cluster # 1094

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Oryza sativa
cluster # 1094 cluster # 1094 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1094#0 length = 1189 sequences # 1

consensus_1094#1 length = 394 sequences # 1

consensusID : consensus_1094#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1189
fasta sequence

                              [GATCGACCGGTGTTCGATCTTTCTTGCTGTGGGGATTTCGCCATGAACGCCTTCTTCACGTCGCTGGCGAGAGGGCTGGACGACCTGAGCAGCGGCGGCGGGCTGTCGTCGCTGCCGGCGCTGCTGCGGGCGGCGGCGCTGCTCAGGGGGCTGCACTCGCAGCTCACGCTGCTGGTGGGGCAGCTCCACCTGCCGCCCGGTGGGCGGTGGCTCGACGAGTACATGGACGAGACCGCGCGGCTCTGGGAGGCTTGCCTCGCCGTCAAGGTCGGCCTTGCCGCCGTCGAGCGGTATTGCGCTGCCGCGTCTTGTGCTGCGGCCGCCATGGATGACTGGCTCCAGGACCCTTCCCCTCTCTCCACTCGCCAGGTGATGAGGGCGATCTCTGCGTCGAGGAGGGAGGCCATGGCGGCGGAGGAGGAGAACCGTGCGCTGTCGGAGGCGAGGATCGCGCCGCTGTCGCTGCAGCTCGACGAGCGGCTGCTGCTGCGCGCCGCGGACGCCAGGTTGAGCGGCTTCAACGGCTTCCGCGGCCTGCTCTACGCGCTGCACAACGCCAGCTCGCTGCTGCTCCTCGTCCTCGCCTCCGGCGCCGTCTCCTGCGCCGCCGCCGCAGCGGGGCCGTGCTCCGCGGATGGCGCCGCGGACGCCGGCGGGTTCGTGGCGTCCATCGCGATGCTGCAGCAGAGGATGGCGGAGGAGGCCGACGCCGACGGTAGCGCCGGCGCGGCGCGGGGGGGCATCCGGATGTACGAGTTCCGGTGCGCGCGCGCCGCCGTGGAGGCGGCGCACGAGGAGGTGGAGCGCGCCGTGGCGGCGGGCCCCCGCAAGCAGCAGTGCGAGGACGGCGACGGCGGCGTCAAGGACAAGGTCGACGAGCTCAAGGCGCGGCTCGACGTGCTCCGGACCGGCACCGACGGCCTCGTCTGCCAGCTCGACGACTTCCTCGACGACATTGTCGAGGGCAGGAAGGAGCTCTCCGACCTTTGCAGCCACTGATCGATCGACTGCAACACCATCATCATCGCCATGGATGATGGCATGAAATGCTTCATGCTTCGCGTGGTAGAGTACTCGTACTGTACGTAGTAGTAGCAAGCATAATCTTCAGTAGCGAGTACGAGTAGTAGTTAGTGGTACTCGATGAGACAGAGTGTGTCGCTGTCACAGCATTTTGCTCATGATGTTG]

[+] EMBL AK058560             [GATCGACCGGTGTTCGATCTTTCTTGCTGTGGGGATTTCGCCATGAACGCCTTCTTCACGTCGCTGGCGAGAGGGCTGGACGACCTGAGCAGCGGCGGCGGGCTGTCGTCGCTGCCGGCGCTGCTGCGGGCGGCGGCGCTGCTCAGGGGGCTGCACTCGCAGCTCACGCTGCTGGTGGGGCAGCTCCACCTGCCGCCCGGTGGGCGGTGGCTCGACGAGTACATGGACGAGACCGCGCGGCTCTGGGAGGCTTGCCTCGCCGTCAAGGTCGGCCTTGCCGCCGTCGAGCGGTATTGCGCTGCCGCGTCTTGTGCTGCGGCCGCCATGGATGACTGGCTCCAGGACCCTTCCCCTCTCTCCACTCGCCAGGTGATGAGGGCGATCTCTGCGTCGAGGAGGGAGGCCATGGCGGCGGAGGAGGAGAACCGTGCGCTGTCGGAGGCGAGGATCGCGCCGCTGTCGCTGCAGCTCGACGAGCGGCTGCTGCTGCGCGCCGCGGACGCCAGGTTGAGCGGCTTCAACGGCTTCCGCGGCCTGCTCTACGCGCTGCACAACGCCAGCTCGCTGCTGCTCCTCGTCCTCGCCTCCGGCGCCGTCTCCTGCGCCGCCGCCGCAGCGGGGCCGTGCTCCGCGGATGGCGCCGCGGACGCCGGCGGGTTCGTGGCGTCCATCGCGATGCTGCAGCAGAGGATGGCGGAGGAGGCCGACGCCGACGGTAGCGCCGGCGCGGCGCGGGGGGGCATCCGGATGTACGAGTTCCGGTGCGCGCGCGCCGCCGTGGAGGCGGCGCACGAGGAGGTGGAGCGCGCCGTGGCGGCGGGCCCCCGCAAGCAGCAGTGCGAGGACGGCGACGGCGGCGTCAAGGACAAGGTCGACGAGCTCAAGGCGCGGCTCGACGTGCTCCGGACCGGCACCGACGGCCTCGTCTGCCAGCTCGACGACTTCCTCGACGACATTGTCGAGGGCAGGAAGGAGCTCTCCGACCTTTGCAGCCACTGATCGATCGACTGCAACACCATCATCATCGCCATGGATGATGGCATGAAATGCTTCATGCTTCGCGTGGTAGAGTACTCGTACTGTACGTAGTAGTAGCAAGCATAATCTTCAGTAGCGAGTACGAGTAGTAGTTAGTGGTACTCGATGAGACAGAGTGTGTCGCTGTCACAGCATTTTGCTCATGATGTTG]




>consensus_1094#0
GATCGACCGGTGTTCGATCTTTCTTGCTGTGGGGATTTCGCCATGAACGCCTTCTTCACG
TCGCTGGCGAGAGGGCTGGACGACCTGAGCAGCGGCGGCGGGCTGTCGTCGCTGCCGGCG
CTGCTGCGGGCGGCGGCGCTGCTCAGGGGGCTGCACTCGCAGCTCACGCTGCTGGTGGGG
CAGCTCCACCTGCCGCCCGGTGGGCGGTGGCTCGACGAGTACATGGACGAGACCGCGCGG
CTCTGGGAGGCTTGCCTCGCCGTCAAGGTCGGCCTTGCCGCCGTCGAGCGGTATTGCGCT
GCCGCGTCTTGTGCTGCGGCCGCCATGGATGACTGGCTCCAGGACCCTTCCCCTCTCTCC
ACTCGCCAGGTGATGAGGGCGATCTCTGCGTCGAGGAGGGAGGCCATGGCGGCGGAGGAG
GAGAACCGTGCGCTGTCGGAGGCGAGGATCGCGCCGCTGTCGCTGCAGCTCGACGAGCGG
CTGCTGCTGCGCGCCGCGGACGCCAGGTTGAGCGGCTTCAACGGCTTCCGCGGCCTGCTC
TACGCGCTGCACAACGCCAGCTCGCTGCTGCTCCTCGTCCTCGCCTCCGGCGCCGTCTCC
TGCGCCGCCGCCGCAGCGGGGCCGTGCTCCGCGGATGGCGCCGCGGACGCCGGCGGGTTC
GTGGCGTCCATCGCGATGCTGCAGCAGAGGATGGCGGAGGAGGCCGACGCCGACGGTAGC
GCCGGCGCGGCGCGGGGGGGCATCCGGATGTACGAGTTCCGGTGCGCGCGCGCCGCCGTG
GAGGCGGCGCACGAGGAGGTGGAGCGCGCCGTGGCGGCGGGCCCCCGCAAGCAGCAGTGC
GAGGACGGCGACGGCGGCGTCAAGGACAAGGTCGACGAGCTCAAGGCGCGGCTCGACGTG
CTCCGGACCGGCACCGACGGCCTCGTCTGCCAGCTCGACGACTTCCTCGACGACATTGTC
GAGGGCAGGAAGGAGCTCTCCGACCTTTGCAGCCACTGATCGATCGACTGCAACACCATC
ATCATCGCCATGGATGATGGCATGAAATGCTTCATGCTTCGCGTGGTAGAGTACTCGTAC
TGTACGTAGTAGTAGCAAGCATAATCTTCAGTAGCGAGTACGAGTAGTAGTTAGTGGTAC
TCGATGAGACAGAGTGTGTCGCTGTCACAGCATTTTGCTCATGATGTTG

consensusID : consensus_1094#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 394
fasta sequence

                              [CACAGCGAGCAGCAGCGAGCGAGCGAGCGAGACATCAGCCATGGCTGTGCCTCTGCCTCCCCCCAACCTCATCATCACCCTTCTCCCCCTCGTCTAGACACCCATCATTGCCCCTCCACGCCCCCCGCCTCCTCCTCCTCCTCCCCGATCGTCTCCTCCTTGCCCTTCTTGCACCGCGCGCTATATATAGCCAGCCGGAGCTCGACCTTCCCGACGCATCGATCGACCGGTGTTCGATCTTTCTTGCTGTGGGGGATTCGCCATGAACGCCTTCTTCACGGCGCTGGCGAGAGGGCTGGACGACCTGAACAGCGGCCGCGGGCTGGCCTCCCTTGCGGCGCTGCTGCGGGCGGGGGGGCCTCTCAGGGGGTGGACTCCCACTCAAGCTGCTGGT]

[+] EMBL CA754678             [CACAGCGAGCAGCAGCGAGCGAGCGAGCGAGACATCAGCCATGGCTGTGCCTCTGCCTCCCCCCAACCTCATCATCACCCTTCTCCCCCTCGTCTAGACACCCATCATTGCCCCTCCACGCCCCCCGCCTCCTCCTCCTCCTCCCCGATCGTCTCCTCCTTGCCCTTCTTGCACCGCGCGCTATATATAGCCAGCCGGAGCTCGACCTTCCCGACGCATCGATCGACCGGTGTTCGATCTTTCTTGCTGTGGGGGATTCGCCATGAACGCCTTCTTCACGGCGCTGGCGAGAGGGCTGGACGACCTGAACAGCGGCCGCGGGCTGGCCTCCCTTGCGGCGCTGCTGCGGGCGGGGGGGCCTCTCAGGGGGTGGACTCCCACTCAAGCTGCTGGT]




>consensus_1094#1
CACAGCGAGCAGCAGCGAGCGAGCGAGCGAGACATCAGCCATGGCTGTGCCTCTGCCTCC
CCCCAACCTCATCATCACCCTTCTCCCCCTCGTCTAGACACCCATCATTGCCCCTCCACG
CCCCCCGCCTCCTCCTCCTCCTCCCCGATCGTCTCCTCCTTGCCCTTCTTGCACCGCGCG
CTATATATAGCCAGCCGGAGCTCGACCTTCCCGACGCATCGATCGACCGGTGTTCGATCT
TTCTTGCTGTGGGGGATTCGCCATGAACGCCTTCTTCACGGCGCTGGCGAGAGGGCTGGA
CGACCTGAACAGCGGCCGCGGGCTGGCCTCCCTTGCGGCGCTGCTGCGGGCGGGGGGGCC
TCTCAGGGGGTGGACTCCCACTCAAGCTGCTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1094#0      GATCGACCGGTGTTCGATCTTTCTTGCTGTGGGGATTTCGCCATGAACGCCTTCTTCACG 60
consensus_1094#1      ------------------------------------------------------------
                                                                                  

consensus_1094#0      TCGCTGGCGAGAGGGCTGGACGACCTGAGCAGCGGCGGCGGGCTGTCGTCGCTGCCGGCG 120
consensus_1094#1      ------------------------------------------------------------
                                                                                  

consensus_1094#0      CTGCTGCGGGCGGCGGCGCTGCTCAGGGGGCTGCACTCGCAGCTCACGCTGCTGGTGGGG 180
consensus_1094#1      ------------------------------------------------------------
                                                                                  

consensus_1094#0      CAGCTCCACCTGCCGCCCGGTGGGCGGTGGCTCGACGAGTACATGGACGAGACCGCGCGG 240
consensus_1094#1      ------------------------------------------------------------
                                                                                  

consensus_1094#0      CTCTGGGAGGCTTGCCTCGCCGTCAAGGTCGGCCTTGCCGCCGTCGAGCGGTATTGCGCT 300
consensus_1094#1      ------------------------------------------------------------
                                                                                  

consensus_1094#0      GCCGCGTCTTGTGCTGCGGCCGCCATGGATGACTGGCTCCAGGACCCTTCCCCTCTCTCC 360
consensus_1094#1      ------------------------------------------------------------
                                                                                  

consensus_1094#0      ACTCGCCAGGTGATGAGGGCGATCTCTGCGTCGAGGAGGGAGGCCATGGCGGCGGAGGAG 420
consensus_1094#1      ------------------------------------------------------------
                                                                                  

consensus_1094#0      GAGAACCGTGCGCTGTCGGAGGCGAGGATCGCGCCGCTGTCGCTGCAGCTCGACGAGCGG 480
consensus_1094#1      ----------CACAGCGAGCAGCAGCGAGCGAGCGAGCGAGACATCAGCC--ATGGCTG- 47
                                * * *   *  **   ** ** **    *   *  ****   * *   * 

consensus_1094#0      CTGCTGCTGCGCGCCGCGGACGCCAGGTTGAGCGGCTTCAACGGCTTCCGCGGCCTGCTC 540
consensus_1094#1      -TGCCTCTGCCTCCCCCCAACCTCA------------TCATCACCCTTCTCCCCCTCGTC 94
                       ***  ****   ** *  **  **            *** *  * * * *  ***  **

consensus_1094#0      TACGCGCTGCACAACGCCAGCTCGCTGCTGCTCCTCGTCCTCGCCTCCGGCGCCGTCTCC 600
consensus_1094#1      TAGACACCCATCATTGCCCCTCCAC-GCCCCCCGCCTCCTCCTCCTCCTCCCCGATCGTC 153
                      **  * *    **  ***    * * **  * *  *  *  * *****  * *  **  *

consensus_1094#0      TGCGCCGCCGCCGCAGCGGGGCCGTGCTCCGCGGATGGCGCCGCGGACGCCGGCGGGTTC 660
consensus_1094#1      TCCTCC-TTGCCCTTCTTGCACCGCGCGCTATATATAGCCAGCCGGAGCTCGACCTTCCC 212
                      * * **   ***      *  *** ** *     ** **    ****   ** *     *

consensus_1094#0      GTGGCGTCCATCG--CGATGCTGCAGCAGAGGATGGCGGAGGAGGCCGACGCCGACGGTA 718
consensus_1094#1      GACGCATCGATCGACCGGTGTT-CGATCTTTCTTGCTGTGGGGGATT--CGCCATGAACG 269
                      *  ** ** ****  ** ** * *         **  *  ** *     ****       

consensus_1094#0      GCGCCGGCGCGGCGCGGG-GGGGCATCCGGATGTAC-GAGTTCCGGT-GCGCGCGCGCCG 775
consensus_1094#1      CCTTCTTCACGGCGCTGGCGAGAGGGCTGGACGACCTGAACAGCGGCCGCGGGCTGGCCT 329
                       *  *  * ****** ** * *    * *** *  * **    ***  *** **  *** 

consensus_1094#0      CCGTGGAGGCGGCGCACGAGGAGGTGGAGCGCGCCGTGGCGGCGGGCCCCCGC--AAGCA 833
consensus_1094#1      CCCTTGCGGCGCTGCTGCGGGCGGGGGGGC-CTCTCAGGGGGTGGACTCCCACTCAAGCT 388
                      ** * * ****  **    ** ** ** ** * *   ** ** ** * *** *  **** 

consensus_1094#0      GCAGTGCGAGGACGGCGACGGCGGCGTCAAGGACAAGGTCGACGAGCTCAAGGCGCGGCT 893
consensus_1094#1      GCTGGT------------------------------------------------------ 394
                      ** *                                                        

consensus_1094#0      CGACGTGCTCCGGACCGGCACCGACGGCCTCGTCTGCCAGCTCGACGACTTCCTCGACGA 953
consensus_1094#1      ------------------------------------------------------------
                                                                                  

consensus_1094#0      CATTGTCGAGGGCAGGAAGGAGCTCTCCGACCTTTGCAGCCACTGATCGATCGACTGCAA 1013
consensus_1094#1      ------------------------------------------------------------
                                                                                  

consensus_1094#0      CACCATCATCATCGCCATGGATGATGGCATGAAATGCTTCATGCTTCGCGTGGTAGAGTA 1073
consensus_1094#1      ------------------------------------------------------------
                                                                                  

consensus_1094#0      CTCGTACTGTACGTAGTAGTAGCAAGCATAATCTTCAGTAGCGAGTACGAGTAGTAGTTA 1133
consensus_1094#1      ------------------------------------------------------------
                                                                                  

consensus_1094#0      GTGGTACTCGATGAGACAGAGTGTGTCGCTGTCACAGCATTTTGCTCATGATGTTG 1189
consensus_1094#1      --------------------------------------------------------