cluster # 10924

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10924 cluster # 10924 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10924#0 length = 662 sequences # 7

consensus_10924#1 length = 219 sequences # 1

consensusID : consensus_10924#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 662
fasta sequence

                              [AGGGAGCGATCGAGAAAAACCCTCGCTGCTCTCCTCCCCCTCCCCCTCCCCCTCCGCCGCCACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACC-GCGAGCTCCTCGCCATGGCGTCCATGATGCAACC-GCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGGGCGCGCGCAGGTGGTGAGCAACATCAACGCGTGCACGGTGGTGGCGGACACGGTGCGCACCACG-CTGGGGCCACGCGGCATGGACAAGCTCATCCACGACGACAAGGGCGGCACCACCATCTCCAACGACGGCGCCACCATCATGCGCCTCCTCGACATCATCCACCCCGCCGCCAAGATCCTCGTCGACATCGCCAAGTCCCAGGACTCCGAGGTTGGTGATGGAAC-TACCACAGTGGTGCTTCTTGCT-GCTGAGTTCCTGAAAGAAGCAAAACCTTACATTGAGGACGGATACATCCGCATAGTCTAATTCGCAGTTATAGGACTGCTGGNCATTTGGNAATTTGAAAAGGTCAAAGATTGGCCAATTAGCATTGAAGGGAAAAGCCTTGAGGAAAAGAAGGAATTGCNTAGCCAAGTGTGTGAACAAAANTCTCATCAAAAGTTGAAANGGTGGCGAGAAAGAATTTTTTGCNTCTATG]

[+] EMBL CF305964             [AGGGAGCGATCGAGAAAAACCCTCGCTGCTCTCCTCCCCCTCCCCCTCCCCCTCCGCCGCCACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACC GCGAGCTCCTCGCCATGGCGTCCATGATGCAACC GTTTAT AACTTGCTGAAGGAGGGGACGGACACGTCGCAGGGGCGCTCTCTTGTGGTGAGCAACATCAACGCGTGCACGGTGGTGGCGGACACGGTGCGCACCACG CTGGGGCCACGCGGCATGGACAAGCTCATCCACGACGACAAGGGCGGCACCACCATCTCCAACGACGGCGCCACCATCATGCGCCTCCTCGACAT                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C72536               [                 AACCCTCGCTGCTCTCCTCCCCCTCCCNGTCCCCCTCCGCCGCCACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACC GCGAGCTCCTCGCCATGGCGTCCATGATGCAACC GCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGGGCGCGCGCAGGTGGTGAGCAACATCAACGCGTGCACGGTGGTGGCGGACANGGTGCGNACCACGTTTGGGGCCACG                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL C26445               [                   CCCTCGCTGCTCTCCTCCCCCTCCCCCTCCCCCTCCGCCGCCACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACC GCGAGCTCCTCGCCATGGCGTCCATGATGCAACC GCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGGGCGCGCGCAGGTGGTGAGCAACATCAACGCGTGCACGGTGGTGGCGGACACGGTGCGCACCACG CTGGGGCCACGCGGCATGGACAAGCTCATCCACGACGACAAGGGCGGCACCACCATCTNCAACGACGGCGCCACCATCATGCGCCTNCTCGACATCATCCACCCCGTCGCCAAGATCCTCGTCGAC                                                                                                                                                                                                                                                                                                      ]
[+] EMBL C27094               [                        GCTGCTCTCCTCCCCCTCCCCCTCCCCCTCCGCCGCCACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACC GCGAGCTCCTCGCCATGGCGTCCATGATGCAACC GCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGGGCGCGCGCAGGTGGTGAGCAACATCAACGCGTGCACAGTGGTGGCGGACACGGTGCGCANCACG CTGGGGCCACGCGGCATGGACAAGCTCATNCACGACGACAAGGGCGGCACCACCATCTTCAACGACGGCGNCACCATCATGCGCTTCTTCGACA                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU222812             [                        GCTGCTCTCCTCCCCCTCCCCCTCCCCCTCCGCCGCCACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACCTGCGAGCTCCTCGCCATGGCGTCCATGATGCAACCTGCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGGGCGCGCGCAGGTGGTGAGCAACATCAACGCGTGCACGGTGGTGGCGGACACGGTGCGCACCACG CTGGGGCCACGCGGCATGGACAAGCTCATCCACGACGACAAGGGCGGCACCACCATCTCCAACGACGGCGCCACCATCATGCGCCTCCTCGACATCATCCACCCCGCCGCCAAGATCCTCGTCGACATCGCCAAGTCCCAGGACTCCGAGGTTGGTGATGGAAC TACCACAGTGGTGCTTCTTGCT GCTGAGTTCCTGAAAGAAGCAAAACCTTACATTGAGGACG                                                                                                                                                                                                ]
[+] EMBL CF305690             [                          TGCTCTCCTCCCCCTCCCCCTCCCCCTCCGCCGCCACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACC GCGAGCTCCTCGCCATGGCGTCCATGATGCAACC GCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGGGCGCGCGCAGGTGGTGAGCAACATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU056199             [                                                                     TCTCCATCTCCCCGCCACCAAATCCCCCCGAAACC GCGAGCTCCTCGCCATGGCGTCCATGATGCAACC GCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGGGCGCGCGCAGGTGGTGAGCAACATCAACGCGTGCACGGTGGTGGCGGACACGGTGCGCACCACG CTGGGGCCACGCGGCATGGACAAGCTCATCCACGACGACAAGGGCGGCACCACCATCTCCAACGACGGCGCCACCATCATGCGCCTCCTCGACATCATCCACCCCGCCGCCAAGATCCTCGTCGACATCGCCAAGTCCCAGGACTCCGAGGTTGGTGATGGAACTTACCACAGTGGTGCTTCTTGCTGGCTGAGTTCCTGAAAGAAGCAAAACCTTACATTGAGGACGGATACATCCGCATAGTCTAATTCGCAGTTATAGGACTGCTGGNCATTTGGNAATTTGAAAAGGTCAAAGATTGGCCAATTAGCATTGAAGGGAAAAGCCTTGAGGAAAAGAAGGAATTGCNTAGCCAAGTGTGTGAACAAAANTCTCATCAAAAGTTGAAANGGTGGCGAGAAAGAATTTTTTGCNTCTATG]




>consensus_10924#0
AGGGAGCGATCGAGAAAAACCCTCGCTGCTCTCCTCCCCCTCCCCCTCCCCCTCCGCCGC
CACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACCGCGAGCTCCTCGCCAT
GGCGTCCATGATGCAACCGCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGG
GCGCGCGCAGGTGGTGAGCAACATCAACGCGTGCACGGTGGTGGCGGACACGGTGCGCAC
CACGCTGGGGCCACGCGGCATGGACAAGCTCATCCACGACGACAAGGGCGGCACCACCAT
CTCCAACGACGGCGCCACCATCATGCGCCTCCTCGACATCATCCACCCCGCCGCCAAGAT
CCTCGTCGACATCGCCAAGTCCCAGGACTCCGAGGTTGGTGATGGAACTACCACAGTGGT
GCTTCTTGCTGCTGAGTTCCTGAAAGAAGCAAAACCTTACATTGAGGACGGATACATCCG
CATAGTCTAATTCGCAGTTATAGGACTGCTGGNCATTTGGNAATTTGAAAAGGTCAAAGA
TTGGCCAATTAGCATTGAAGGGAAAAGCCTTGAGGAAAAGAAGGAATTGCNTAGCCAAGT
GTGTGAACAAAANTCTCATCAAAAGTTGAAANGGTGGCGAGAAAGAATTTTTTGCNTCTA
TG

consensusID : consensus_10924#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 219
fasta sequence

                              [CAGTGGTGCTTCTTGCTGCTGAGTTCCTGAAAGAAGCAAAACCTTACATTNAGGNCGGAGTACATCCGNATAGGCTAATTCGCAGTTATAGGGCTGCTTGCCNNTTGGCAATTNNAAAGGTCAAAGACTTTGNCACTAGCATTTAAGGGAAAAGCCTTTNAGGAAAAGAAGGAATTGCTAGCCAAGTGTGCTGCAACAACACTCTCATCAAAGTTGATA]

[+] EMBL OSS0947A             [CAGTGGTGCTTCTTGCTGCTGAGTTCCTGAAAGAAGCAAAACCTTACATTNAGGNCGGAGTACATCCGNATAGGCTAATTCGCAGTTATAGGGCTGCTTGCCNNTTGGCAATTNNAAAGGTCAAAGACTTTGNCACTAGCATTTAAGGGAAAAGCCTTTNAGGAAAAGAAGGAATTGCTAGCCAAGTGTGCTGCAACAACACTCTCATCAAAGTTGATA]




>consensus_10924#1
CAGTGGTGCTTCTTGCTGCTGAGTTCCTGAAAGAAGCAAAACCTTACATTNAGGNCGGAG
TACATCCGNATAGGCTAATTCGCAGTTATAGGGCTGCTTGCCNNTTGGCAATTNNAAAGG
TCAAAGACTTTGNCACTAGCATTTAAGGGAAAAGCCTTTNAGGAAAAGAAGGAATTGCTA
GCCAAGTGTGCTGCAACAACACTCTCATCAAAGTTGATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10924#0      AGGGAGCGATCGAGAAAAACCCTCGCTGCTCTCCTCCCCCTCCCCCTCCCCCTCCGCCGC 60
consensus_10924#1      ------------------------------------------------------------
                                                                                   

consensus_10924#0      CACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACCGCGAGCTCCTCGCCAT 120
consensus_10924#1      ------------------------------------------------------------
                                                                                   

consensus_10924#0      GGCGTCCATGATGCAACCGCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGG 180
consensus_10924#1      ------------------------------------------------------------
                                                                                   

consensus_10924#0      GCGCGCGCAGGTGGTGAGCAACATCAACGCGTGCACGGTGGTGGCGGACACGGTGCGCAC 240
consensus_10924#1      ------------------------------------------------------------
                                                                                   

consensus_10924#0      CACGCTGGGGCCACGCGGCATGGACAAGCTCATCCACGACGACAAGGGCGGCACCACCAT 300
consensus_10924#1      ------------------------------------------------------------
                                                                                   

consensus_10924#0      CTCCAACGACGGCGCCACCATCATGCGCCTCCTCGACATCATCCACCCCGCCGCCAAGAT 360
consensus_10924#1      ------------------------------------------------------------
                                                                                   

consensus_10924#0      CCTCGTCGACATCGCCAAGTCCCAGGACTCCGAGGTTGGTGATGGAACTACCACAGTGGT 420
consensus_10924#1      -----------------------------------------------------CAGTGGT 7
                                                                            *******

consensus_10924#0      GCTTCTTGCTGCTGAGTTCCTGAAAGAAGCAAAACCTTACATTGAGGACGGA-TACATCC 479
consensus_10924#1      GCTTCTTGCTGCTGAGTTCCTGAAAGAAGCAAAACCTTACATTNAGGNCGGAGTACATCC 67
                       ******************************************* *** **** *******

consensus_10924#0      GCATAGTCTAATTCGCAGTTATAGGACTGCTGGNCATTTGGNAATTTGAAAAGGTCAAAG 539
consensus_10924#1      GNATAGGCTAATTCGCAGTTATAGGGCTGCTTGCCNNTTGGCAATTNNAAA-GGTCAAAG 126
                       * **** ****************** ***** * *  **** ****  *** ********

consensus_10924#0      ATTGGCCAATTAGCATTGAAGGGAAAAGCCTT-GAGGAAAAGAAGGAATTGCNTAGCCAA 598
consensus_10924#1      ACTTTGNCACTAGCATTTAAGGGAAAAGCCTTTNAGGAAAAGAAGGAATTGCT-AGCCAA 185
                       * *     * ******* **************  ******************  ******

consensus_10924#0      GTGTGTG--AACAAAANTCTCATCAAAAGTTGAAANGGTGGCGAGAAAGAATTTTTTGCN 656
consensus_10924#1      GTGTGCTGCAACAACACTCTCATCAAA-GTTGATA------------------------- 219
                       *****    ***** * ********** ***** *                         

consensus_10924#0      TCTATG 662
consensus_10924#1      ------