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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1479 fasta sequence
[TCGTTGCCTTCTCCGTGCCGAACACCACAGCGCGCGCGCGGGGGGGCGGGTTCGGCTCTCTCGCGAGCTCTGCTCTCTGTCCCTCTCTCTCTCTCGCCGCCTCCTGCCTCGCACACTCGAGATTGGTGGGGTGGATTTGGGGGAGGAGGAGGTGGGGTGGGGTGGGGTGGTTGCTGAGGAGGAGGTGGTGGTGAGAG-ATCGGGCGGCGGGTTGCCGCCGGAGGAGGTAGAGGGATCCTCGGGGGAGGGCGGTTCTTGGGTCGGGGGACCCCCCCATGGCGTGAGGAGAGGGTGCCCTCCGGGAGATCTTGCGGGGCGGGTGTGTGGTGTTGCTAGCTGAGGCTGTTGGGTGGGTACCCCCGAGCGGCCGGGGAATCTCCTCCCTTCTCGAGCGACCGCCCGCGTCGCTCCGCCATGGCCGGCAGCGACGAGGTCAACCGCAACGAGTGCAAGACGGTGGTGCCGCTCCACACATGGGTGCTCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGCGGGACCTCGGGGAGTACCTGGA-CAGGAGGGTGCCGGCGAACGCGCGGCCGCTGGAGGGGGTGTCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGGCGGCGGCGGAGGGTGACGCGGAGGAGGGGGCGGCGGCGGTGACGCGGCCCATCCTTGAGTTCCTGACGGACGCGCCAGCGGCGGAGCCGTTCCCGGTGATCATATTCTTCCACGGCGGCAGCTTCGTGCACTCGTCGGCCAGCTCGACCATCTACGACAGTCTGTGCCGCCGGTTCGTGAAGCTGAGCAAGGGCGTCGTGGTGTCCGTCAACTACCGGCGCGCGCCGGAGCACCGCTACCCGTGCGCGTACGACGACGGGTGGACCGCGCTCAAGTGGGTCATGTCGCAGCCGTTCATGCGCAGCGGCGGCGACGCGCAGGCCCGCGTGTTCCTCTCCGGCGACAGCTCCGGCGGCAACATCGCCCACCACGTCGCCGTCCGCGCCGCCGACGAGGGCGTCAAGGTCTGCGGCAACATCCTGCTCAACGCCATGTTCGGCGGCACCGAGCGCACGGAGTCGGAGCGGCGGCTCGACGGCAAGTACTTCGTGACGCTCCAGGACAGGGACTGGTACTGGAAGGCGTACCTGCCGGAGGACGCCGACCGGGACCATCCGGCGTGCAACCCGTTCGGCCCGAACGGCCGGCGGCTCGGGGGCCTCCCCTTCGCCAAGAGCCTCATCATCGTGTCGGGCCTGGACCTCACCTGCGACCGGCAGCTCGCCTACGCCGACGCCCTCCGGGAGGACGGCCACCACGTCAAGGTTGTCCAATGCGAGAACGCCACGGTGGGGTTCTACCTGTTGCCCAACACCGTCCACTACCACGAGGTCATGGAGGAGATCTCCGACTTCCTCAACGCTAACCTCTACTACTAGT]
[+] EMBL AK074026 [TCGTTGCCTTCTCCGTGCCGAACACCACAGCGCGCGCGCGGGGGGGCGGGTTCGGCTCTCTCGCGAGCTCTGCTCTCTGTCCCTCTCTCTCTCTCGCCGCCTCCTGCCTCGCACACTCGAGATTGGTGGGGTGGATTTGGGGGAGGAGGAGGTGGGGTGGGGTGGGGTGGTTGCTGAGGAGGAGGTGGTGGTGAGAG ATCGGGCGGCGGGTTGCCGCCGGAGGAGGTAGAGGGATCCTCGGGGGAGGGCGGTTCTTGGGTCGGGGGACCCCCCCATGGCGTGAGGAGAGGGTGCCCTCCGGGAGATCTTGCGGGGCGGGTGTGTGGTGTTGCTAGCTGAGGCTGTTGGGTGGGTACCCCCGAGCGGCCGGGGAATCTCCTCCCTTCTCGAGCGACCGCCCGCGTCGCTCCGCCATGGCCGGCAGCGACGAGGTCAACCGCAACGAGTGCAAGACGGTGGTGCCGCTCCACACATGGGTGCTCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGCGGGACCTCGGGGAGTACCTGGA CAGGAGGGTGCCGGCGAACGCGCGGCCGCTGGAGGGGGTGTCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGGCGGCGGCGGAGGGTGACGCGGAGGAGGGGGCGGCGGCGGTGACGCGGCCCATCCTTGAGTTCCTGACGGACGCGCCAGCGGCGGAGCCGTTCCCGGTGATCATATTCTTCCACGGCGGCAGCTTCGTGCACTCGTCGGCCAGCTCGACCATCTACGACAGTCTGTGCCGCCGGTTCGTGAAGCTGAGCAAGGGCGTCGTGGTGTCCGTCAACTACCGGCGCGCGCCGGAGCACCGCTACCCGTGCGCGTACGACGACGGGTGGACCGCGCTCAAGTGGGTCATGTCGCAGCCGTTCATGCGCAGCGGCGGCGACGCGCAGGCCCGCGTGTTCCTCTCCGGCGACAGCTCCGGCGGCAACATCGCCCACCACGTCGCCGTCCGCGCCGCCGACGAGGGCGTCAAGGTCTGCGGCAACATCCTGCTCAACGCCATGTTCGGCGGCACCGAGCGCACGGAGTCGGAGCGGCGGCTCGACGGCAAGTACTTCGTGACGCTCCAGGACAGGGACTGGTACTGGAAGGCGTACCTGCCGGAGGACGCCGACCGGGACCATCCGGCGTGCAACCCGTTCGGCCCGAACGGCCGGCGGCTCGGGGGCCTCCCCTTCGCCAAGAGCCTCATCATCGTGTCGGGCCTGGACCTCACCTGCGACCGGCAGCTCGCCTACGCCGACGCCCTCCGGGAGGACGGCCACCACGTCAAGGTTGTCCAATGCGAGAACGCCACGGTGGGGTTCTACCTGTTGCCCAACACCGTCCACTACCACGAGGTCATGGAGGAGATCTCCGACTTCCTCAACGCTAACCTCTACTACTAGT]
[+] EMBL AU070784 [ GAGATTGGTGGGGTGGATTTGGGGGAGGAGGAGGTGGGGTGGGGTGGGGTGGTTGCTGAGGAGGAGGTGGTGGTGAGAG ATCGGGCGGCGGGTTGCCGCCGGAGGAGGTAGAGGGATCCTCGGGGGAGGGCGGTTCTTGGGTCGGGGGACCCCCCCATGGCGTGAGGAGAGGGTGCCCTCCGGGAGATCTTGCGGGGCGGGTGTGTGGTGTTGCTAGCTGAGGCTGTTGGGTGGGTACCCCCGAGCGGCCGGGGAATCTCCTCCCTTCTCGAGCGACCGCCCGCGTCGCTCCGCCATGGCCGGCAGCGACGAGGTCAACCGCAACGAGTGCAAGACGGTGGTGCCGCTCCACACATGGGTGCTCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGCGGGACCTCGGGGAGTACCTGGA CAGGAGGGTGC ]
[+] EMBL AU091999 [ AGGAGGTGGTGGTGAGAGAATCGGGCGGCGGGTTNCCGCCGGAGGAGGTAGAGGGATCCTCGGGGGAGGGCGGTTCTTGGGTCGGGGGACCCCCCCATGGCGTGAGGAGAGGGTGCCCTCCGGGAGATCTTGCGGGGCGGGTGTGTGGTGTTGCTAGCTGAGGCTGTTGGGTGGGTACCCCCGAGCGGCCGGGGAATCTCCTCCCTTCTCGAGCGACCGCCCGCGTCG TCCGCCATGGCCGGCAGCGACGAGGTCAACCGCAACGAGTGCAAGACGGTGGTGCCGCTCCACACATGGGTGCTCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGCGGGACCTCGGGGAGTACCTGGA CAGGAGGGTGCCGGCGA ]
[+] EMBL BI798708 [ CGGGGGA GGCGGTTCTT GGTCGGGGGACCCCCCCATGGCGTGAGGAGAGGGTGCCCTCCGGGAGATCTTGCGGGGCGGGTGTGTGGTGTTGCTAGCTGAGGCTGTTGGGTGGGTACCCCCGAGCGGCCGGGGAATCTCCTCCCTTCTCGAGCGACCGCCCGCGTCGCTCCGCCATGGCCGGCAGCGACGAGGTCAACCGCAACGAGTGCAAGACGGTGGTCCCGCTCCACACATGGGTGCTCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGC GGCGGACGGGACGTTCGACCGGGACCTCGGGGAGTACCTGGACCAGGA GGTGCCG ]
[+] EMBL CB674742 [ TGAGGCTGTTGGGTGGGTACCCCCGAGCGGCCGGGGAATCTCCTCCCTTCTCGAGCGACCGCCCGCGTCGCTCCGCCATGGCCGGCAGCGACGAGGTCAACCGCAACGAGTGCAAGACGGTGGTGCCGCTCCACACATGGGTGCTCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGCGGGACCTCGGGGAGTACCTGGA CAGGAGGGTGCCGGCGAACGCGCGGCCGCTGGAGGGGGTGTCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGGCGGCGGCGGAGGGTGACGCGGAGGAGGGGGCGGCGGCGGTGACGCGGCCCATCCTTGAGTTCCTGACGGACGCGCCAGCGGCGGAGCCGTTCCCGGTGATCATATTCTTCCACGGCGGCAGCTTCGTGCACTCGTCGGCCAGCTCGACCATCTACGACAGTCTGTGCCGCCGGTTCGTGAAGCTGAGCAAGGGCGTCGTGGTGTCCGTCAACTACCGGCGCGCGCCGGAGCACCGCTACCCGTGCGCGTACGACGACGGGTGGACCGCGCTCAAGTGGGTCATGTCGCAGCCGTTCATGCGCAGCGGCGGCGACGCGCAGGCCCGCGTGTTCCTCTCCGGCGACAGCTCCGGCGGCAACATCGCCCACCACGTCGCCGTCC ]
[+] EMBL AU091751 [ TGTCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGGCGGCGGCGGAGGGTGACGCGGAGNAGGGGGCGGCGGCGGTGACGCGGCCCATCCTTGAGTTCCTGACGGACGCGCCA C GCGGAGCCTTTCCCGGTGATCATATTCTTCCACGGCGGCAGCTTCGTGCACTCGTCGGCCAGCTCGACCATCTACGACAGTCTGTGCCGCCGGTTCGTGAAGCTGAGCAAGGGCGTCGTGGTGTCCGTCAACTACCGGCGCGCGCCGGAGCACCGCTACCCGTGCGCGTACGACGACGGGTGGACCGCGCTCAAGTGGGTCATGTCGCAGCCGTTCATGCGCA CGGCGGCGACGCGCAGGCCCGCGTGTTCCTC ]
[+] EMBL AU101435 [ TCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGGCGGCGGCGGAGGGTGACGCGGAGGAGGGGGCGGCGGCGGTGACGCGGCCCATCCTTGAGTTCCTGACGGACGCGCCA C GCGGAGCNTNTCCCGGTGATCATATTCTTCCACGGCGGCAGCTTCGTGCACTCGTCGGCCAGCTCGACCATCTACGACAGTCTGTGCCGCCGGTTCGTGAAGCTGAGCAAGGGCGTCGTGGTGTCCGTCAACTACCGGCGCGCGCCGGAGCACCGCTACCCGTGCGCGTACGACGACGGGTGGACCGCGCTCAAGTGGG ]
consensusID : consensus_10914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence
[GGTTGTTTCTTTTTTGTCCGAGCAGGAATCAGCAAAGAAAAACATACGCATATGCACACCGATTGATTGATTGCTCTGGTTTCGCTTCCGCGATTGCGAGATAGTAGTAGTAGTAGAGGGTCGCTCACTGTGGTTGTGGTTGTGGTTGGTTGTGGTGCAGACGGTGGTGCCGCTCCACACATGGGTGCTCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGCGGGACCTCGGGGAGTACCTGGATAGGAGGGTGCCGGCGAACGCGCGGCCGCTGGAGGGGGTGTCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGGCGGCGGCGGAGGGTGACGCGGAGGAGGGGGCGGCGGCGGTGACGCGGCCCA]
[-] EMBL AK111484 [GGTTGTTTCTTTTTTGTCCGAGCAGGAATCAGCAAAGAAAAACATACGCATATGCACACCGATTGATTGATTGCTCTGGTTTCGCTTCCGCGATTGCGAGATAGTAGTAGTAGTAGAGGGTCGCTCACTGTGGTTGTGGTTGTGGTTGGTTGTGGTGCAGACGGTGGTGCCGCTCCACACATGGGTGCTCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGCGGGACCTCGGGGAGTACCTGGATAGGAGGGTGCCGGCGAACGCGCGGCCGCTGGAGGGGGTGTCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGGCGGCGGCGGAGGGTGACGCGGAGGAGGGGGCGGCGGCGGTGACGCGGCCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10914#0 TCGTTGCCTTCTCCGTGCCGAACACCACAGCGCGCGCGCGGGGGGGCGGGTTCGGCTCTC 60
consensus_10914#1 ------------------------------------------------------------
consensus_10914#0 TCGCGAGCTCTGCTCTCTGTCCCTCTCTCTCTCTCGCCGCCTCCTGCCTCGCACACTCGA 120
consensus_10914#1 ------------------------------------------------------------
consensus_10914#0 GATTGGTGGGGTGGATTTGGGGGAGGAGGAGGTGGGGTGGGGTGGGGTGGTTGCTGAGGA 180
consensus_10914#1 ------------------------------------------------------------
consensus_10914#0 GGAGGTGGTGGTGAGAGATCGGGCGGCGGGTTGCCGCCGGAGGAGGTAGAGGGATCCTCG 240
consensus_10914#1 ------------------------------------------------------------
consensus_10914#0 GGGGAGGGCGGTTCTTGGGTCGGGGGACCCCCCCATGGCGTGAGGAGAGGGTGCCCTCCG 300
consensus_10914#1 ------------------------GGTTGTTTCTTTTTTGTCCGAGCAGGAATCAGCAAA 36
** * * ** * *** *
consensus_10914#0 GGAGATCTTGCGGGGCGGGTGTGTGGTGTTGCTAGCTGAGGCTGTTGGGTGGGTACCCCC 360
consensus_10914#1 GAAAAACATACG---CATATGCACACCGAT--TGATTGA--TTGCT--CTGGTTTCGCTT 87
* * * * * ** * ** * * * *** ** * *** * * *
consensus_10914#0 GAGCGGCCGGGGAATCTCCTCCCTTCTCGAGCGACCGCCCGCGTCGCTCCGCCATGGCCG 420
consensus_10914#1 CCGCGATTGCGAGATAGTAGTAGTAGTAGAGGG----------TCGCTC-ACTGTGGTTG 136
*** * * ** * * *** * ****** * *** *
consensus_10914#0 GCAGCGACGAGGTCAACCGCAACGAGTGCAAGACGGTGGTGCCGCTCCACACATGGGTGC 480
consensus_10914#1 ---TGGTTGTGGTTGGTTGTG----GTGCA-GACGGTGGTGCCGCTCCACACATGGGTGC 188
* * *** * ***** *****************************
consensus_10914#0 TCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGC 540
consensus_10914#1 TCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGC 248
************************************************************
consensus_10914#0 GGGACCTCGGGGAGTACCTGGACAGGAGGGTGCCGGCGAACGCGCGGCCGCTGGAGGGGG 600
consensus_10914#1 GGGACCTCGGGGAGTACCTGGATAGGAGGGTGCCGGCGAACGCGCGGCCGCTGGAGGGGG 308
********************** *************************************
consensus_10914#0 TGTCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGG 660
consensus_10914#1 TGTCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGG 368
************************************************************
consensus_10914#0 CGGCGGCGGAGGGTGACGCGGAGGAGGGGGCGGCGGCGGTGACGCGGCCCATCCTTGAGT 720
consensus_10914#1 CGGCGGCGGAGGGTGACGCGGAGGAGGGGGCGGCGGCGGTGACGCGGCCCA--------- 419
***************************************************
consensus_10914#0 TCCTGACGGACGCGCCAGCGGCGGAGCCGTTCCCGGTGATCATATTCTTCCACGGCGGCA 780
consensus_10914#1 ------------------------------------------------------------
consensus_10914#0 GCTTCGTGCACTCGTCGGCCAGCTCGACCATCTACGACAGTCTGTGCCGCCGGTTCGTGA 840
consensus_10914#1 ------------------------------------------------------------
consensus_10914#0 AGCTGAGCAAGGGCGTCGTGGTGTCCGTCAACTACCGGCGCGCGCCGGAGCACCGCTACC 900
consensus_10914#1 ------------------------------------------------------------
consensus_10914#0 CGTGCGCGTACGACGACGGGTGGACCGCGCTCAAGTGGGTCATGTCGCAGCCGTTCATGC 960
consensus_10914#1 ------------------------------------------------------------
consensus_10914#0 GCAGCGGCGGCGACGCGCAGGCCCGCGTGTTCCTCTCCGGCGACAGCTCCGGCGGCAACA 1020
consensus_10914#1 ------------------------------------------------------------
consensus_10914#0 TCGCCCACCACGTCGCCGTCCGCGCCGCCGACGAGGGCGTCAAGGTCTGCGGCAACATCC 1080
consensus_10914#1 ------------------------------------------------------------
consensus_10914#0 TGCTCAACGCCATGTTCGGCGGCACCGAGCGCACGGAGTCGGAGCGGCGGCTCGACGGCA 1140
consensus_10914#1 ------------------------------------------------------------
consensus_10914#0 AGTACTTCGTGACGCTCCAGGACAGGGACTGGTACTGGAAGGCGTACCTGCCGGAGGACG 1200
consensus_10914#1 ------------------------------------------------------------
consensus_10914#0 CCGACCGGGACCATCCGGCGTGCAACCCGTTCGGCCCGAACGGCCGGCGGCTCGGGGGCC 1260
consensus_10914#1 ------------------------------------------------------------
consensus_10914#0 TCCCCTTCGCCAAGAGCCTCATCATCGTGTCGGGCCTGGACCTCACCTGCGACCGGCAGC 1320
consensus_10914#1 ------------------------------------------------------------
consensus_10914#0 TCGCCTACGCCGACGCCCTCCGGGAGGACGGCCACCACGTCAAGGTTGTCCAATGCGAGA 1380
consensus_10914#1 ------------------------------------------------------------
consensus_10914#0 ACGCCACGGTGGGGTTCTACCTGTTGCCCAACACCGTCCACTACCACGAGGTCATGGAGG 1440
consensus_10914#1 ------------------------------------------------------------
consensus_10914#0 AGATCTCCGACTTCCTCAACGCTAACCTCTACTACTAGT 1479
consensus_10914#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||