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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1693 fasta sequence
[TTTCCCTTATCCGGAAACAGCCTTTGCTTTCCCCCTCCCTAAAACCCCCCGCAGCGGCGCAGCGCCACCTCTCCTCCTCAGCCGAAGCGTCGGGGCCATGGCCATGGCGATGGCGTCGCCGCCCGCTTGCCCATTCCTCCTCTCGCTCTCGGCCGGCGCCACCGCCATTTCCACCGTGTCCGCCGCCTACGGTTCCGTTTCCGCCCCGCGCGCGCCTCTCTTCCTCCTCGCCTCCCCGCGTCCCGTCCCGCCTCGCCGACCCCTCGCCGCGGGCTCCTCATCTCCCAAGGCCGCGGCACCCGCCGCCGTCGAGATCCCCGAGGAGTACGTGGACGATGTTGATGCGGTGAACATTGCGCAGGACGTCACCCAGCTGATTGGGAAAACCCCAATGGTGTATCTGAATAATGTTGTCGACGGATGTGTTGCTAATATCGCTGCAAAACTTGAGTACATGGGACCTTGCAGGAGCGTCAAAGACAGGATTGGATTAAGCATGATTAATGATGCTGAAGAGAAAGGATTAATTTTTCCAAACAAGACCATTTTGGTTGAACCAACTACTGGAAATACTGGTATAGGCCTAGCTTCTGTGGCTGCTGCTAGGGGATACAAGCTAATAGCAACTGTACCTTCATCAATAGATGTTGAGAGATGTGTTCTTCTACGTGCATTTGGAGCTGAGATTGTGTTAACTGATCCTAACAAGGGACTAAAAGGAGCTCTTGATAAAGCAGAGGAAATTGTTTCGAAGACACCAAATGCATACATGTTTCAGCAGTTTAACAATTCCGCTAATAGTGAGATCCACTTTCAAACCACAGGCCCAGAAATATGGGAAGACACCTTGGGTACTGTTGACATACTAGTTGC-AAGCATTGGCACAGGTGGCACCATTACAGGCACTGGGCGTTATCTGAAAATGATGAACAAAGATATTAAGGTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGGTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATGAAGTTGTGAAGGTTACCACCACAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTGGTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCGGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTCCGATATATGACTCGGTCCGAAGAATGAGGAAGAGATAACTAACTTCTGCCACTCCAGGAAGAAGAAGGTTGCCAGTTCTTAAACCTAACATACTTCCACGGCATAACAGATTTTGAAGGGTGAGGTTCCAGGTAGATTACAACGAGTAGTGCCTGAAATTTTGAAACGCCATAGGCACTGGTCAGCCTCACAGAAGGTTGAAATTGCGCACGGTTGCTGACGAGTAGTTTGCAAGCCTGCAATTTGGTTCCAGGGAATCGTGTCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACATCCACGATGGAATATGTAGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGAGCTGATCTTGTTGACTTATTAAAAAA]
[+] EMBL AK065664 [TTTCCCTTATCCGGAAACAGCCTTTGCTTTCCCCCTCCCTAAAACCCCCCGCAGCGGCGCAGCGCCACCTCTCCTCCTCAGCCGAAGCGTCGGGGCCATGGCCATGGCGATGGCGTCGCCGCCCGCTTGCCCATTCCTCCTCTCGCTCTCGGCCGGCGCCACCGCCATTTCCACCGTGTCCGCCGCCTACGGTTCCGTTTCCGCCCCGCGCGCGCCTCTCTTCCTCCTCGCCTCCCCGCGTCCCGTCCCGCCTCGCCGACCCCTCGCCGCGGGCTCCTCATCTCCCAAGGCCGCGGCACCCGCCGCCGTCGAGATCCCCGAGGAGTACGTGGACGATGTTGATGCGGTGAACATTGCGCAGGACGTCACCCAGCTGATTGGGAAAACCCCAATGGTGTATCTGAATAATGTTGTCGACGGATGTGTTGCTAATATCGCTGCAAAACTTGAGTACATGGGACCTTGCAGGAGCGTCAAAGACAGGATTGGATTAAGCATGATTAATGATGCTGAAGAGAAAGGATTAATTTTTCCAAACAAGACCATTTTGGTTGAACCAACTACTGGAAATACTGGTATAGGCCTAGCTTCTGTGGCTGCTGCTAGGGGATACAAGCTAATAGCAACTGTACCTTCATCAATAGATGTTGAGAGATGTGTTCTTCTACGTGCATTTGGAGCTGAGATTGTGTTAACTGATCCTAACAAGGGACTAAAAGGAGCTCTTGATAAAGCAGAGGAAATTGTTTCGAAGACACCAAATGCATACATGTTTCAGCAGTTTAACAATTCCGCTAATAGTGAGATCCACTTTCAAACCACAGGCCCAGAAATATGGGAAGACACCTTGGGTACTGTTGACATACTAGTTGC AAGCATTGGCACAGGTGGCACCATTACAGGCACTGGGCGTTATCTGAAAATGATGAACAAAGATATTAAGGTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGGTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATGAAGTTGTGAAGGTTACCACCACAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTGGTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCGGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTCCGATATATGACTCGGTCCGAAGAATGAGGAAGAGATAACTAACTTCTGCCACTCCAGGAAGAAGAAGGTTGCCAGTTCTTAAACCTAACATACTTCCACGGCATAACAGATTTTGAAGGGTGAGGTTCCAGGTAGATTACAACGAGTAGTGCCTGAAATTTTGAAACGCCATAGGCACTGGTCAGCCTCACAGAAGGTTGAAATTGCGCACGGTTGCTGACGAGTAGTTTGCAAGCCTGCAATTTGGTTCCAGGGAATCGTGTCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACATCCACGATGGAATATGTAGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATAC ]
[+] EMBL CB680193 [ CCGCCCCGCGCGCGCCTCTCTTCCTCCTCGCCTCCCCGCGTCCCGTCCCGCCTCGCCGACCCCTCGCCGCGGGCTCCTCATCTCCCAAGGCCGCGGCACCCGCCGCCGTCGAGATCCCCGAGGAGTACGTGGACGATGTTGATGCGGTGAACATTGCGCAGGACGTCACCCAGCTGATTGGGAAAACCCCAATGGTGTATCTGAATAATGTTGTCGACGGATGTGTTGCTAATATCGCTGCAAAACTTGAGTACATGGGACCTTGCAGGAGCGTCAAAGACAGGATTGGATTAAGCATGATTAATGATGCTGAAGAGAAAGGATTAATTTTTCCAAACAAGACCATTTTGGTTGAACCAACTACTGGAAATACTGGTATAGGCCTAGCTTCTGTGGCTGCTGCTAGGGGATACAAGCTAATAGCAACTGTACCTTCATCAATAGATGTTGAGAGATGTGTTCTTCTACGTGCATTTGGAGCTGAGATTGTGTTAACTGATCCTAACAAGGGACTAAAAGGAGCTCTTGATAAAGCAGAGGAAATTGTTTCGAAGACACCAAATGCATACATGTTTCAGCAGTTTAACAATTCCGCTAATAGTGAGATCCACTTTCAAACCACAGGCCCAGAAATATGGGAAGACACCTTGGGTACTGTTGACATACTAGTTGC AAGCATTGGCACAGGTGGCACCATTACAGGCACTGGGCGTTATCTGAAAATGATGAACAAAGATATTAAGGTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGGTTATATTCCAAGCATATTAGATGTTCAG ]
[+] EMBL BP184825 [ CCGCCCCGCGCGCGCCTCTCTTCCTCCTCGCCTCCCCGCGTCCCGTCCCGCCTCGCCGACCCCTGGCCGCGGGCTCCTCATCTCCCAAGGCCGCGGCACCCGCCGCCGTCGAGATCCCCGAGGAGTACGTGGACGATGTTGATGCGGTGAACATTGCGCAGGACGTCACCCAGCTGATTGGGAAAACCCCAATGGTGTATCTGAATAATGTTGTCGACGGATGTGTTGCTAATATCGCTGCAAAACTTGAGTACATGGGACCTTGCAGGAGCGTCAAAGACAGGATTGGATTAAGCATGATTAATGATGCTGAAGAGAAAGGATTAATTTTTCCAAACAAGACCATTTTGGTTGAACCAACTACTGGAAATACTGGTATAGGCCTAGCTTCTGTGGCTGCTGCTAGGGGATACAAGCTAATAGCAACTGTACCTTCATCAATAGATGTTGAGAGATGTGTTCTTCTACGTGCATTTGGAGCTGAGATTGTGTTAACTGATCCTAACAAGGGACTAAAAGGAGCTCTTGATAAAGCAGAGGAAATTGTTTCGAAGACACCAAATGCATACATGTTTCAACAGTTTAACAATT CGCTAATAGTGAGATCCACTTTCAAACCACAGGCCCAGAAATATGGGAAGACACCTTGGGTACTGTTGACATACTAGTTGCAAAGCATTGGCACAGGTGGCACCATTACAGGCACTGGGCGT ]
[-] EMBL CB680194 [ AACAAAGATATTAAGGTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGGTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATGAAGTTGTGAAGGTTACCACCACAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTGGTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCGGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTCCGATATATGACTCGGTCCGAAGAATGAGGAAGAGATAACTAACTTCTGCCACTCCAGGAAGAAGAAGGTTGCCAGTTCTTAAACCTAACATACTTCCCCGGCATAACAGATTTTGAAGGGTGAGGTTCCAGGTAGATTACAACGAGTAGTGCCTGAAATTTTGAAACGCCATAGGCACTGGTCAGCCTCACAGAAGGTTGAAATTGCGCACGGTTGCTGACGAGTAGTTTGCAAGCCTGCAATTTGGTTCCAGGGAATCGTGTCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACATCCACGATGGAATATGTAGAATTAGATATGGGAGCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTGTTGAGCTGATCTTGTTGACT ]
[+] EMBL BI805728 [ AATTGATT CGGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTCCGATATATGACTCGGTCCGAAGAATGAGGAAGAGATAACTAACTTCTGCCACTCCAGGAAGAAGAAGGTTGCCAGTTCTTAAACCTAACATACTTCCACGGCATAACAGATTTTGAAGGGTGAGGTTCCAGGTAGATTACAACGAGCAGTGCCTGAAATTTTGAAACGCCATAGGCACTGGCCAGCCTCACAGAAGGTTGAAATTGCGCACGGTTGCTGACGAGTAGTTTGCAAGCCTGCAATTTGGTTCCAGGGAATCGTGTCC AAACTATTCATAACTGTAAATCATCTGCACC AAGCGTCTGGAACCAGACCACATCCACGATGGAATATGTTGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGA CTGATCTTGTTGACTTATTAAAAAA]
[+] EMBL AU063635 [ ccgCAGATTTTGAAGGGTGAGGTTCCAGGTAGATTACAACGAGTAGTGCCTGAAATTTTGAAACGCCATAGGCACTGGTCAGCCTCACAGAAGGTTGAAATTGCGCACGGTTGCTGACGAGTAGTTTGCAAGCCTGCAATTTGGTTCCAGGGAATCGTGTCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACATCCACGATGGAATTTGTAGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGAGCTGA ]
[+] EMBL AU063620 [ AGGGTGAGGTTCCAGGTAGATTACAACGAGTAGTGCCTGAAATTTTGAAACGCCATAGG ACTGGTCAGCCTCACAGAAGGTTGAAATTGCGCACGGTTGCTGACGAGTAGTTTGCAAGCCTGCAATTTGGTTCCAGGGAATCGTGTCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACATCCACGATGGAATTTGTAGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGAGCTGAa ]
consensusID : consensus_10948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence
[GATTCGGCACGAGTTGAAACGCCATAGGCACTGGCCAGCCTCACAGAAGGTTGAAATTGCGCACGGTTGCTGACGAGNAGTTTGCAAGCCTGCAATTTGGTTCCAGGGNAATCGTGCCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACATCCACGATGGAATATGTTGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGAGCTGATCTTGTTGACTT]
[+] EMBL AA751851 [GATTCGGCACGAGTTGAAACGCCATAGGCACTGGCCAGCCTCACAGAAGGTTGAAATTGCGCACGGTTGCTGACGAGNAGTTTGCAAGCCTGCAATTTGGTTCCAGGGNAATCGTGCCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACATCCACGATGGAATATGTTGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGAGCTGATCTTGTTGACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10948#0 TTTCCCTTATCCGGAAACAGCCTTTGCTTTCCCCCTCCCTAAAACCCCCCGCAGCGGCGC 60
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 AGCGCCACCTCTCCTCCTCAGCCGAAGCGTCGGGGCCATGGCCATGGCGATGGCGTCGCC 120
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 GCCCGCTTGCCCATTCCTCCTCTCGCTCTCGGCCGGCGCCACCGCCATTTCCACCGTGTC 180
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 CGCCGCCTACGGTTCCGTTTCCGCCCCGCGCGCGCCTCTCTTCCTCCTCGCCTCCCCGCG 240
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 TCCCGTCCCGCCTCGCCGACCCCTCGCCGCGGGCTCCTCATCTCCCAAGGCCGCGGCACC 300
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 CGCCGCCGTCGAGATCCCCGAGGAGTACGTGGACGATGTTGATGCGGTGAACATTGCGCA 360
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 GGACGTCACCCAGCTGATTGGGAAAACCCCAATGGTGTATCTGAATAATGTTGTCGACGG 420
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 ATGTGTTGCTAATATCGCTGCAAAACTTGAGTACATGGGACCTTGCAGGAGCGTCAAAGA 480
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 CAGGATTGGATTAAGCATGATTAATGATGCTGAAGAGAAAGGATTAATTTTTCCAAACAA 540
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 GACCATTTTGGTTGAACCAACTACTGGAAATACTGGTATAGGCCTAGCTTCTGTGGCTGC 600
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 TGCTAGGGGATACAAGCTAATAGCAACTGTACCTTCATCAATAGATGTTGAGAGATGTGT 660
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 TCTTCTACGTGCATTTGGAGCTGAGATTGTGTTAACTGATCCTAACAAGGGACTAAAAGG 720
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 AGCTCTTGATAAAGCAGAGGAAATTGTTTCGAAGACACCAAATGCATACATGTTTCAGCA 780
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 GTTTAACAATTCCGCTAATAGTGAGATCCACTTTCAAACCACAGGCCCAGAAATATGGGA 840
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 AGACACCTTGGGTACTGTTGACATACTAGTTGCAAGCATTGGCACAGGTGGCACCATTAC 900
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 AGGCACTGGGCGTTATCTGAAAATGATGAACAAAGATATTAAGGTTATTGGGGTAGAACC 960
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 TGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGGTTATATTCCAAGCATATTAGATGT 1020
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 TCAGCTGCTTGATGAAGTTGTGAAGGTTACCACCACAGAGGCAGTCGATGTTGCAAGGGA 1080
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 ACTTGCACTAAAAGAGGGCCTGCTGGTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGC 1140
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 TATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCGGTTATTTTCCCCAG 1200
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 CTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTCCGATATATGACTCGGTCCGAAG 1260
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 AATGAGGAAGAGATAACTAACTTCTGCCACTCCAGGAAGAAGAAGGTTGCCAGTTCTTAA 1320
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 ACCTAACATACTTCCACGGCATAACAGATTTTGAAGGGTGAGGTTCCAGGTAGATTACAA 1380
consensus_10948#1 ------------------------------------------------------------
consensus_10948#0 CGAGTAGTGCCTGAAATTTTGAAACGCCATAGGCACTGGTCAGCCTCACAGAAGGTTGAA 1440
consensus_10948#1 -----GATTCGGCACGAGTTGAAACGCCATAGGCACTGGCCAGCCTCACAGAAGGTTGAA 55
* * * ********************* ********************
consensus_10948#0 ATTGCGCACGGTTGCTGACGAGTAGTTTGCAAGCCTGCAATTTGGTTCCAGGGAA-TCGT 1499
consensus_10948#1 ATTGCGCACGGTTGCTGACGAGNAGTTTGCAAGCCTGCAATTTGGTTCCAGGGNAATCGT 115
********************** ****************************** * ****
consensus_10948#0 GTCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACAT 1559
consensus_10948#1 GCCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACAT 175
* **********************************************************
consensus_10948#0 CCACGATGGAATATGTAGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATA 1619
consensus_10948#1 CCACGATGGAATATGTTGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATA 235
**************** *******************************************
consensus_10948#0 GTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGAGCTGATCTTGTT 1679
consensus_10948#1 GTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGAGCTGATCTTGTT 295
************************************************************
consensus_10948#0 GACTTATTAAAAAA 1693
consensus_10948#1 GACTT--------- 300
*****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||