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Oryza sativa
cluster # 10935 cluster # 10935       Sequences # 8       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10935#0 length = 2023 sequences # 6  
 consensus_10935#1 length = 784 sequences # 1  
consensus_10935#2 length = 746 sequences # 1  
consensusID : consensus_10935#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2023
fasta sequence 
                              [GTTGTTCCACTCATCACACCTCTCCCTCCTCCCCTCTCATGGCCGCCGCCTCCGAACCCTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCGCCCCACCCAGATCTGCGCCGGCGACGGCAAGGATGGAAGGCGGCGGGGCTCAGCGCCACCACCGCGGGCGGCGCCGAGGTGCGGCGGGGTCCGCCGCGCGAACGCCCCGGGGCTGGTGCTGCTCCTTCGCTGGCGTCCCGCAGAGCCCCGACCTCCGCCCCTTCCCTCCCTCCCTCGCGCCGCCGGCCACGGCGGCGTCTTCCTCCCCGGCGCCGGGTGGTGGTGCCGGGAGGAATAAGCTGCCGCCCAAGTCCCCCTCGATCTCGTCGTTCCACAGCTCGCCGACGTCGTCGAGGCTCGCCGGCCTCGGCGGCCTCATCGACCCGCGCCGCATCCTCTCCCCCGGCCGCGTCTCGCCCATCGACCTCGATGACTCCGCGCCCCCGCTCCCGCTCCCGCTCCCGCTCCCGCCGCCGCCGGTGACGCCCGCGGCGGAGACGGTGGTGGTCCCGGCGGAGACGTCGGCGGCGGTGGCGCCGTTGGTGGTGGCGTCGGCGGAGGCGGATGCGGCGGGCGACGAGGCGCTGGATCTGAGGCTTTTCCTTCGCGGGAGGGACGGGAGTACGTGCGTGGTGATGGAGCTCGACTCCGGGGTGCTCTGCGACAGCAGCGCCTTCTTCGCCGCCATGGCGCCGCCGCGCGGGCCCGCCGGTGACGGAGGAGGGAGCGGCAGGAGGATCGAGGTGGACGGGGTGGACAATGTGGAGGCGTTCCGCGCCGCCGTCGAGCTCATGTACCAGCCTGATCCGCTGCGGTGGCTCGCCGCCGCTGGCGTGTCGCGCTCCATTGATGTGCTCGAGGTGTCTTCATCAATCATGTTTGAAAGAGGAGTTAAATTGTGTTTGTCATACATAGAAGCAGTTCCATGGAATGAGAACGAGGAGGAGAAGCTCAAGAATCTCTTTGCAAGATGTACTTTTGATGAAGCAATATCCCAAGATGTTCTGGCTAGATTGCGGCCTCACAGCTGGAGCAGCTCAGAAGACCTCACAGTGCATCTTATCCAATCAGTCACGAGCAGCACCAACAGTGGTGCAAGAAAAGATATGCAATCTTTGGTAAATGGCCTTCTAAGCAAAAGTTCTGTCTACCAAAAAGACATGGCAGGGCTAAACAGAGAGAGCCTGTATAATATCTGTTATGCCTGTTTAAATTCACTAGTGGATCTTTATGACGAAGCAACAGAGGCTACAAACCACACTGCTCAAGCATTAGTTATCAAGGGCAGTAAACCATTTATTGAGAGAATCTCTCAGCAGACAGAGAACCTCAACTGGCTCTTGGACATTCTTGTGAATATTGACATGGCTGAAGAGTTTGTGGAGCTGTGGGCAAAGCAAGACAGGCTCATCAGGATACATGAGCAGGCATCACCCATGATGAGGTATGAACTAAGCCGAATATCTGCTAGTGTTTTCATCGCACTCGGCAAAGGAAAAGTTCAGTGCCGTGGAGAGCTGAGGAGCCTCCTCTTCTACGGATGGTTCAGCC-CGATGTTGCTTGATTTCGG-CTGGCTTCAGCGATGCTCCAAAGGTCTGGATGTAAGATCTTTGGAGGAAAATCTAGGACAGGCCCTACTAACCCTCCCACTCAAGCAGCAGCAGTGTCTATTTGAGGAGTGGTTTCAGTGTTTTGCATCCAAAGGATCAGAGTGCCCGAACCTTACTAGAGCTTTCCAGGTATGGTGGAGAAGGTCCTTCGTTAGATCATCGGTAGAAGGTCAGTGATAATGTTTTTACTACTAGTATATGCTGTCTGTACCACTTGTAAAATTGCAATTGTTGGAATAACTAGTAGGGGTGATCAGGTGAATGATGTCTACCGTAGTTTAGCCCTTTCGATTGTATGTGCATAAGCTTGTTAAATTTATTTTGAGGAATGGATGGCTTTGGTGTGTGTATGTTAAAAAAAAAAAAAAAAA]

[+] EMBL AK067947             [GTTGTTCCACTCATCACACCTCTCCCTCCTCCCCTCTCATGGCCGCCGCCTCCGAACCCTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCGCCCCACCCAGATCTGCGCCGGCGACGGCAAGGATGGAAGGCGGCGGGGCTCAGCGCCACCACCGCGGGCGGCGCCGAGGTGCGGCGGGGTCCGCCGCGCGAACGCCCCGGGGCTGGTGCTGCTCCTTCGCTGGCGTCCCGCAGAGCCCCGACCTCCGCCCCTTCCCTCCCTCCCTCGCGCCGCCGGCCACGGCGGCGTCTTCCTCCCCGGCGCCGGGTGGTGGTGCCGGGAGGAATAAGCTGCCGCCCAAGTCCCCCTCGATCTCGTCGTTCCACAGCTCGCCGACGTCGTCGAGGCTCGCCGGCCTCGGCGGCCTCATCGACCCGCGCCGCATCCTCTCCCCCGGCCGCGTCTCGCCCATCGACCTCGATGACTCCGCGCCCCCGCTCCCGCTCCCGCTCCCGCTCCCGCCGCCGCCGGTGACGCCCGCGGCGGAGACGGTGGTGGTCCCGGCGGAGACGTCGGCGGCGGTGGCGCCGTTGGTGGTGGCGTCGGCGGAGGCGGATGCGGCGGGCGACGAGGCGCTGGATCTGAGGCTTTTCCTTCGCGGGAGGGACGGGAGTACGTGCGTGGTGATGGAGCTCGACTCCGGGGTGCTCTGCGACAGCAGCGCCTTCTTCGCCGCCATGGCGCCGCCGCGCGGGCCCGCCGGTGACGGAGGAGGGAGCGGCAGGAGGATCGAGGTGGACGGGGTGGACAATGTGGAGGCGTTCCGCGCCGCCGTCGAGCTCATGTACCAGCCTGATCCGCTGCGGTGGCTCGCCGCCGCTGGCGTGTCGCGCTCCATTGATGTGCTCGAGGTGTCTTCATCAATCATGTTTGAAAGAGGAGTTAAATTGTGTTTGTCATACATAGAAGCAGTTCCATGGAATGAGAACGAGGAGGAGAAGCTCAAGAATCTCTTTGCAAGATGTACTTTTGATGAAGCAATATCCCAAGATGTTCTGGCTAGATTGCGGCCTCACAGCTGGAGCAGCTCAGAAGACCTCACAGTGCATCTTATCCAATCAGTCACGAGCAGCACCAACAGTGGTGCAAGAAAAGATATGCAATCTTTGGTAAATGGCCTTCTAAGCAAAAGTTCTGTCTACCAAAAAGACATGGCAGGGCTAAACAGAGAGAGCCTGTATAATATCTGTTATGCCTGTTTAAATTCACTAGTGGATCTTTATGACGAAGCAACAGAGGCTACAAACCACACTGCTCAAGCATTAGTTATCAAGGGCAGTAAACCATTTATTGAGAGAATCTCTCAGCAGACAGAGAACCTCAACTGGCTCTTGGACATTCTTGTGAATATTGACATGGCTGAAGAGTTTGTGGAGCTGTGGGCAAAGCAAGACAGGCTCATCAGGATACATGAGCAGGCATCACCCATGATGAGGTATGAACTAAGCCGAATATCTGCTAGTGTTTTCATCGCACTCGGCAAAGGAAAAGTTCAGTGCCGTGGAGAGCTGAGGAGCCTCCTCTTCTACGGATGGTTCAGCC CGATGTTGCTTGATTTCGG CTGGCTTCAGCGATGCTCCAAAGGTCTGGATGTAAGATCTTTGGAGGAAAATCTAGGACAGGCCCTACTAACCCTCCCACTCAAGCAGCAGCAGTGTCTATTTGAGGAGTGGTTTCAGTGTTTTGCATCCAAAGGATCAGAGTGCCCGAACCTTACTAGAGCTTTCCAGGTATGGTGGAGAAGGTCCTTCGTTAGATCATCGGTAGAAGGTCAGTGATAATGTTTTTACTACTAGTATATGCTGTCTGTACCACTTGTAAAATTGCAATTGTTGGAATAACTAGTAGGGGTGATCAGGTGAATGATGTCTACCGTAGTTTAGCCCTTTCGATTGTATGTGCATAAGCTTGTTAAATTTATTTTGAGGAATGGATGGCTTTGGTG                           ]
[+] EMBL C26113               [                        CCTCCTCCCCTCTNATGGCCGCCGCCTCCNAACCCTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCGCCCCACCCAGATCTGCGCCGGCNACGG AAGGATGGAAGGCGGCGGGGCTCAGCGCCACCACCGCGGGCGGCGCCGAGGTGCGGCGGGGTCCGCCG GCNAACGCCCCGGGGCTGGTGCTGCTCCTTCGCTGGCGTCCCGCAGAGCCCCGACCTNCGNCCCTTCCCTCCCTCCCTCGCGNCGNCGGCCACGG GGTNCTTTCCTCCCCGGNGACGGGTGGTGGTGCCGGGAGGAATAANCTGCCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB669162             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCAGGGCTAAACAGAGAGAGCCTGTATAATATCTGTTATGCCTGTTTAAATTCACTAGTGGATCTTTATGACGAAGCAACAGAGGCTACAAACCACACTGCTCAAGCATTAGTTATCAAGGGCAGTAAACCATTTATTGAGAGAATCTCTCAGCAGACAGAGAACCTCAACTGGCTCTTGGACATTCTTGTGAATATTGACATGGCTGAAGAGTTTGTGGAGCTGTGGGCAAAGCAAGACAGGCTCATCAGGATACATGAGCAGGCATCACCCATGATGAGGTATGATCTAAGCCGAATATCTGCTAGTGTTTTCATCGCACTTGGCAAAGGAAAAGTTCAGTGCCATGGAGAGCTGAGGAGCCTCCTCTTATTCGGATGGTTCAACCGCGATGTTGCTTGATTTGGGAGTGGATTCAGCGATGCTC                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB669163             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCTGTATAATATCTGTTATGCCTGTTANAATTCACTAGTGGATCTTTATGACGAAGCAACAGAGGCTACAAACCACACTGCTCAAGCATTAGTTATCAAGGGCAGTAAACCATTTATTGAGAGAATCTCTCAGCAGACAGAGAACCTCAACTGGCTCTTGGACATTCTTGTGAATATTGACATGGCTGAAGAGTTTGTGGAGCTGTGGGCAAAGCAAGACAGGCTCATCAGGATACATGAGCAGGCATCACCCATGATGAGGTATGAACTAAGCCGAATATCTGCTAGTGTTTTCATCGCACTCGGCAAAGGAAAAGTTCAGTGCCGTGGAGAGCTGAGGAGCCTCCTCTTCTACGGATGGTTCAGCC CGATGTTGCTTGATTTCGG CTGGCTTCAGCGATGCTCCAAAGGTCTGGATGTAAGATCTTTGGAGGAAAATCTAGGACAGGCCCTACTAACCCTCCCACTCAAGCAGCAGCAGTGTCTATTTGAGGAGTGGTTTCAGTGTTTTGCATCCAAAGGATCAGAGTGCCCGAACCTTACTAGAGCTTTCCAGGTATGGTGGAGAAGGTCCTTCGTTAGATCATCGGTAGAAGGTCAGTGATAATGTTTTTACTACTAGTATATGCTGTCTGTACCACTTGTAAAATTGCAATTGTTGGAATAACTAGTAGGGGTGATCAGGTGAATGATGTCTACCGTAGTTTAGCCCTTTCGATTGTATGTGCATAAGCTTGTTAAATTTATTTTGAGGAATGGATGGCTTTGGTGT                          ]
[-] EMBL CA763045             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 aggggGAACCTCAACTGGCTCTTGGACATTCTTGTGAATATTGACATGGCTGAAGAGTTTGTGGAGCTGTGGGCAAAGCAAGACAGGCTCATCAGGATACATGAGCAGGCATCACCCATGATGAGGTATGAACTAAGCCGAATATCTGCTAGTGTTTTCATCGCACTCGGCAAAGGAAAAGTTCAGTGCCGTGGAGAGCTGAGGAGCCTCCTCTTCTACGGATGGTTCAGCC CGATGTTGCTTGATTTCGG CTGGCTTCAGCGATGCTCCAAAGGTCTGGATGTAAGATCTTTGGAGGAAAATCTAGGACAGGCCCTACTAACCCTCCCACTCAAGCAGCAGCAGTGTCTATTTGAGGAGTGGTTTCAGTGTTTTGCATCCAAAGGATCGGAGTGCCCGAACCTTACTAGAGCTTTCCAGGTATGGTGGAGAAGGTCCTTCGTTAGATCATCAGTAGAAGGTCAGTGATAATGTTTTTACTACTAGTATATGCTGTCTGTACCCCTTGTAAAATTGCAATTGTTGGAATAACTAGTAGGGGTGATCAGGTGAATGATGTCTACCGTAGTTTAGCCCTTTCGATTGTATGTGCATAAGCTTGTTAAATTTATTTTGAGGAATGGATGGCTTTGGTGTGTGTATGTTAAAAAAAAAAAAAAAAA]
[+] EMBL AU166359             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTCTACGGATGGTTCAGCC CGATGTTGCTTGATTTCGG CTGGCTTCAGCGATGCTCCAAAGGTCTGGATGTAAGATCTTTGGAGGAAAATCTAGGACAGGCCCTACTAACCCTCCCACTCAAGCAGCAGCAGTGTCTATTTGAGGAGTGGTTTCAGTGTTTTGCATCCAAAGGATCAGAGTGCCCGAACCTTACTAGAGCTTTCCAGGTATGGTGGAGAAGGTCCTTCGTTAGATCATCGGTAGAAGGTCAGTGATAATGTTTTTACTACTAGTATATGCTGTCTGTACCACTTGTAAAATTGCAATTGTTGGAATAACTAGTAGGGGTGATCAGGTGAATGATGTCTACCGTAGTTTAGCCCTTTCGATTGTATGTGCATAAGCTTGTTAAATTTATTTTGAGGAATGGATGGCTTTGGTGTGTGTATGTTAAAAA            ]




>consensus_10935#0
GTTGTTCCACTCATCACACCTCTCCCTCCTCCCCTCTCATGGCCGCCGCCTCCGAACCCT
AGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCGCCCCACCCAGATCTGCGC
CGGCGACGGCAAGGATGGAAGGCGGCGGGGCTCAGCGCCACCACCGCGGGCGGCGCCGAG
GTGCGGCGGGGTCCGCCGCGCGAACGCCCCGGGGCTGGTGCTGCTCCTTCGCTGGCGTCC
CGCAGAGCCCCGACCTCCGCCCCTTCCCTCCCTCCCTCGCGCCGCCGGCCACGGCGGCGT
CTTCCTCCCCGGCGCCGGGTGGTGGTGCCGGGAGGAATAAGCTGCCGCCCAAGTCCCCCT
CGATCTCGTCGTTCCACAGCTCGCCGACGTCGTCGAGGCTCGCCGGCCTCGGCGGCCTCA
TCGACCCGCGCCGCATCCTCTCCCCCGGCCGCGTCTCGCCCATCGACCTCGATGACTCCG
CGCCCCCGCTCCCGCTCCCGCTCCCGCTCCCGCCGCCGCCGGTGACGCCCGCGGCGGAGA
CGGTGGTGGTCCCGGCGGAGACGTCGGCGGCGGTGGCGCCGTTGGTGGTGGCGTCGGCGG
AGGCGGATGCGGCGGGCGACGAGGCGCTGGATCTGAGGCTTTTCCTTCGCGGGAGGGACG
GGAGTACGTGCGTGGTGATGGAGCTCGACTCCGGGGTGCTCTGCGACAGCAGCGCCTTCT
TCGCCGCCATGGCGCCGCCGCGCGGGCCCGCCGGTGACGGAGGAGGGAGCGGCAGGAGGA
TCGAGGTGGACGGGGTGGACAATGTGGAGGCGTTCCGCGCCGCCGTCGAGCTCATGTACC
AGCCTGATCCGCTGCGGTGGCTCGCCGCCGCTGGCGTGTCGCGCTCCATTGATGTGCTCG
AGGTGTCTTCATCAATCATGTTTGAAAGAGGAGTTAAATTGTGTTTGTCATACATAGAAG
CAGTTCCATGGAATGAGAACGAGGAGGAGAAGCTCAAGAATCTCTTTGCAAGATGTACTT
TTGATGAAGCAATATCCCAAGATGTTCTGGCTAGATTGCGGCCTCACAGCTGGAGCAGCT
CAGAAGACCTCACAGTGCATCTTATCCAATCAGTCACGAGCAGCACCAACAGTGGTGCAA
GAAAAGATATGCAATCTTTGGTAAATGGCCTTCTAAGCAAAAGTTCTGTCTACCAAAAAG
ACATGGCAGGGCTAAACAGAGAGAGCCTGTATAATATCTGTTATGCCTGTTTAAATTCAC
TAGTGGATCTTTATGACGAAGCAACAGAGGCTACAAACCACACTGCTCAAGCATTAGTTA
TCAAGGGCAGTAAACCATTTATTGAGAGAATCTCTCAGCAGACAGAGAACCTCAACTGGC
TCTTGGACATTCTTGTGAATATTGACATGGCTGAAGAGTTTGTGGAGCTGTGGGCAAAGC
AAGACAGGCTCATCAGGATACATGAGCAGGCATCACCCATGATGAGGTATGAACTAAGCC
GAATATCTGCTAGTGTTTTCATCGCACTCGGCAAAGGAAAAGTTCAGTGCCGTGGAGAGC
TGAGGAGCCTCCTCTTCTACGGATGGTTCAGCCCGATGTTGCTTGATTTCGGCTGGCTTC
AGCGATGCTCCAAAGGTCTGGATGTAAGATCTTTGGAGGAAAATCTAGGACAGGCCCTAC
TAACCCTCCCACTCAAGCAGCAGCAGTGTCTATTTGAGGAGTGGTTTCAGTGTTTTGCAT
CCAAAGGATCAGAGTGCCCGAACCTTACTAGAGCTTTCCAGGTATGGTGGAGAAGGTCCT
TCGTTAGATCATCGGTAGAAGGTCAGTGATAATGTTTTTACTACTAGTATATGCTGTCTG
TACCACTTGTAAAATTGCAATTGTTGGAATAACTAGTAGGGGTGATCAGGTGAATGATGT
CTACCGTAGTTTAGCCCTTTCGATTGTATGTGCATAAGCTTGTTAAATTTATTTTGAGGA
ATGGATGGCTTTGGTGTGTGTATGTTAAAAAAAAAAAAAAAAA

consensusID : consensus_10935#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 784
fasta sequence 
                              [AGTCCCTTGGTCGATGGGCGAGACGCGGCCGGGGGAGAGGATGCGGCGCGGGTCGATGAGGCCGCCGAGGCCGGCGAGCCTCGACGACGTCGGCGAGCTGTGGAACGACGAGATCGAGGGGGACTTGGGCGGCAGCTTATTCCTCCCGGCACCACCACCCGGCGCCGGGGAGGAAAAGCCTCAGATCCAGCGCCTCGTCGCCCGCCGCTCCCGCTCCCGCTCCCGCTCCCGCCGCCGCCGGTGACGCCATGGCGCCGCCGCGCGGGCCCGCCGGTGACGGAGGAGGGAGCGGCAGGAGGATCGAGGTGGACGGGGTGGACAATGTGGAGGCGTTCCGCGCCGCCGTCGAGCTCATGTACCAGCCTGATCCGCTGCGGTGGCTCGCCGCCGCTGGCGTGTCGCGCTCCATTGATGTGCTCGAGGTGTCTTCATCAATCATGTTTGAAAGAGGAGTTAAATTGTGTTTGTCATACATAGAAGCAGTTCCATGGAATGAGAACGAGGAGGAGAAGCTCAAGAATCTCTTTGCAAGATGTACTTTTGATGAAGCAATATCCCAAGATGTTCTGGCTAGATTGCGGCCTCACAGCTGGAGCAGCTCAGAAGACCTCACAGTGCATCTTATCCAATCAGTCACGAGCAGCACCAACAGTGGTGCAAGAAAAGATATGCAATCTTTGGTAAATGGCCTTCTAAGCAAAAGTTCTGTCTACCAAAAAGACATGGCAGGGCTAAACAGAGAGAGCCTGTATAATATCTGGTATGCCTGTTTAATTCACTAGTG]

[+] EMBL CB647152             [AGTCCCTTGGTCGATGGGCGAGACGCGGCCGGGGGAGAGGATGCGGCGCGGGTCGATGAGGCCGCCGAGGCCGGCGAGCCTCGACGACGTCGGCGAGCTGTGGAACGACGAGATCGAGGGGGACTTGGGCGGCAGCTTATTCCTCCCGGCACCACCACCCGGCGCCGGGGAGGAAAAGCCTCAGATCCAGCGCCTCGTCGCCCGCCGCTCCCGCTCCCGCTCCCGCTCCCGCCGCCGCCGGTGACGCCATGGCGCCGCCGCGCGGGCCCGCCGGTGACGGAGGAGGGAGCGGCAGGAGGATCGAGGTGGACGGGGTGGACAATGTGGAGGCGTTCCGCGCCGCCGTCGAGCTCATGTACCAGCCTGATCCGCTGCGGTGGCTCGCCGCCGCTGGCGTGTCGCGCTCCATTGATGTGCTCGAGGTGTCTTCATCAATCATGTTTGAAAGAGGAGTTAAATTGTGTTTGTCATACATAGAAGCAGTTCCATGGAATGAGAACGAGGAGGAGAAGCTCAAGAATCTCTTTGCAAGATGTACTTTTGATGAAGCAATATCCCAAGATGTTCTGGCTAGATTGCGGCCTCACAGCTGGAGCAGCTCAGAAGACCTCACAGTGCATCTTATCCAATCAGTCACGAGCAGCACCAACAGTGGTGCAAGAAAAGATATGCAATCTTTGGTAAATGGCCTTCTAAGCAAAAGTTCTGTCTACCAAAAAGACATGGCAGGGCTAAACAGAGAGAGCCTGTATAATATCTGGTATGCCTGTTTAATTCACTAGTG]




>consensus_10935#1
AGTCCCTTGGTCGATGGGCGAGACGCGGCCGGGGGAGAGGATGCGGCGCGGGTCGATGAG
GCCGCCGAGGCCGGCGAGCCTCGACGACGTCGGCGAGCTGTGGAACGACGAGATCGAGGG
GGACTTGGGCGGCAGCTTATTCCTCCCGGCACCACCACCCGGCGCCGGGGAGGAAAAGCC
TCAGATCCAGCGCCTCGTCGCCCGCCGCTCCCGCTCCCGCTCCCGCTCCCGCCGCCGCCG
GTGACGCCATGGCGCCGCCGCGCGGGCCCGCCGGTGACGGAGGAGGGAGCGGCAGGAGGA
TCGAGGTGGACGGGGTGGACAATGTGGAGGCGTTCCGCGCCGCCGTCGAGCTCATGTACC
AGCCTGATCCGCTGCGGTGGCTCGCCGCCGCTGGCGTGTCGCGCTCCATTGATGTGCTCG
AGGTGTCTTCATCAATCATGTTTGAAAGAGGAGTTAAATTGTGTTTGTCATACATAGAAG
CAGTTCCATGGAATGAGAACGAGGAGGAGAAGCTCAAGAATCTCTTTGCAAGATGTACTT
TTGATGAAGCAATATCCCAAGATGTTCTGGCTAGATTGCGGCCTCACAGCTGGAGCAGCT
CAGAAGACCTCACAGTGCATCTTATCCAATCAGTCACGAGCAGCACCAACAGTGGTGCAA
GAAAAGATATGCAATCTTTGGTAAATGGCCTTCTAAGCAAAAGTTCTGTCTACCAAAAAG
ACATGGCAGGGCTAAACAGAGAGAGCCTGTATAATATCTGGTATGCCTGTTTAATTCACT
AGTG

consensusID : consensus_10935#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 746
fasta sequence 
                              [ATTTATTGAGAGAATCTCTCAGCAGACAGAGAACCTCAACTGGCTCTTGGACATTCTTGTGAATATTGACATGGCTGAAGAGTTTGTGGAGCTGTGGGCAAAGCAAGACAGGCTCATCAGGATACATGAGCAGGCATCACCCATGATGAGGTATGAACTAAGCCGAATATCTGCTAGTGTTTTCATCGCACTCGGCAAAGGAAAAGTTCAGTGCCGTGGAGAGGTGAGGAGCCTCCTCTTTTACGGATGGTTCAGCCCGATGTTGCTTGATTTCGGCTGGCTTCAGCGATGCTCCAAAGGTCTGGATGTAAGATCTTTGGAGGAAAATATAGGACAGGCCCTATTAACCCTCCCACTCAAGCAGCAGCAGTGTCTATTTGAGGAGTGGTTTCAGTGTTTTGCATCCAAAGGATCAGAGTGCCCGAACCTTACTAGAGCTTTCCAGGTATGGTGGAGAAGGTCCTTCGTTAGATCATCGGTAGAAGGTCAGTGATAATGTTTTTACTAATAGTATATGCTGTCTGTACCACTTGTAAAATTGCAATTGTTGGAATAACTAGTAGGGGTGATCAGGTGAATGATGTCTACCGTAGTTTAGCCCTTTCGATTGTATGTGCATAAGCTTGTTAAATTTATTTTGAGGAATGGATGGCTTTGGTGTGTGTATGTTAAGTTTGAGCCTTCTTGATTCATTACAGTTAACCTTGTGACATCAAAGTAAGAAAAAAACAAAGCTAGTGTGGTTA]

[-] EMBL CB647153             [ATTTATTGAGAGAATCTCTCAGCAGACAGAGAACCTCAACTGGCTCTTGGACATTCTTGTGAATATTGACATGGCTGAAGAGTTTGTGGAGCTGTGGGCAAAGCAAGACAGGCTCATCAGGATACATGAGCAGGCATCACCCATGATGAGGTATGAACTAAGCCGAATATCTGCTAGTGTTTTCATCGCACTCGGCAAAGGAAAAGTTCAGTGCCGTGGAGAGGTGAGGAGCCTCCTCTTTTACGGATGGTTCAGCCCGATGTTGCTTGATTTCGGCTGGCTTCAGCGATGCTCCAAAGGTCTGGATGTAAGATCTTTGGAGGAAAATATAGGACAGGCCCTATTAACCCTCCCACTCAAGCAGCAGCAGTGTCTATTTGAGGAGTGGTTTCAGTGTTTTGCATCCAAAGGATCAGAGTGCCCGAACCTTACTAGAGCTTTCCAGGTATGGTGGAGAAGGTCCTTCGTTAGATCATCGGTAGAAGGTCAGTGATAATGTTTTTACTAATAGTATATGCTGTCTGTACCACTTGTAAAATTGCAATTGTTGGAATAACTAGTAGGGGTGATCAGGTGAATGATGTCTACCGTAGTTTAGCCCTTTCGATTGTATGTGCATAAGCTTGTTAAATTTATTTTGAGGAATGGATGGCTTTGGTGTGTGTATGTTAAGTTTGAGCCTTCTTGATTCATTACAGTTAACCTTGTGACATCAAAGTAAGAAAAAAACAAAGCTAGTGTGGTTA]




>consensus_10935#2
ATTTATTGAGAGAATCTCTCAGCAGACAGAGAACCTCAACTGGCTCTTGGACATTCTTGT
GAATATTGACATGGCTGAAGAGTTTGTGGAGCTGTGGGCAAAGCAAGACAGGCTCATCAG
GATACATGAGCAGGCATCACCCATGATGAGGTATGAACTAAGCCGAATATCTGCTAGTGT
TTTCATCGCACTCGGCAAAGGAAAAGTTCAGTGCCGTGGAGAGGTGAGGAGCCTCCTCTT
TTACGGATGGTTCAGCCCGATGTTGCTTGATTTCGGCTGGCTTCAGCGATGCTCCAAAGG
TCTGGATGTAAGATCTTTGGAGGAAAATATAGGACAGGCCCTATTAACCCTCCCACTCAA
GCAGCAGCAGTGTCTATTTGAGGAGTGGTTTCAGTGTTTTGCATCCAAAGGATCAGAGTG
CCCGAACCTTACTAGAGCTTTCCAGGTATGGTGGAGAAGGTCCTTCGTTAGATCATCGGT
AGAAGGTCAGTGATAATGTTTTTACTAATAGTATATGCTGTCTGTACCACTTGTAAAATT
GCAATTGTTGGAATAACTAGTAGGGGTGATCAGGTGAATGATGTCTACCGTAGTTTAGCC
CTTTCGATTGTATGTGCATAAGCTTGTTAAATTTATTTTGAGGAATGGATGGCTTTGGTG
TGTGTATGTTAAGTTTGAGCCTTCTTGATTCATTACAGTTAACCTTGTGACATCAAAGTA
AGAAAAAAACAAAGCTAGTGTGGTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10935#0      GTTGTTCCACTCATCACACCTCTCCCTCCTCCCCTCTCATGGCCGCCGCCTCCGAACCCT 60
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      AGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCGCCCCACCCAGATCTGCGC 120
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      CGGCGACGGCAAGGATGGAAGGCGGCGGGGCTCAGCGCCACCACCGCGGGCGGCGCCGAG 180
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      GTGCGGCGGGGTCCGCCGCGCGAACGCCCCGGGGCTGGTGCTGCTCCTTCGCTGGCGTCC 240
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      CGCAGAGCCCCGACCTCCGCCCCTTCCCTCCCTCCCTCGCGCCGCCGGCCACGGCGGCGT 300
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      CTTCCTCCCCGGCGCCGGGTGGTGGTGCCGGGAGGAATAAGCTGCCGCCCAAGTCCCCCT 360
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      CGATCTCGTCGTTCCACAGCTCGCCGACGTCGTCGAGGCTCGCCGGCCTCGGCGGCCTCA 420
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      TCGACCCGCGCCGCATCCTCTCCCCCGGCCGCGTCTCGCCCATCGACCTCGATGACTCCG 480
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      CGCCCCCGCTCCCGCTCCCGCTCCCGCTCCCGCCGCCGCCGGTGACGCCCGCGGCGGAGA 540
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      CGGTGGTGGTCCCGGCGGAGACGTCGGCGGCGGTGGCGCCGTTGGTGGTGGCGTCGGCGG 600
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      AGGCGGATGCGGCGGGCGACGAGGCGCTGGATCTGAGGCTTTTCCTTCGCGGGAGGGACG 660
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      GGAGTACGTGCGTGGTGATGGAGCTCGACTCCGGGGTGCTCTGCGACAGCAGCGCCTTCT 720
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      TCGCCGCCATGGCGCCGCCGCGCGGGCCCGCCGGTGACGGAGGAGGGAGCGGCAGGAGGA 780
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      TCGAGGTGGACGGGGTGGACAATGTGGAGGCGTTCCGCGCCGCCGTCGAGCTCATGTACC 840
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      AGCCTGATCCGCTGCGGTGGCTCGCCGCCGCTGGCGTGTCGCGCTCCATTGATGTGCTCG 900
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      AGGTGTCTTCATCAATCATGTTTGAAAGAGGAGTTAAATTGTGTTTGTCATACATAGAAG 960
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      CAGTTCCATGGAATGAGAACGAGGAGGAGAAGCTCAAGAATCTCTTTGCAAGATGTACTT 1020
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      TTGATGAAGCAATATCCCAAGATGTTCTGGCTAGATTGCGGCCTCACAGCTGGAGCAGCT 1080
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      CAGAAGACCTCACAGTGCATCTTATCCAATCAGTCACGAGCAGCACCAACAGTGGTGCAA 1140
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      GAAAAGATATGCAATCTTTGGTAAATGGCCTTCTAAGCAAAAGTTCTGTCTACCAAAAAG 1200
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      ACATGGCAGGGCTAAACAGAGAGAGCCTGTATAATATCTGTTATGCCTGTTTAAATTCAC 1260
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      TAGTGGATCTTTATGACGAAGCAACAGAGGCTACAAACCACACTGCTCAAGCATTAGTTA 1320
consensus_10935#2      ------------------------------------------------------------
consensus_10935#1      ------------------------------------------------------------
                                                                                   

consensus_10935#0      TCAAGGGCAGTAAACCATTTATTGAGAGAATCTCTCAGCAGACAGA-GAACCTCAACTGG 1379
consensus_10935#2      ----------------ATTTATTGAGAGAATCTCTCAGCAGACAGA-GAACCTCAACTGG 43
consensus_10935#1      ----------------------------AGTCCCTTGGTCGATGGGCGAGACGCGGCCGG 32
                                                   * ** **  *  **  *  **  * *  * **

consensus_10935#0      CTCTTGGACATTCTTGTGAATATTGACATGGCTGAAGAGTTTGTGGAGCTGTGGGCAAAG 1439
consensus_10935#2      CTCTTGGACATTCTTGTGAATATTGACATGGCTGAAGAGTTTGTGGAGCTGTGGGCAAAG 103
consensus_10935#1      G----GGAGA-------GGATGCGGCGCGGGTCGATGAGGCCGCCGAG--GCCGGCGAGC 79
                            *** *       * **   *    **  ** ***   *  ***  *  *** *  

consensus_10935#0      CAAGACAGGCTCATCAGGATACATGAGCAGGCATCACCCATGATGAGGTATGAACTAAGC 1499
consensus_10935#2      CAAGACAGGCTCATCAGGATACATGAGCAGGCATCACCCATGATGAGGTATGAACTAAGC 163
consensus_10935#1      CTCGACGACGTCGGCGAGCT--GTGGAACGACGAGATCGAGG--GGGACTTGGGCGGCAG 135
                       *  ***    **  *  * *   **    * *   * * * *  * *   **  *     

consensus_10935#0      CGAATATCTGCTAGTGTTTTCATCGCACTCGGCAAAGGAAAAGT-TCAGTGCCGTGGAGA 1558
consensus_10935#2      CGAATATCTGCTAGTGTTTTCATCGCACTCGGCAAAGGAAAAGT-TCAGTGCCGTGGAGA 222
consensus_10935#1      CTTATTCCTCCCGGCACCACCACCCGGCGCCGGGGAGGAAAAGCCTCAGATCCAGCGCCT 195
                       *  **  ** *  *      ** *   * * *   ********  ****  **   *   

consensus_10935#0      GCTGA---GGAGCCTCCTCTTCTACGGATGGTTCAGCC-----CGATGTTGCT-TGATTT 1609
consensus_10935#2      GGTGA---GGAGCCTCCTCTTTTACGGATGGTTCAGCC-----CGATGTTGCT-TGATTT 273
consensus_10935#1      CGTCGCCCGCCGCTCCCGCTCCCGCTCCCGCTCCCGCCGCCGCCGGTGACGCCATGGCGC 255
                         *     *  **  ** **    *    * * * ***     ** **  **  **    

consensus_10935#0      CGGC---TGGCTTCAGCGATGCTCCA--AAGGTCTGGATGTAAGATC--------TTTGG 1656
consensus_10935#2      CGGC---TGGCTTCAGCGATGCTCCA--AAGGTCTGGATGTAAGATC--------TTTGG 320
consensus_10935#1      CGCCGCGCGGGCCCGCCGGTGACGGAGGAGGGAGCGGCAGGAGGATCGAGGTGGACGGGG 315
                       ** *    **   *  ** **    *  * **   **  * * ****           **

consensus_10935#0      AGGAAAATCTAGGACAGGCCCTACTAACCCTCCCACTCAAGCAGCAGCAGTGTCTATT-T 1715
consensus_10935#2      AGGAAAATATAGGACAGGCCCTATTAACCCTCCCACTCAAGCAGCAGCAGTGTCTATT-T 379
consensus_10935#1      TGGACAATGTGGAGGCGTTCCGCGCCGCCGTCGAGCTCATGTACCAGCCTGATCCGCTGC 375
                        *** *** * *    *  **      ** **   **** * * ****    **   *  

consensus_10935#0      GAGGAGTGGTTTCAGTGTTTTGCATC-CAAAGGATCAGAGTGCCCGAACCTTACTAGAGC 1774
consensus_10935#2      GAGGAGTGGTTTCAGTGTTTTGCATC-CAAAGGATCAGAGTGCCCGAACCTTACTAGAGC 438
consensus_10935#1      GGTGGCTCGCCGCCGC-TGGCGTGTCGCGCTCCATTGATGTGCTCGAGGTGTCTTC--AT 432
                       *  *  * *   * *  *   *  ** *     **    **** ***    *  *     

consensus_10935#0      TTTCCAGGTATGGTGGAGAAGGTCCTTCGT-TAGATCATCGGTAGAAGGTCAGTGATAAT 1833
consensus_10935#2      TTTCCAGGTATGGTGGAGAAGGTCCTTCGT-TAGATCATCGGTAGAAGGTCAGTGATAAT 497
consensus_10935#1      CAATCATGTTTGAAAGAGGAGTTAAATTGTGTTTGTCATACATAGAAGCAGTTCCATGGA 492
                           ** ** **   *** ** *   * ** *   ****   ******       **   

consensus_10935#0      GTTTTTACTACTAGTATATGCTGTCTGTACCACTTGTAAAAT-TGCAATTGTTGGAATAA 1892
consensus_10935#2      GTTTTTACTAATAGTATATGCTGTCTGTACCACTTGTAAAAT-TGCAATTGTTGGAATAA 556
consensus_10935#1      ATGAGAACGAGGAGGAGAAGCTCAAGAATCTCTTTGCAAGATGTACTTTTGATGAAGCAA 552
                        *    ** *  ** * * ***       *   *** ** ** * *  *** ** *  **

consensus_10935#0      CTAGTAGGGGTGATCAGGT--GAATGATGTCTACCG--TAGTTTAGCCCTTTCGATTGTA 1948
consensus_10935#2      CTAGTAGGGGTGATCAGGT--GAATGATGTCTACCG--TAGTTTAGCCCTTTCGATTGTA 612
consensus_10935#1      TATCCCAAGATGTTCTGGCTAGATTGCGGCCTCACAGCTGGAGCAGCTCAGAAGACCTCA 612
                               * ** ** **   ** **  * **  *   * *   *** *    **    *

consensus_10935#0      T-GTGCATAAGCTTGTTAAATTTATTTTGAGGAATG-----GATGGCTTTGGTGTGTGTA 2002
consensus_10935#2      T-GTGCATAAGCTTGTTAAATTTATTTTGAGGAATG-----GATGGCTTTGGTGTGTGTA 666
consensus_10935#1      CAGTGCAT---CTTATCCAATCAGTCACGAGCAGCACCAACAGTGGTGCAAGAAAAGATA 669
                         ******   *** *  ***   *   *** *          ***     *      **

consensus_10935#0      TGTTAAAAAAAA------AAAAAAAAA--------------------------------- 2023
consensus_10935#2      TGTTAAGTTTGA------GCCTTCTTGATTCA--TTACAGTTAACCTTGTGACATCAAAG 718
consensus_10935#1      TGCAATCTTTGGTAAATGGCCTTCTAAGCAAAAGTTCTGTCTACCAAAAAGACATGGCAG 729
                       **  *                                                       

consensus_10935#0      -------------------------------------------------------
consensus_10935#2      TAAGAAAAAAACAAAGCTAGTGTGGTTA--------------------------- 746
consensus_10935#1      GGCTAAACAGAGAGAGCCTGTATAATATCTGGTATGCCTGTTTAATTCACTAGTG 784


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)