These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 756 fasta sequence [GTACAGCAAACACCAACTCAGCTAGCTATACTCTACTCATCTTCTCTGCCAGCTGCTACTACACCAACCAGAGCTAATCAAGTAACAATGGCGGGAAGAGGCAGTGCCATGGCGGCGGTTGGTGTGCTGGTGCTCCTCTGCGTGCTCCTCCACGGCGAGATGGCCGAGTCGGCGGTGTTCACCGTCGGCGACCGCGGCGGGTGGGGGATGGGGGCGGGATCGTGGGCGAACGGGAAGCGGTTCAAGGCCGGCGACGTGCTGGTGTTCAAGTACGACTCGTCGGCGCACAACGTGGTGGCGGTGAACGCCGCCGGGTACAAGGGCTGCACCGCCGCCCCGCGCGGCGCCAAGGTGTACAAGTCCGGCAACGACCGCGTCACCCTCGCCCGCGGCACCAACTACTTCATCTGCAACTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCGCCGTCACCGCCGCCTAGTTCTTCTTCTTCCTCGTCGTCGTCGTCTCCGTCGCCGGCATGGCGCCATGCCGTCCATCTCAACCAGCTGCTTATTATATCTATATACAAATGTTTGTCGATCGTGTGTGTTCTAACCACCATCAGCTGATTTATAATTCTACGAATGAAGAATACGATCCAATGCATCTATGCATGCATACACACATGGATCAATATATAATAGTTGTACACTTCTTTGAGTGACGGATGTTGTATCCGGTGAAATTTATATACATATAAATATGAATAAAAGCCACATTATGCAAAAAA] [+] EMBL AK062526 [GTACAGCAAACACCAACTCAGCTAGCTATACTCTACTCATCTTCTCTGCCAGCTGCTACTACACCAACCAGAGCTAATCAAGTAACAATGGCGGGAAGAGGCAGTGCCATGGCGGCGGTTGGTGTGCTGGTGCTCCTCTGCGTGCTCCTCCACGGCGAGATGGCCGAGTCGGCGGTGTTCACCGTCGGCGACCGCGGCGGGTGGGGGATGGGGGCGGGATCGTGGGCGAACGGGAAGCGGTTCAAGGCCGGCGACGTGCTGGTGTTCAAGTACGACTCGTCGGCGCACAACGTGGTGGCGGTGAACGCCGCCGGGTACAAGGGCTGCACCGCCGCCCCGCGCGGCGCCAAGGTGTACAAGTCCGGCAACGACCGCGTCACCCTCGCCCGCGGCACCAACTACTTCATCTGCAACTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCGCCGTCACCGCCGCCTAGTTCTTCTTCTTCCTCGTCGTCGTCGTCTCCGTCGCCGGCATGGCGCCATGCCGTCCATCTCAACCAGCTGCTTATTATATCTATATACAAATGTTTGTCGATCGTGTGTGTTCTAACCACCATCAGCTGATTTATAATTCTACGAATGAAGAATACGATCCAATGCATCTATGCATGCATACACACATGGATCAATATATAATAGTTGTACACTTCTTTGAGTGACGGATGTTGTATCCGGTGAAATTTATATACATATAAATATGAATAAAAGC ] [+] EMBL AU058150 [ TCTTCTTCCTCGTCGTCGTCGTCTCCGTCGCCGGCATGGCGCCATGCCGTCCATCTCAACCAGCTGCTTATTATATCTATATACAAATGTTTGTCGATCGTGTGTGTTCTAACCACCATCAGCTGATTTATAATTCTACGAATGAAGAATACGATCCAATGCATCTATGCATGCATACACACATGGATCAATATATAATAGTTGTACACTTCTTTGAGTGACGGATGTTGTATCCGGTGAAATTTATATACATATAAATATGAATAAAAGNCACATTATGCAAAAAA] consensusID : consensus_10933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 755 fasta sequence [CCACCACTCGCCTCACACTCACTCGCTCAGCACTACTTGCACCCCCTAGCTGAGATCAGTAGTAAACGGTCAGTCAATTGTTGCAAAGCGATCAGCTACTGGCGATGGCTCAGGGAAGGGGCAGTGCTGCAGGACGACGCAACGCCGCCGTGCTGGC-GATGGT-CCTCCTCTGCGTGCTCCTCCACGGCGAGCTCGCCGAGTCGGCCGTGTACACCGTCGGCGACCGCGGCGGCTGGGGCTTCAACT-CCGGCGGCTGGCTCAGGGGCAAGCGCTTCCGCGCCGGCGACGTGCTCGTGTTCAAGTACAGCCCGTCGGCGCACAACGTGG-TGGC-GGTGAACGCGGCGGGGTACAAGTCGTGCAGCGCGCCGAGGGGTGCCAAGGTGTACAAGTCGGGCAGCGACCGCGTCA-CCCTGGCGCGCGGCACCAACTACTTCATCTGCAGCTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCGCCGTCACCGCCGCCTGATCGGCCGGCCGGTCGCCGGAGTCCGGCGGGATCGAATGTAGTAGTGGCAATCTCTAAATATCCGGGAAGTAGATCCAATAATTCTGTCAGTGTCCTACGTTGCTGAATGACCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGATTGTTGGCAAGTATAGAGAGGAATATATGATTTATGTGATGTGTATTTTGAGAAGAATTTAATAAAAGCCAAACAGCTGCGTTCTGGCCCAAAAAAAAAAAAAAAAAA] [+] EMBL AK100153 [CCACCACTCGCCTCACACTCACTCGCTCAGCACTACTTGCACCCCCTAGCTGAGATCAGTAGTAAACGGTCAGTCAATTGTTGCAAAGCGATCAGCTACTGGCGATGGCTCAGGGAAGGGGCAGTGCTGCAGGACGACGCAACGCCGCCGTGCTGGC GATGGT CCTCCTCTGCGTGCTCCTCCACGGCGAGCTCGCCGAGTCGGCCGTGTACACCGTCGGCGACCGCGGCGGCTGGGGCTTCAACT CCGGCGGCTGGCTCAGGGGCAAGCGCTTCCGCGCCGGCGACGTGCTCGTGTTCAAGTACAGCCCGTCGGCGCACAACGTGG TGGC GGTGAACGCGGCGGGGTACAAGTCGTGCAGCGCGCCGAGGGGTGCCAAGGTGTACAAGTCGGGCAGCGACCGCGTCA CCCTGGCGCGCGGCACCAACTACTTCATCTGCAGCTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCGCCGTCACCGCCGCCTGATCGGCCGGCCGGTCGCCGGAGTCCGGCGGGATCGAATGTAGTAGTGGCAATCTCTAAATATCCGGGAAGTAGATCCAATAATTCTGTCAGTGTCCTACGTTGCTGAATGACCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGATTGTTGGCAAGTATAGAGAGGAATATATGATTTATGTGATGTGTATTTTGAGAAGAATTTAATAAAAGCCAAACAGCTGCGTTCTG ] [+] EMBL C27387 [ CGCCTCACACTCACTCGCTCAGCACTACTTGCACCCCCTAGCTGAGATCAGTAGTAAACGGTCAGTCAATTGTTGCAAAGCGATCAG TACTGGCGATGGCTCAGGGAAGGGGCAGTGCTGCAGGACGACGCAACGCCGCCGTGCTGGCAGTNGGT CCTCCTCTGCGTGCTCCTCCACGGCGAGCTCGCAGNTCCGNCGGTGTACACCGTCGGCGACCNCGGCGGCTGGGGCTTCAACT CCGGCGGCTGGCTCAGGGGCAAGCGCTTCCG GCNNGCGACGTGCTCGTGTTCAAGTACAGCCCGTCGGCGCACAACGTGGTTNGCTGGTGAACGCGGCGGGGTACAAGTCGTGCAGCG GCCGAGGGGTGCCAAGGTGTACAAGTNGGGCAGCGAC ] [+] EMBL AA752386 [ cgagCTCACACTCACTCGCTCAGCACTACYTGCACCCCCTAGCTGAGATCAGTAGTAAACGGTCAGTCAATTGTTGCAAAGCGATCAGCTACTGGCGATGGCTCAGGGAAGGGGCAGTGCTGCAGGACGACGCAACGCCGCCGTGCTGGC GATGGT CCTCCTCTGCGTGCTCCTCCACGGCGAGCTCGCCGAGTCGGCCGTGTACACCGTCGGCGACCGCGGCGGCTGGGGCTTCAACTACCGGCGGCTGGCTCAGGGGCAAACGC ] [+] EMBL CA755130 [ TCGCTCAGCACTACTTGCACCCCCTAGCTGAGATCAGTAGTAAACGGTCAGTCAATTGTTGCAAAGCGATCAGCTACTGGCGATGGCTCAGGGAAGGGGCAGTGCTGCAGGACGACGCAACGCCGCCGTGCTGGC GATGGT CCTCCTCTGCGTGCTCCTCCACGGCGAGCTCGCCGAGTCGGCCGTGTACACCGTCGGCGACCGCGGCGGCTGGGGCTTCAACT CCGGCGGCTGGCTCAGGGGCAAGCGCTTCCGCGCCGGCGACGTGCTCGTGTTCAAGTACAGCCCGTCGGCGCACAACGTGG TGGC GGTGAACGCGGCGGGGTACAAGTCGTGCAGCGCGCCGAGGGGTGCCAAGGTGTACAAGTCGGGCAGCGACCGCGTCA CCCTGGCGCGCGGCACCAACTACTTCATCTGCAGCTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCGCCGTCACCGCCGCCTGATCGGCCGGCCGGTCGCCGGAGTCCGGCGGGATCGAATGTAGTAGTGGCAATCTCTAAATATCCGGGAAGTAGATCCAATAATTCTGTCAGTGTCCTACGTTGCTGAATGACCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGATTGTTGGCAAGTATAGAGAGGAATATATGATTTATGTGATGTGTATTTTGAGAAGAATTTAATAAAAGCCAAACAGCTGCGTTCTGGCCCAAAAAAAAAAAAAAAAAA] [+] EMBL BI804898 [ GATGGTCCCTCCTCTGCGTGCTCCTCCAC GCGAGCTC CCGAGTC GCCGTGTACACCGTCGGCGACC C GC GCTGGGGCTTCAACT CC GC GCTGGCTCAGGGGCAAGCGCTTCCGCGCCGGCGACGTGCTCGTGTTCAAGTACAGCCCGTCGGCGCACAACGTGG TGGC GGTGAACGCGGCGGGGTACAAGTCGTGCAGCGCGCCGAGGGGTGCCAAGGTGTACAAGTCGGGCAGCGACCGCGTCACCCCTGGCGCGCGGCACCAACTACTTCATCTGCAGCTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCGCCGTCACCGCCGCCTGATCGGCCGGCCGGTCGCCGGAGTCCGGCGGGATCGAATGTAGTAGTGGCAATCTCTAAATATCCGGGAAGTAGATCCAATAATTCTGTCAGTGTCCTACGTTGCTGAATGACCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGATTGTTGGCAAGTATAGAGAGGAATATATGATTTATGTGATGTGTATTTTGAGAAGAATTTAATAAAAGCC AACAGCTGCGTTCTGGCCCAAAAAAAAAA ] consensusID : consensus_10933#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [NCCCGGAGTCCGGCGGGATCAAATGTAGTAGTGNCAATCTNTAAATATCCGGGAAGTAGATCCNAATAATTCTGTCAGTGTCCTACGTTGCTGAATGACCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGATTGTTGGCAAGTATAGAGAGGAATATATGATTTATGTGATGTGTATTTTGAGAAGAATTTAATAAAAGCCNAACAGCTGCGTTTTGGCCCANCCGTATATATGTAGTACAAGGTTTTNNAAAAAAAAAAAAAA] [+] EMBL AU166879 [NCCCGGAGTCCGGCGGGATCAAATGTAGTAGTGNCAATCTNTAAATATCCGGGAAGTAGATCCNAATAATTCTGTCAGTGTCCTACGTTGCTGAATGACCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGATTGTTGGCAAGTATAGAGAGGAATATATGATTTATGTGATGTGTATTTTGAGAAGAATTTAATAAAAGCCNAACAGCTGCGTTTTGGCCCANCCGTATATATGTAGTACAAGGTTTTNNAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10933#1 CCACCACTCGCCTCACACTCACTCGCTCAGCACTACTTGCACCCCCTAGCTGAGATCAGT 60 consensus_10933#2 ------------------------------------------------------------ consensus_10933#0 --------------------------------GTACAGCAAACACCAACTCAGCTAGCTA 28 consensus_10933#1 AGTAAACGGTCAGTCAATTGTTGCAAAGCGATCAGCTACTGGCGATGGCTCAGGGAAGGG 120 consensus_10933#2 ------------------------------------------------------------ consensus_10933#0 TACTCTACTCATCTTCTCTGCCAGCTGCTACTACACCAACCAGAGCTAATCAAGTAACAA 88 consensus_10933#1 GCAGTGCTGCAGGACGACGCAACGCCGCCGTGCTGGCGATGGTCCTCCTCTGCGTGCTCC 180 consensus_10933#2 ------------------------------------------------------------ consensus_10933#0 TGGCGGGAAGAGGCAGTGCCATGGCGGCGGTTGGTGTGCTGGTGCTCCTCTGCGTGCTCC 148 consensus_10933#1 TCCACGGCGAGCTCGCCGAGTCGGCCGTGTACACCGTCGGCGACCGCGGCGGCTGGGGCT 240 consensus_10933#2 ------------------------------------------------------------ consensus_10933#0 TCCACGGCGAGATGGCCGAGTCGGCGGTGTTCACCGTCGGCGACCGCGGCGGGTGGGGGA 208 consensus_10933#1 TCAACTCCGGCGGCTGGCTCAGGGGCAAGCGCTTCCGCGCCGGCGACGTGCTCGTGTTCA 300 consensus_10933#2 ------------------------------------------------------------ consensus_10933#0 TGGGGGCGGGATCGTGGGCGAACGGGAAGCGGTTCAAGGCCGGCGACGTGCTGGTGTTCA 268 consensus_10933#1 AGTACAGCCCGTCGGCGCACAACGTGGTGGCGGTGAACGCGGCGGGGTACAAGTCGTGCA 360 consensus_10933#2 ------------------------------------------------------------ consensus_10933#0 AGTACGACTCGTCGGCGCACAACGTGGTGGCGGTGAACGCCGCCGGGTACAAGGGCTGCA 328 consensus_10933#1 GCGCG---CCGAGGGGTGCCAAGGTGTACAAGTCGGGCAGCGACCGCGTCACCCTGGCGC 417 consensus_10933#2 ------------------------------------------------------------ consensus_10933#0 CCGCCGCCCCGCGCGGCGCCAAGGTGTACAAGTCCGGCAACGACCGCGTCACCCTCGCCC 388 consensus_10933#1 GCGGCACCAACTACTTCATCTGCAGCTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCG 477 consensus_10933#2 ------------------------------------------------------------ consensus_10933#0 GCGGCACCAACTACTTCATCTGCAACTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCG 448 consensus_10933#1 CCGTCACCGCCGCCTGATCGGCCGGCCGGTCG-CCGGAGTC-----CGGCGGGATCG-AA 530 consensus_10933#2 ------------------------------NC-CCGGAGTC-----CGGCGGGATCA-AA 23 consensus_10933#0 CCGTCACCGCCGCCTAGTTCTTCTTCTTCCTCGTCGTCGTCGTCTCCGTCGCCGGCATGG 508 ** *** ** ** * consensus_10933#1 TGTAGTAGTGGCAATCTCTAAATATCCGGGAAGTAGATCCAA-TAATTCTGTCAGT--GT 587 consensus_10933#2 TGTAGTAGTGNCAATCTNTAAATATCCGGGAAGTAGATCCNAATAATTCTGTCAGT--GT 81 consensus_10933#0 CGCCATGCCGTCCATCTC-AACCAGCTGCTTATTATATCTATATACAAATGTTTGTCGAT 567 * * * * **** ** * * * * ** *** ** *** ** * consensus_10933#1 CCTACGTTGCTGAATGACCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGA 647 consensus_10933#2 CCTACGTTGCTGAATGACCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGA 141 consensus_10933#0 CGTGTGTGTTCTAACCACCATCAGCTGATTTATAATTCTACGAATGAAGAATACGATCCA 627 * * ** ** *** ** * **** *** * * * * consensus_10933#1 TTGTTGGCAAGTATAGAGAGGAATATATGATTTATGTGATGTGTATTTTGAGAAGAATTT 707 consensus_10933#2 TTGTTGGCAAGTATAGAGAGGAATATATGATTTATGTGATGTGTATTTTGAGAAGAATTT 201 consensus_10933#0 ATGCATCTATGCATGCATACACACATG-GATCAATAT-ATA-ATAGTTGTACACTTCTTT 684 ** * * ** * * * ** *** ** * ** ** ** * * *** consensus_10933#1 AATAAAAGCCAAACAGCTGCGTTCTGGCCCAAAAAAAAAAAAAAAAAA------------ 755 consensus_10933#2 AATAAAAGCCNAACAGCTGCGTTTTGGCCCANCCGTATATATGTAGTACAAGGTTTTNNA 261 consensus_10933#0 GAGTGACGGATGTTGTATCCGGTGAAATTTATATACATATAAATATGAATAAAAGCCACA 744 * * * * ** * * * * * * * consensus_10933#1 ------------- consensus_10933#2 AAAAAAAAAAAAA 274 consensus_10933#0 TTATGCAAAAAA- 756 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||