMBL CB635472 [ GGCCGCCCTCGTGCCCGACCCCGACGACCGCGTGCTCGAGCTCGAGATCATGAAGGGGCTCGCGACCCGGTGCGCGGAGGCCGAGCGGGGCGTGGCGGTCGCGCTCGAGGCGTTCCCCTGCGACCTCCAGCAGCAGCTCGACCAGTTCATGGACGGAAGGATTGATGGTAGCATCCTAAAGTTGTACACGTTGCACTGGCCACAAGACCGGTGGGAGGAGTATGAACCTCTTCTGAATTATTGCCGTGATAATGGAATTAAGCTTATTGCTTGCGGAACTCCACTTGAGGTGAAAAGAACTGTCCAAGCAGATGGGATTAGAGGCCTTTCAAAGGCAGAAAGACAAGAATATGCCCCTCCAGCAGGCTCTGGCTTCATCTCTGGCTTTTCATCTATCTCAGGCCGGTCATTGATAGACAAAATTTCATCAGCTCGTGATTCTCCTTTTGGTCCTACCTCATATTTATCAGCACAGGCAAGAGTAGTTGATGATTATACCATGTCACAAATTATTCTGAAAGAGCTTAATGGCGGGGATACTTCAAGAATGCT AATTGTTATAACGGG TGCAAGCCATGTTATTTATGGGTCACGAGGAATCGGTGTTCCTGCCAGAGTATCTAAAAAGATGCCAAAGAAAGACCAAGTTGTTGTACTACTTGATCCTGAGAGACAAAGCATAAGGAGGGAAGGTGAAATCCCGGTTGCTGACTTCTTATGGTATTCAGCAGCTAAACCTTGCAGTAGAAACTGCTTTGACCGTGCTGAAATTGCACGAGTT] consensusID : consensus_10913#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 545 fasta sequence [GATCCGGTCGAGCTATTACCAGCCGCTNCTTGCTAACTTGTTGTCCTTTGTTTCACGGACAATTAATTCATACTGGGGAACACANCCATGGATTGATCTTGCACGGGCTACAGGCCTGCAAACTAGTAAGAAAGAGCTGCCATCTCCAGAGATTTCAAACCTACCTGACATGCCACTGTTAGAATGTGGCACAACAGAAGTACAAAATATGGATGATAGCAACAAGCAACAGCCAATGAAGTAACCGTACATAGCCNATGACTCCTTGGCCTGTTTGATTGTGGCCATTCAACACAGGGACAACTTTTGTTTTGATCACCCGATACTGTTCAGGTATATATACGGGAAAGACTTCGTACGGCAGATNGAAGCTCGTCGATATTTTTGTTTCCCAATCTTTATGGCCAGGCCAATTTTAACCCTTCGAGAGTATATATTTGTACATCAGTGAATGAAACAAATCAAGTNCGAAACACGTNAACAATTACACGCAGGAGTTCCCTCTGAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AA753236 [GATCCGGTCGAGCTATTACCAGCCGCTNCTTGCTAACTTGTTGTCCTTTGTTTCACGGACAATTAATTCATACTGGGGAACACANCCATGGATTGATCTTGCACGGGCTACAGGCCTGCAAACTAGTAAGAAAGAGCTGCCATCTCCAGAGATTTCAAACCTACCTGACATGCCACTGTTAGAATGTGGCACAACAGAAGTACAAAATATGGATGATAGCAACAAGCAACAGCCAATGAAGTAACCGTACATAGCCNATGACTCCTTGGCCTGTTTGATTGTGGCCATTCAACACAGGGACAACTTTTGTTTTGATCACCCGATACTGTTCAGGTATATATACGGGAAAGACTTCGTACGGCAGATNGAAGCTCGTCGATATTTTTGTTTCCCAATCTTTATGGCCAGGCCAATTTTAACCCTTCGAGAGTATATATTTGTACATCAGTGAATGAAACAAATCAAGTNCGAAACACGTNAAC ] [+] EMBL CA758149 [ GCCAATGACTCCTTGGCCTGTTTGATTGTGGCCATTCAACACAGGGACAACTTTTGTTTTGATCACCCGATACTGTACAGGTATATATACGGGAAAGACTTCGTACGGCAGATTGAAGCTCGTCGATATTTTTGTTTCCCAATCTTTATGGCCAGGCCAATTTTAACCCTTCGAGAGTATATATTTGTACATCAGTGAATGAAACAAATCAAGTTCGAAACACGTAAACAATTACACGCAGGAGTTCCCTCTGAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10913#0 TCTCTGGACTCGCCCCATTTCCTCTCGCCGCCGGCGCGTCGGCGCCGCGCCTCCGGCTGA 60 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 GGAGAATGCTGCCCCCCGCGCCCACCCGAAACCCGGGAGCCTGCAGGTTCATACCCCTCC 120 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 TCCCACCAAAACCGCTTCTCTCTCCCGCCGCCGCCGCCGCCTCCTCCCGCGGTGGCCTCT 180 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 GCGTCGCCGCCGCATCCCGCCGCGATTTCCTCCTCCTAGTCCCCTCCATCGCCGCGGCCT 240 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 CCACCGTGCTCCAGTCCCTCCCGCTATCCGCCTCCGCCGCGGACGATGAGAAGCAGGCCG 300 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 CGTCGCCCGCGCCGGGCCCTGCAGCGGCTCCGGCTCCAACCTCCGCGGGAGAGCCCGAGG 360 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 CGGAGGCGCTGTCGAGGGTGTACGACGCGACGGTCATCGGGGAGCCGCAGGCCGTGGGGA 420 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 AGGACGCGCGGCGGAGGGTGTGGGAGAAGCTGATGGCCGCGCGGGTGGTGTACCTCGGCG 480 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 AGGCCGAGCTCGTGCCCGACCGCGACGACAGGGTGCTCGAGCTCGAGGTCGTGAGGAAGC 540 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 TGGCGGCACGGTGCGCCGAGGCCGGAAGGAGCATCTCGCTTGCGCTCGAAGCCTTCCCGT 600 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 GCAACCTCCAGGAGCAGCTCAACCAGTTCATGGACAGGAGAATTGATGGCAACAACTTAA 660 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 GGTTGTACACTTCTCACTGGGCACCAGAGCGCTGGCAGGAGTATGAACCCCTTTTGAACT 720 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 ACTGTCGTGATAATGGAGTCAAACTTGTTGCCTGTGGAACTCCACTTGAGGTGTCAAGAA 780 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 CTGTCCAAGCAGAAGGAATTAGAGGCCTTTCAAAAGCACAAAGAAAGCTGTACGCTCCTC 840 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 CAGCTGGCTCAGGCTTCATTTCTGGTTTTACATCCATCTCAGGCCGATCATTGATAGACA 900 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 AGATTTCAGCAATTCATGGCTCTCCATTTGGCCCAAGCTCGTACCTATCTGCACAGGCAA 960 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 GAGTAGTTGATGACTATACCATGTCCCAAAAAATAATGAAAGAAATTACTAATGGATATC 1020 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 CTTCAGGGATGCTTGTTGTTGTAACTGGTTCAAGCCATGTTATATATGGTTCACGTGGAA 1080 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 TTGGAGTCCCTGCTAGAATATCTAAAAAGATGCAAAAGAAGAAACAAGTTGTAGTACTTC 1140 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 TTAATCCTGAGAGGCAAGGTATTAGGAGAGAAGGTGAAATCCCTGTAGCTGATTTCTTGT 1200 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 GGTACTCTGCTGCCAAGCCATGCAGTCGAAATTGCTTTGACCGTGCTGAAATTGCTAGAG 1260 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 TTATGAATGCGGCTGGTAGGAGGCGAGAAGCATTACCCCAGGATCTTCAGAAAGGAATAG 1320 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 ATCTTGGCGTGGTTTCTCCTGAGATACTGCAAAACTTTTTTGACCTTGAGAAATATCCTG 1380 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 TTATGGCTGAACTGATTCACCGATTCCAAGGTTTCCGTGAAAGGTTATTAGCTGATCCCA 1440 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 AATTCCTGCATAGATTAGCTATTGAAGAGGGTATATCAATTACCACCACTCTCATAGCTC 1500 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 AGTATGAGAAACGGAAAGGAAGGTTTCTTGAAGAGATCGACTATGTCCTTACTGATACGA 1560 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 TTAGAGGTTCTGTTGTTGACTTCTTTACAGTGTGGCTTCCTGCTCCTACCATTTCACTCT 1620 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 TATCTTTAGGTGATAATGGTTCTGGTGAGAGTTTGGAGCTTCTCAAAGGACTTTTAGGGT 1680 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 CACTTCCAGATAATGCATTTCAAAAGGGTATTATGGGGCAGAGCTGGAACACAAACCAGA 1740 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 GGTTTGCCTCAGTGCTGATGGGTGGAATTAAACTTGCTGGTGTGGGATTCATTTCTAGTA 1800 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ------------------------------------------------------------ consensus_10913#0 TTGGAGCTGGAGTTGCTTCAGATGTTCTGTATGCTGCTCGTCGAGTTTTGAGACCTTCTA 1860 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 ---------------------CTCCCTTCCTCCGCCGCCGATGGCGAGGCGCCTCCCACG 39 consensus_10913#0 CAAGTGTTGAAACAGCGCGCAGAAGAACCCCCATATGGAAATCGGCGACTGTTTATAGTT 1920 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 GATTCATCCTCCCCCTCGCCGCCGTCTGCGGAGGAGGCGGGGGCGGTGGTGGAGGAGGTC 99 consensus_10913#0 GCTTCCTTGGAACATCAGCAAATCTACGATATCAGGTCATTGCTGGTCTGGTGGAGCATC 1980 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 GACGAGTCGGCGCTGTCGAGGGTGTACGATGCCACGGTCATCGGGGAGCCGGAGGCTGTG 159 consensus_10913#0 GCCTAGGAGAATATCTGATGGCTTACTATAACCAGCCGCTTCTTGCTAACTTGTTGTCCT 2040 consensus_10913#2 -----------GATCCGGTCG--AGCTATTACCAGCCGCTNCTTGCTAACTTGTTGTCCT 47 consensus_10913#1 GGGAAGGACGCGAGGGGGCGG--GTCTGGGAGAAGCTGACGGCCGCGAGGGTGGTGTACC 217 * * * ** * *** * ** * ** *** * consensus_10913#0 TTGTTTCA--CGGACAATTAATTCATACTGGGGAACACAGCAATGGATT---GATCTTGC 2095 consensus_10913#2 TTGTTTCA--CGGACAATTAATTCATACTGGGGAACACANCCATGGATT---GATCTTGC 102 consensus_10913#1 TCGGCGAGGCCGAGCTCGTGCCCGACCCCGACGACCGCGTGCTCGAGCTCGAGATCATGA 277 * * ** * * * * * ** * * * * **** ** consensus_10913#0 ACGGGCTACAGGCCTG-----CAAA---CTAGTAAGAAAGAGCTGCCA------------ 2135 consensus_10913#2 ACGGGCTACAGGCCTG-----CAAA---CTAGTAAGAAAGAGCTGCCA------------ 142 consensus_10913#1 AGGGGCTCGCGACCCGGTGCGCGGAGGCCGAGCGGGGCGTGGCGGTCGCGCTCGAGGCGT 337 * ***** * ** * * * * ** * ** * * consensus_10913#0 TCTCCAGAGATTTCAAAC--CTACCTGACATGC-CACTGTTAGAATGTGGCACAACAGAA 2192 consensus_10913#2 TCTCCAGAGATTTCAAAC--CTACCTGACATGC-CACTGTTAGAATGTGGCACAACAGAA 199 consensus_10913#1 TCCCCTGCGACCTCCAGCAGCAGCTCGACCAGTTCATGGACGGAAGGATTGATGGTAGCA 397 ** ** * ** ** * * * * *** * ** * *** * * ** * consensus_10913#0 GTACAAAAT-ATGGATGA--GCAACAAGCAACAG-CCAATGAAGTAACCGTACATAGCCA 2248 consensus_10913#2 GTACAAAAT-ATGGATGATAGCAACAAGCAACAG-CCAATGAAGTAACCGTACATAGCCN 257 consensus_10913#1 TCCTAAAGTTGTACACGTT-GCACTGGCCACAAGACCGGTGGGAGGAGTATGAACCTCTT 456 *** * * * * *** ** ** ** ** * * * * consensus_10913#0 ATGACTCCTTGGCCTGTTTGATTGTGGCCA-TTCAACACAGGGACAACTTTTGTTTTGAT 2307 consensus_10913#2 ATGACTCCTTGGCCTGTTTGATTGTGGCCA-TTCAACACAGGGACAACTTTTGTTTTGAT 316 consensus_10913#1 CTGAATTATTGCCGTGAT-AATGGAATTAAGCTTATTGCTTGCGGAACTCCACTTGAGGT 515 *** * *** * ** * ** * * * * * * **** ** * * consensus_10913#0 CACCCGATACTGTACAGGTATATATACGGGAAAGACTTCGTACGGCAGATTGAA------ 2361 consensus_10913#2 CACCCGATACTGTTCAGGTATATATACGGGAAAGACTTCGTACGGCAGATNGAA------ 370 consensus_10913#1 GAAAAGA-ACTGTCCAAGCAGATGGGATTAGAGGCCTTTCAAAGGCAGAAAGACAAGAAT 574 * ** ***** ** * * ** * * *** * ****** ** consensus_10913#0 --GCTCGTCGATATTTTTGTTTCCCAATCTTTATGGCCAGGCCAATTTTAACCCT-TCGA 2418 consensus_10913#2 --GCTCGTCGATATTTTTGTTTCCCAATCTTTATGGCCAGGCCAATTTTAACCCT-TCGA 427 consensus_10913#1 ATGCCCCTCCAGCAGGCTCTGGCTTCATCTCTGGCTTTTCATCTATCTCAGGCCGGTCAT 634 ** * ** * * * * **** * * ** * * ** ** consensus_10913#0 GAGTATATATTTGTACATCAGTGAATGAAACAAATCAAGTTCGAAAC--ACGTAAACAAT 2476 consensus_10913#2 GAGTATATATTTGTACATCAGTGAATGAAACAAATCAAGTNCGAAAC--ACGTNAACAAT 485 consensus_10913#1 TGATAGACAAAATTTCATCAGCTCGTGATTCTCCTTTTGGTCCTACCTCATATTTATCAG 694 ** * * * ****** *** * * * * * * * * * * consensus_10913#0 TACACGCAGGAGTTCCCTCTGAACACATCCTATTTACTCATTCTGAATCCAATGTTTTCT 2536 consensus_10913#2 TACACGCAGGAGTTCCCTCTGAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 545 consensus_10913#1 CACAGGCAAGAGTAGTTGATGATTATACCATGTCACAAATTATTCTGAAAGAGCTTAATG 754 *** *** **** *** * * * consensus_10913#0 TGAG-------------------------------------------------------- 2540 consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 GCGGGGATACTTCAAGGATGCTAAATTGTTATACGGGNTGCAGGCCATGTTATTTATGGG 814 consensus_10913#0 ------------------------------------------------------------ consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 TCACGAGGAATCGGTGTTCCTGCCAGAGTATCTAAAAAGATGCCAAAGAAAGACCAAGTT 874 consensus_10913#0 ------------------------------------------------------------ consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 GTTGTACTACTTGATCCTGAGAGACAAAGCATAAGGAGGGAAGGTGAAATCCCGGTTGCT 934 consensus_10913#0 ------------------------------------------------------------ consensus_10913#2 ------------------------------------------------------------ consensus_10913#1 GACTTCTTATGGTATTCAGCAGCTAAACCTTGCAGTAGAAACTGCTTTGACCGTGCTGAA 994 consensus_10913#0 ------------ consensus_10913#2 ------------ consensus_10913#1 ATTGCACGAGTT 1006 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||