These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10942#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1498 fasta sequence [CTCTTTGCGAGAAAATCACTGCCAGATTCGAGGGTTTTCGTACAACAGGAGGGGAAGTGCTACAGCTNAAAAGCCCCCCACAAA-ACACATCTTNNACAACAACAGGGCCGTATCATCATGATCATCAAACATACATCCAGCTGGAAGAAG-AAAAAAAGGGGGCAAAAAATAGAATTGAATTACAGATTAGCGGGGTATATAGCCATCCTGTACTTCCTCGAGGAGATCCAATCAACTACGCGTTCTCCAGAGCACATTATCAATCTATGCTGTCAGGTGCGCAGCACAGCTGACATCAACATCTAACATCTCTGAATGAAAGGTGACCTGCTATGTGGCGAAACTTTTTTACTCCTCAAAGCCATCCATCATCG---GGTGACCTCCTTCCGACGAGGTGCTTTTCGATGATTGTTTCCGAGTTGAGCCCCGCCTGTTCTTGGCTTTCTTTGCCTTCATCCTCCGTTTCTTCTCGTTGGCATCAACCCAGGTGTAGTCAGAAGGTATTTGGAATGGATCAACCTCATCTTTCCAGTTACGGCTATCACCACTATCACTGGACTGTGCACCACGCCCCCCTCTAACCCACGAATACCATGAGCCTGATCCTTCTGATTCTTTGCCCTTGGCATCCTGGAATTGCGTTGGGCTTGAGGGTGGGGTAGCAAACTCATCCAAAGGTTGTAATTCCTCAAACTTTGTGAATGTCACGATGACTCGTATTGTTGGAACAATAGGTATCGCAATCTTCACCGGAAATGTGCCTGGAGGCAGTTTAGTAGTCAAGAGTTCCCTAAGCCTTCTGACAGCTTTCACTTTGTTTGCTAAGACATCAAGCAGAGGGATCAGTTCATCCGTCTTCAAAGGGAAATCTGGTGTCAGCCACAACACTGGTCTTAACCCCTTCTTGTATTCACTTTCATGTTTAGTAGAATCCCCTGATGATGCACCCTTCTTCTTCTTGCTGCTGTTCTTCTCCTTTCCCTTTCCTAGGTCACCTGATTCATCCTTACTCCCTTGATTCGCCTTGGATGGTTTCTCGTCATTCTTGGTGCCTTTCTTGCCACCCCAACCAAACCATCCC-TTCTTATCTTTTGCCACGCCATTTGCATCCAAATGATCAGCCCCGCCATCACCTTCCTCGCACCTCTCCTCAAATTCTTCTTCCTGGTTCCCCATTCTCAACGCAGAATCAAGCTGTTTCCTCTCTTCGGCTGTCAACACTTCATCCAGCTCCGCGTCAAGTTCAGTGCCCCTCCCATTCTTCTCCTCCCCCTCCATCGCAAACAGCTCCTCATCTGTCATCGCCCCCGGCACACGCCTTGACTTCACAGTCACCAGAACGTTTAACATATCATAAACCTTAGCTTTCCAATGTCCAACGGCTTCCGTCCTCTCCTGCCGGCGCCAATTCAAATGAGGCACAAGCTCTGCCTGCGTCACGTCGATCCCGGGACGATACATGTTCGTCTTTGACATCAACGCCACCTCAAGTGCGACC] [+] EMBL OSAA31875 [CTCTTTGCGAGAAAATCACTGCCAGATTCGAGGGTTTTCGTACAACAGGAGGGGAAGTGCTACAGCTNAAAAGCCCCCCACAAANACACATCTTNNACAACAACAGGGCCGTATCATCATGATCATCAAACATACATCCAGCTGGAAGAAGAAAAAAAAGGGGGCAAAAAATAGAATTGAATTACAGATTAGCGGGGTATATAGCCATCCTGTACTTCCT ] [-] EMBL AK060586 [ GAGGGGAAGTGCTACAGCTAAAAAGCCCCCCACAAA ACACATCTTTAACAACAACAGGGCCGTATCATCATGACCATCAAACATACATCCAGCTGGAAGAAG AAAATAAGGGGGCAAAAAATAGAATTGAATTACAGATTAGCGGGGTATATAGCCATCCTGTACTTCCTCGAGGAGATCCAATCAACTACGCGTTCTCCAGAGCACATTATCAATCTATGCTGTCAGGTGCGCAGCACAGCTGACAT ] [+] EMBL CB652566 [ tccccttaaCGTTCTCCAGAG CATTATCAATCTATGCTGTCACCTGCGCAGCACAGCTGACATCAACATCTAACATCTCTGAATGAAAGGTGACCTGCTATGTGGCGAAACTTTTTTACTCCTCAAAGCCATCCATCATCG GGTGACCTCCTTCCGACGAGGTGCTTTTCGATGATTGTTTCCGAGTTGAGCCCCGCCTGTTCTTGGCTTTCTTTGCCTTCATCCTCCGTTTCTTCTCGTTGGCATCAACCCAGGTGTAGTCAGAAGGTATTTGGAATGGATCAACCTCATCTTTCCAGTTACGGCTATCACCACTATCACTGGACTGTGCACCACGCCCCCCTCTAACCCACGAATACCATGAGCCTGATCCTTCTGATTCTTTGCCCTTGGCATCCTGGAATTGCGTTGGGCTTGAGGGTGGGGTAGCAAACTCATCCAAAGGTTGTAATTCCTCAAACTTTGTGAATGTCACGATGACTCGTATTGTTGGAACAATAGGTATCGCAATCTTCACCGGAAATGTGCCTGGAGGCAGTTTAGTAGTCAAGAGTTCCCTAAGCCTTCTGACAGCTTTCACTTTGTTTGCTAAGACATCAAGCAGAGGGATCAGTTCATCCGTCTTCAAAGGGAAATCTGGTGTCAGCCACAACACTGGTCTTAACCCCTTCTTGTATTCACTTTCATGTTTAGTAGAATCCCCTGATGATGCACCCTTCTTCTTCTTGCTGCTGTTCTTCTCCTTTCCCTTTCCTANGTCACCTGATTCATCCTTACTCCCTTGATTCGCCTTGGATGGTTTCTCGTCATTCTTGGTGCCTTTCTTGCCACCCCAACCAAACCATCCCTTTCTTATC TTTGCCACGCCATTTGCATCC ] [+] EMBL CB638446 [ TTCTCCAAAGCACATTATCAATCTATGCTGTCAGGTGCGCAGCACAGCTGACATCAACATCTAACATCTCTGAATGAAAGGTGACCTGCTATGTGGCGAAACTTTTTTACTCCTCAAAGCCATCCATCATCG GGTGACCTCCTTCCGACGAGGTGCTTTTCGATGATTGTTTCCGAGTTGAGCCCCGCCTGTTCTTGGCTTTCTTTGCCTTCATCCTCCGTTTCTTCTCGTTGGCATCAACCCAGGTGTAGTCAGAAGGTATTTGGAATGGATCAACCTCATCTTTCCAGTTACGGCTATCACCACTATCACTGGACTGTGCACCACGCCCCCCTCTAACCCACGAATACCATGAGCCTGATCCTTCTGATTCTTTGCCCTTGGCATCCTGGAATTGCGTTGGGCTTGAGGGTGGGGTAGCAAACTCATCCAAAGGTTGTAATTCCTCAAACTTTGTGAATGTCACGATGACTCGTATTGTTGGAACAATAAGTATCGCAATCTTCACCGGAAATGTGCCTGGAGGCAGTTTAGTAGTCAAGAGTTCCCTAAGCCTTCTGACAGCTTTCACTTTGTTTGCTAAGACATCAAGCAGAGGGATCAGTTCATCCGTCTTCAAAGGGAAATCTGGTGTCAGCCAC ] [-] EMBL AA751958 [ ATTATCAATNTATGNTGTCAGGTGCGCAGCACAGCTGACATCAACATCTAACATNTCNGAANGAAAGGTGACCTGNTATGTGGCGAAACTTTTTNANTCNTCAAAGCCATCCATCATCG GGTGACNTCCTTCCGACGAGGTGCTTTTCGATGATTGTTTCCGAGTTGAGCCCCGCCNGTTNTTGGCTTTCTTTGCCTTCATCCTCCGTTTCTTCTCGTTGGCATCAACCCAGGTGTAGTCAGAAGGTATTTGGAATGGATCAACCTCATCTTTCCAGTTACGGCTATCACCACTATCACTGGACTGTGCACCACGCCCCCCTCTAACCCACGAATACCATGAGCCTGATCCTTCTGATTCTTTGCCCTTGGCATCCTGGAATTGCGTTGGGCTTGAGGGTGGGGTAGCAAACTCATCCAAAGGTTGTAATTCCTCAAACNTTGTGAATNTCACG NG NTCGTATTGTTGctntt ] [-] EMBL OSAA31784 [ GGTGCGCAGCACAGCTGACATCAACATCTAACATCTCTGAATGAAAGGTGACCTGCTATGTGGCGAAACTTTTTTACTCCTCAAAGCCATCCATCATCGGGTGGTGACCTCCTTCCGACGAGGTGCTTTTCGATGATTGTTTCCGAGTTGAGCCCCGCCTGTTCTTGGCTTTCTTTGCCTTCATCCTCCGTTTCTTCTCGTTGGCATCAACCCAGGT ] [-] EMBL CB652565 [ TGACTCGTATTGTNGGAACAATAGGTATCGCAATCTTCACCGGAAATGTGCCTGGAGGCAGTTTAGTAGTCAAGAGTTCCCTAAGCCTTCTGACAGCTTTCACTTTGTTTGCTAAGACATCAAGCAGAGGGATCAGTTCATCCGTCTTCAAAGGGAAATCTGGTGTCAGCCACAACACTGGTCTTAACCCCTTCTTGTATTCACTTTCATGTTTAGTAGAATCCCCTGATGATGCACCCTTCTTCTTCTTGCTGCTGTTCTTCTCCTTTCCCTTTCCTAGGTCACCTGATTCATCCTTACTCCCTTGATTCGCCTTGGATGGTTTCTCGTCATTCTTGGTGCCTTTCTTGCCACCCCAACCAAACCATCCC TTCTTATCTTTTGCCACGCCATTTGCATCCAAATGATCAGCCCCGCCATCACCTTCCTCGCACCTCTCCTCAAATTCTTCTTCCTGGTTCCCCATTCTCAACGCAGAATCAAGCTGTTTCCTCTCTTCGGCTGTCAACACTTCATCCAGCTCCGCGTCAAGTTCAGTGCCCCTCCCATTCTTCTCCTCCCCCTCCATCGCAAACAGCTCCTCATCTGTCATCGCCCCCGGCACACGCCTTGACTTCACAGTCACCAGAACGTTTAACATATCATAAACCTTAGCTTTCCAATGTCCAACGGCTTCCGTCCTCTCCTGCCGGCGCCAATTCAAATGAGGCACAAGCTCTGCCTGCGTCACGTCGATCCCGGGACGATACATGTTCGTCTTTGACATCAACGCCACCTCAAGTGCGACC] [-] EMBL CA762596 [ ACTGGTCTTAACCCCTTCTTGTATTCACTTTCATGTTTAGTAGAATCCCCTGATGATGCACCCTTCTTCTTCTTGCTGCTGTTCTTCTCCTTTCCCTTTCCTAGGTCACCTGATTCATCCTTACTCCCTTGATTCGCCTTGGATGGTTTCTCGTCATTCTTGGTGCCTTTCTTGCCACCCCAACCAAACCATCCC TTCTTATCTTTTGCCACGCCATTTGCATCCAAATGATCAGC ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||