These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10930#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 617 fasta sequence [TACTTCGTGCTGCATGTGTCGAATTCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTAGCTAGCTAGTGCTATTACAGGATTGGTGAGCTACTCGGGTTCC-TCTCCCACGGATTTGCCTGGCCGCCATGG-GCGGCGCCGAAGGTCTCCGCGGCGACGGTGGCACTCCCGGCCAAGCTGACAGCGCCGCCGATGGGTTGGATGAATGTCGGGAAGCCCC-TGCTTGTCGACGCGCCTGTCGGGCTCACTCCAAGCCCCAAGAAATCTAGTGTTGCCGGCTTG-GCACTGAACAG-TGTGGACTGACCCAT-CATGAGCTCCGGCAAGCTCACCGGACCGCCTGTCGCGTCGTATGGTAACCCGAGGCCGAGCCCGGAGGA-CAGCATTGGGGATGGCTCCGGCTGTAACCGCGGCGGCCATTCGGGCAGCGAACTCGCCGGGAGTGGCACTTGCATGGTTTCTTGGTGGTGATGGTGGTGGTGCTGTTGCTGCTGCCCTGACGACGAAGGCGGCGCCGACGATGACGATGACATGTCGAGGCCCAGGCAGCGGAGAAAGGACGAGCTAGACGAGGTGGCGCCCATCTGCGCGGCCTTCTGAAGCAACGCCGTGG] [+] EMBL CB644651 [TACTTCGTGCTGCATGTGTCGAATTCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTAGCTAGCTAGTGCTATTACAGGATTGGTGAGCTACTCGGGTTCC TCTCCCACGGATTTGCCTGGCCGCCATGG GCGGCGCCGAAGGTCTCCGCGGCGACGGTGGCACTCCCGGCCAAGCTGACAGCGCCGCCGATGGGTTGGATGAATGTCGGGAAGCCCC TGCTTGTCGACGCGCCTGTCGGGCTCACTCCAAGCCCCAAGAAATCTAGTGTTGCCGGCTTG GCACTGAACAG TGTGGACTGACCCAT CATGAGCTCCGGCAAGCTCACCGGACCGCCTGTCGCGTCGTATGGTAACCCGAGGCCGAGCCCGGAGGA CAGCATTGGGGATGGCTCCGGCTGTAACCGCGGCGGCCATTCGGGCAGCGAACTCGCCGGGAGTGGCACTTGCATGGTTTCTTGGTGGTGATGGTGGTGGTGCTGTTGCTGCTGCCCTGACGACGAAGGCGGCGCCGACGATGACGATGACATGTCGAGGCCCAGGCAGCGGAGAAAGGACGAGCTAGACGAGGTGGCGCCCATCTGCGCGGCCTTCTGAAGCAACGCCGTGG] [+] EMBL CB685409 [TACTTCGTGCTGCATGTGTCGAATTCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTAGCTAGCTAGTGCTATTACAGGATTGGTGAGCTACTCGGGTTCC TCTCCCACGGATTTGCCTGGCCGCCATGG GCGGCGCCGAAGGTCTCCGCGGCGACGGTGGCACTCCCGGCCAAGCTGACAGCGCCGCCGATGGGTTGGATGAATGTCGGGAAGCCCC TGCTTGTCGACGCGCCTGTCGGGCTCACTCCAAGCCCCAAGAAATCTAGTGTTGCCGGCTTG GCACTGAACAG TGTGGACTGACCCAT CATGAGCTCCGGCAAGCTCACCGGACCGCCTGTCGCGTCGTATGGTAACCCGAGGCCGAGCCCGGAGGA CAGCATTGGGGATGGCTCCGGCTGTAACCGCGGCGGCCATTCGGGCAGCGAACTCGCCGGGAGTGGCACTTGCATGGTTTCTTGGTGGTGATGGTGGT ] [+] EMBL CB653342 [TACTTCGTGCTGCATGTGTCGAATTCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTAGCTAGCTAGTGCTATTACAGGATTGGTGAGCTACTCGGGTTCC TCTCCCACGGATTTGCCTGGCCGCCATGG GCGGCGCCGAAGGTCTCCGCGGCGACGGTGGCACTCCCGGCCAAGCTGACAGCGCCGCCGATGGGTTGGATGAATGTCGGGAAGCCCC TGCTTGTCGACGCGCCTGTCGGGCTCACTCCAAGCCCCAAGAAATCTAGTGTTGCCGGCTTG GCACTGAACAG TGTGGACTGACCCAT CATGAGCTCCGGCAAGCT ] [-] EMBL BI812480 [ ACTTCGTGCTGCATGTGTCGAATTCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTAGCTAGCTAGTGCTATTACAGGATTGGTGAGCTACTCGGGTTCC TCTCCCACGGATTTGCCTGGCCGCCATGGTGCGGCGCCGAAGGTCTCCGCGGCGACGGTGGCACTCCCGG CAAGCTGACAGCGCCGCCGATGGGTTGGATGAATGTCGGGAAGCCCC TGCTTGTCGACGCGCCTGTCGGGCTCACTCCAAGCCCCAAGAAATCTAGTGTTGCCGGCTTGTGCACTGAACAGTTGTGGACTGACCCATACATGAGCTCCGGCAAGCTCACCGGACCGCCTGTCGCGTCGTATGGTAACCCGAGGCCGAGCCCGGAGGA CAGCATTGGGGATGGCTCCGG TGTAACCG ] [-] EMBL BI812183 [ ACTTCGTGCTGCATGTGTCGAATTCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTAGCTAGCTAGTGCTATTACAGGATTGGTGAGCTACTCGGGTTCCGTCTCCCACGGATTTGCCTGGCCGCCATGG GCGGCGCCGAAGGTCTCCGCGGCGACGGTGGCACTCCCGGCCAAGCTGACAGCGCCGCCGATGGGTTGGATGAATGTCGGGAAGCCCC TGCTTGTCGACGCGCCTGTCGGGCTCACTCCAAGCCCCAAGAAATCTAGTGTTGCCGGCTTG GCACTGAACAG TGTGGACTGACCCAT CATGAGCTCCGGCAAGCTCACCGGACCG CTGTCGCGTCGTATGGTAACCCGAGG CGAGCCCGGAGGACCAG ATTGG ] [-] EMBL AU166401 [ ACTTNGTGCTGCATGTGTCNAATTCACAGGGGTTTGCTACTTGGNGCTAATTGCTACCAGTTGCTAGCTAGCTAGNGCTATTACAGGATTGGTGAGCTACTCGGGTTCC TCTCCCACGGATTTGCCTGGCCGCCATGG GCGGNGCCGAAGGTCTCCGCGGCGACGGTGGCACTCCCGGCCAAGCTGACAGCGCCGCCGATGGGTTGGATGAATGTCGGGAAGCCCCTTGNTTGTCGACGCGCCTGTCGGGCTCACTCCAAGCCCCAAGAAATNTA ] consensusID : consensus_10930#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [TTTTTTTTTTCACTTGTAANTTCGGACTAAGCTAAATAAACAAAAGAACTGAGGTTGGTCAAATGGAAAAAACAAAAGTTGGAAGATACTTGTAAATTGTAACTTGAACCTGGCTGTTCCACTATTTTCACCGTCTTACTTCGTGCTGCATGTGTCGAATTCACAGNTGGTTTGGTACTTGGTGCTAATTGCTACCAGTTGTAGCTAGCTAGTGCTATTACAGGATTGGTTGAGCTACTCGGGTTCCTCTCCCACGGATTTGCCTGGCCTGCCATGGTGCTGTGTGCCGAAGTGTCTCCGCTGTGCTGACGTGTGGACTCCCTGGCAAGCTGACAGGTGCCTGCGATGGGTTTGGATGAATTGTCGGGAAGCCCCTGCTTGTCGAGCGCCTGTCGGGCTACACTCCAAGCCCAAGAAATCTAGTGTTTGGCTGTGCTTGGCACTGAACAAGTTGTGGATTGACCATCCATGATGCTCCTGGAAGCTCACCTGAG] [-] EMBL BM420482 [TTTTTTTTTTCACTTGTAANTTCGGACTAAGCTAAATAAACAAAAGAACTGAGGTTGGTCAAATGGAAAAAACAAAAGTTGGAAGATACTTGTAAATTGTAACTTGAACCTGGCTGTTCCACTATTTTCACCGTCTTACTTCGTGCTGCATGTGTCGAATTCACAGNTGGTTTGGTACTTGGTGCTAATTGCTACCAGTTGTAGCTAGCTAGTGCTATTACAGGATTGGTTGAGCTACTCGGGTTCCTCTCCCACGGATTTGCCTGGCCTGCCATGGTGCTGTGTGCCGAAGTGTCTCCGCTGTGCTGACGTGTGGACTCCCTGGCAAGCTGACAGGTGCCTGCGATGGGTTTGGATGAATTGTCGGGAAGCCCCTGCTTGTCGAGCGCCTGTCGGGCTACACTCCAAGCCCAAGAAATCTAGTGTTTGGCTGTGCTTGGCACTGAACAAGTTGTGGATTGACCATCCATGATGCTCCTGGAAGCTCACCTGAG] consensusID : consensus_10930#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence [TTGCTAACTGAACCTGGTGTTCCACTATTTTCACCGTCTTACTTCGTGCTGCATGTGTCGAATTCCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTACCACTAGTGCTATTCCCAGGCATTGGTGAGCTACTCGGGTTCCTCTCCCACGGATTTGCCTGGCCTGCCATGGTGCGGCGCCGCAAGGTCTCCGCTGTGCGACTGGTGGCACTCCCTGTGCAAGCATGCACAGCGCCGCCGC] [-] EMBL BQ907878 [TTGCTAACTGAACCTGGTGTTCCACTATTTTCACCGTCTTACTTCGTGCTGCATGTGTCGAATTCCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTACCACTAGTGCTATTCCCAGGCATTGGTGAGCTACTCGGGTTCCTCTCCCACGGATTTGCCTGGCCTGCCATGGTGCGGCGCCGCAAGGTCTCCGCTGTGCGACTGGTGGCACTCCCTGTGCAAGCATGCACAGCGCCGCCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10930#1 TTTTTTTTTTCACTTGTAANTTCGGACTAAGCTAAATAAACAAAAGAACTGAGGTTGGTC 60 consensus_10930#2 ------------------------------------------------------------ consensus_10930#0 ------------------------------------------------------------ consensus_10930#1 AAATGGAAAAAACAAAAGTTGGAAGATACTTGTAAATTGTAACTTGAACCTGGCTGTTCC 120 consensus_10930#2 ------------------------------------TTGCTAACTGAACCTGG-TGTTCC 23 consensus_10930#0 ------------------------------------------------------------ consensus_10930#1 ACTATTTTCACCGTCTTACTTCGTGCTGCATGTGTCGAATTCACAGNTGGTTTGGTACTT 180 consensus_10930#2 ACTATTTTCACCGTCTTACTTCGTGCTGCATGTGTCGAATTCCACAGTGGTTTGCTACTT 83 consensus_10930#0 ----------------TACTTCGTGCTGCATGTGTCGAATTCACA-GTGGTTTGCTACTT 43 ************************** ******* ***** consensus_10930#1 GGTGCTAATTGCTACCAGTTG-TAGCTAGCTAGTGCTATTAC-AGGATTGGTTGAGCTAC 238 consensus_10930#2 GGTGCTAATTGCTACCAGTTG-CTACCA-CTAGTGCTATTCCCAGGCATTGGTGAGCTAC 141 consensus_10930#0 GGTGCTAATTGCTACCAGTTGCTAGCTAGCTAGTGCTATTAC-AGGATTGG-TGAGCTAC 101 ********************* * * *********** * *** * * ******** consensus_10930#1 TCGGGTTCCTCTCCCACGGATTTGCCTGGCCTGCCATGGTGCTGTGTGCCGAAGTGTCTC 298 consensus_10930#2 TCGGGTTCCTCTCCCACGGATTTGCCTGGCCTGCCATGGTGCGGCG--CCGCAAGGTCTC 199 consensus_10930#0 TCGGGTTCCTCTCCCACGGATTTGCCTGGCC-GCCATGG-GCGGCG--CCGAAG-GTCTC 156 ******************************* ******* ** * * *** * ***** consensus_10930#1 CGCTGTGCTGACGTGTGG-ACTCCCTG-GCAAGCTGACA-GGTGCCTGCGATGGGTTTGG 355 consensus_10930#2 CGCTGTGC-GACTGGTGGCACTCCCTGTGCAAGCATGCACAGCGCCGCCGC--------- 249 consensus_10930#0 CGCGGCG---ACG-GTGGCACTCCCGG-CCAAGCTGACA--GCGCCGCCGATGGGTT-GG 208 *** * * ** **** ****** * ***** ** * *** ** consensus_10930#1 ATGAATTGTCGGGAAGCCCCTGCTTGTCGA-GCGCCTGTCGGGCTACACTCCAAGCCC-A 413 consensus_10930#2 ------------------------------------------------------------ consensus_10930#0 ATGAAT-GTCGGGAAGCCCCTGCTTGTCGACGCGCCTGTCGGGCT-CACTCCAAGCCCCA 266 consensus_10930#1 AGAAATCTAGTGTTTGGCTGTGCTTGGCACTGAACAAGTTGTGGATTGACCATCCATGAT 473 consensus_10930#2 ------------------------------------------------------------ consensus_10930#0 AGAAATCTAGTGTT--GCCG-GCTTGGCACTGAACAG--TGTGGACTGACCCATCATGA- 320 consensus_10930#1 GCTCCTGGAAGCTCACCTGAG--------------------------------------- 494 consensus_10930#2 ------------------------------------------------------------ consensus_10930#0 GCTCCGGCAAGCTCACCGGACCGCCTGTCGCGTCGTATGGTAACCCGAGGCCGAGCCCGG 380 consensus_10930#1 ------------------------------------------------------------ consensus_10930#2 ------------------------------------------------------------ consensus_10930#0 AGGACAGCATTGGGGATGGCTCCGGCTGTAACCGCGGCGGCCATTCGGGCAGCGAACTCG 440 consensus_10930#1 ------------------------------------------------------------ consensus_10930#2 ------------------------------------------------------------ consensus_10930#0 CCGGGAGTGGCACTTGCATGGTTTCTTGGTGGTGATGGTGGTGGTGCTGTTGCTGCTGCC 500 consensus_10930#1 ------------------------------------------------------------ consensus_10930#2 ------------------------------------------------------------ consensus_10930#0 CTGACGACGAAGGCGGCGCCGACGATGACGATGACATGTCGAGGCCCAGGCAGCGGAGAA 560 consensus_10930#1 --------------------------------------------------------- consensus_10930#2 --------------------------------------------------------- consensus_10930#0 AGGACGAGCTAGACGAGGTGGCGCCCATCTGCGCGGCCTTCTGAAGCAACGCCGTGG 617 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||