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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10962#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1405 fasta sequence
[GCCGCGCCACGTACGCCGCATCGCATGCGCGCGCTTTCCCTCGCCAGAGCAAGTAGCCCGCCGCCTCTTCTTCTTCACCTCCGACGAGCCCTTGCACCCGCGTCGTCGTCTTCTCCGGCGCCGGTGCTGTTGCTGCGTCCTGCGGTTTCTTGTTCTTCTTTGTTTGTTAGCGACAGGGCGGCGGCGGCTCGCCGGAGCAGCGGCAGCAGCAGGAGAAGCATGGCGTCGCAGCAGTTCCCGCCGCAGAATCAGGAGACGCAGCCGGGGAAGGAGCACGCCATGGATCCCCGCCCCGAGGCCATCATCCAGAGCTACAAGCCAGCCAACAAGCTGAAGGACAAGGTGGCGATCGTGACCGGCGGCGACTCCGGCATCGGGCGGGCGGTGTGCCTGTGCTTCGCGCTGGAGGGCGCGACGGTGGCGTTCACGTACGTGAAGGGGCAGGAGGAGAAGGACGCGGAGGAGACGCTCCGCGCGCTGCGCGACATCAGGGCGCGCACCGGCGCCAAGGACCCCATGGCGATCCCCGCCGACCTCGGGTACGACGACAACTGCCGCAAGGTGGTCGACGAGGTCGCCGGCGCGTACGGCGGCGCCATCGACATCCTCGTCAACAACGCCGCCGAGCAGTACGAGCGCCCCTCCATCACCGACATCACCGAGGACGACCTGGAACGCGTGTTCCGCACCAACATCTTCTCCTACTTCTTCATGTCGAAGCACGCCGTGAAGCGGATGCGCGATCGCCGCGGCGGCGCCGGCGCCGGCGGGTGCAGCATCATCAACACGTCGTCGATCAACGCGTACAAGGGGAACAAGACGCTGCTGGACTACACGGCGA-CCAAGGGCGCCATC-GTGGCGTTCACGAGGG-CGCTGGCGCTGCAGCTGGCGG-AGG-AGGGG-ATCC-GGGTGAACGGCGTCGCGCCGGGGCCGATCTGGACGCCGCTGATCCCGGCGTCGTTCGCGGAGGAGAAGGTGAGGCAGTTCGGCTCCCAGGTGCCCATGGGCCGCGCCGGCCAGCCGTCGGAGGTGGCGCCCAGCTTCGTCTTCCTCGCCAGCGACGACGCCTCCTACATGTCCGGCCAGATGCTGCACGTCAACGGCGGCGTCATCGTCAATGGCTAGTTTTTCACTTGTCCCATATCGCCGCCGGCGGGCGAGCTCGCCGTCGCCGGCCGCCGTGTCTGTCTTGGCTTTTGCTGTGGGCATGTGCCCACGTGTTTGCAGTGCGAGTCCACCACATGTCAGTCAGTA-GTAGCTTGTGATCCTGTGATACTGTGATGA-TTAGAGTTGCAGTTGTTGTCTGTGTCCTAAGCTT-GCAACTCAATCTGCAAGGAAGAAGATGAATAAAAACGTCCCATCTCATCACTAAAAAAAAAAAAAGAAAAAAAAAAAAAANCAAAAAAAA]
[+] EMBL AK110652 [GCCGCGCCACGTACGCCGCATCGCATGCGCGCGCTTTCCCTCGCCAGAGCAAGTAGCCCGCCGCCTCTTCTTCTTCACCTCCGACGAGCCCTTGCACCCGCGTCGTCGTCTTCTCCGGCGCCGGTGCTGTTGCTGCGTCCTGCGGTTTCTTGTTCTTCTTTGTTTGTTAGCGACAGGGCGGCGGCGGCTCGCCGGAGCAGCGGCAGCAGCAGGAGAAGCATGGCGTCGCAGCAGTTCCCGCCGCAGAATCAGGAGACGCAGCCGGGGAAGGAGCACGCCATGGATCCCCGCCCCGAGGCCATCATCCAGAGCTACAAGCCAGCCAACAAGCTGAAGGACAAGGTGGCGATCGTGACCGGCGGCGACTCCGGCATCGGGCGGGCGGTGTGCCTGTGCTTCGCGCTGGAGGGCGCGACGGTGGCGTTCACGTACGTGAAGGGGCAGGAGGAGAAGGACGCGGAGGAGACGCTCCGCGCGCTGCGCGACATCAGGGCGCGCACCGGCGCCAAGGACCCCATGGCGATCCCCGCCGACCTCGGGTACGACGACAACTGCCGCAAGGTGGTCGACGAGGTCGCCGGCGCGTACGGCGGCGCCATCGACATCCTCGTCAACAACGCCGCCGAGCAGTACGAGCGCCCCTCCATCACCGACATCACCGAGGACGACCTGGAACGCGTGTTCCGCACCAACATCTTCTCCTACTTCTTCATGTCGAAGCACGCCGTGAAGCGGATGCGCGATCGCCGCGGCGGCGCCGGCGCCGGCGGGTGCAGCATCATCAACACGTCGTCGATCAACGCGTACAAGGGGAACAAGACGCTGCTGGACTACACGGCGA CCAAGGGCGCCATC GTGGCGTTCACGAGGG CGCTGGCGCTGCAGCTGGCGG AGG AGGGG ATCC GGGTGAACGGCGTCGCGCCGGGGCCGATCTGGACGCCGCTGATCCCGGCGTCGTTCGCGGAGGAGAAGGTGAGGCAGTTCGGCTCCCAGGTGCCCATGGGCCGCGCCGGCCAGCCGTCGGAGGTGGCGCCCAGCTTCGTCTTCCTCGCCAGCGACGACGCCTCCTACATGTCCGGCCAGATGCTGCACGTCAACGGCGGCGTCATCGTCAACGGCTAGTTTTTCACTTGTCCCATCTCGCCGCCGGCGGGCGAGCTCGCCGTCGCCGGCCGCCGTGTCTGTCTTGGCTTTTGCTGTGGGCATGTGCCCACGTGTTTGCAGTGCGAGTCCACCACGTGTCAGTCAGTA GTAGCTTGTGATCCTGTGATACTGTGATGA GTAGAGTTGCAGTTGTTGTCTGTGTACTAAGCTT GCAGCTCAATCTGCAAGGAAGAAGATGAATAAAAACGTCCCA ]
[+] EMBL OSC333 [ gGCGCTGCG ANCATCAGGGCGCG NNCGGCG CAAGGACCCCATGGCGATCCCCGCNGACCTCGGGTACGACGACAACTGCCGCAAGGTGGTCGACGAGGTCGCCGGCGCGTACGGCGGCGCCATCNACATCCTCGTNAACAACGCCGCCGAGCAGTACGAGCGCCCCTCCATCACCGACATCACCGAGGACGACCTGGAACGCNTGTTCCGCACCAACATCTTCTCCTACTTCTTCATGTCGAAGCACGCCGTGAAGCGGA ]
[+] EMBL BI797481 [ TCGTCGATCAACGCGTACAAGGGGAAC AGACGCTGCTGGACTACACGGCGA CCAAGGGCGCCATC GTGGCGTTCACGAGGG CGCTGGCGCTGCAGCT GCGG AGG AGGGG ATCC GGGTGAACGGCGTCGCGCCGGGGCCGATCTGGACGCCGCTGATCCCGGCGTCGTTCGCGGAGGAGAAGGTGAGGCAGTTCGGCTCCCAGGTGCCCATGGGCCGCGCCGGCCAGCCGTCGGAGGTGGCGCCCAGCTTCGTCTTCCTCGCCAGCGACGACGCCTCCTACATGTCCGGCCAGATGCTGCACGTCAACGGCGGCGTCATCGTCAATGGCTAGTTTTTCACTTGTCCCATATCGCCGCCGGCGGGCGAGCTCGCCGTCGCCGGCCGCCGTGTCTGTCTTGGCTTTTGCTGTGGGCATGTGCCCACGTGTTTGCAGTGCGAGTCCACCACATGTCAGTCAGTA GTAGCTTGTGATCCTGTGATACTGTGATGA TTAGAGTTGCAGTTGTTGTCTGTGTCCTAAGCTT GCAACTCAATCTGCAAGGAAGAAGATGAATAAAAACGTCCCATCTCATCACTAAAAA ]
[+] EMBL BI797223 [ CTACACGGCGACCCAAGGGCGCCATCTGTGGCGTTCACGAGGGCCGCTGGCGCTGCATCTGCCGGAAGGAAGGGGAATCCGGGGTGAACGGCGTCGCGCC GGGCCGATCTGGACGCCGCTGATCCCGGCGTCGTTC CGGAGGAGAAGGTGA GCAGTTCGGCTCCCAGGTGCCCAT GGCCGCGCCGGCCAGCCGTCGGAGGTGGCGCCCAGCTTCGTCTTCCTCGCCAGCGACGACGCCTCCTACATGTCCGGCCAGATGCTGCACGTCAACGGCGGCGTCATCGTCAATGGCTAGTTTTTCACTTGTCCCATATCGCCGCCGGCGGGCGAGCTCGCCGTCGCCGGCCGCCGTGTCTGTCTTGGCTTTTGCTGTGGGCATGTGCCCACGTGTTTGCAGTGCGAGTCCACCACATGTCAGTCAGTA GTAGCTTGTGATCCTGTGATACTGTGATGA TTAGAGTTGCAGTTGTTGTCTGTGTCCTAAGCTT GCAACTCAATCTGCAAGGAAGAAGATGAATAAAAACGTCCCATCTCATCA AAAA ]
[+] EMBL BI798062 [ TACAC GCGA CCAAGGGCCCCATC GTGGCGTTCACGA GG C CTGGC CTGCAGCTGCCGG AGG A GGG ATCC GGGTGAACGGCGTCGCGCC GGGCCGATCTGGACGCCGCTGATCCCGGCGTCGTTC CGGAGGAGAAGGTGA GCAGTTCGGCTCCCAGGTGCCCAT GGCCGCGCCGGCCAGCCGTCGGAGGTGGCGCCCAGCTTCGTCTTCCTCGCCAGCGACGACGCCTCCTACATGTCCGGCCAGATGCTGCACGTCAACGGCGGCGTCATCGTCAATGGCTAGTTTTTCACTTGTCCCATATCGCCGCCGGCGGGCGAGCTCGCCGTCGCC GCCGCCGTGTCTGTCTTGGCTTTTGCTCCGGGCATGTGCCCACGTGTTT CAGTGCGAGTCCACCACATGTCAGTCAGTA GTAGCTTGTGATCCTGTGATACTGTGATGA TTAGAGTT CAGTTGTTGTCTGTGTCCTAAGCTT GCAACTCAATCTGCAAGGAAGAAGCCGCCT AAAAC TCCCATCTCATCA AAAAAAA ]
[+] EMBL AU172698 [ TTCGGCTCCCAGGTGCCCATGGGCCGCGCCGGCCANCCGTCGGAGGTGGCGCCCAGCTTCGTCTTCCTCGCCAGCGACGACGCCTCCTACATGTCCGGCCANATGCTGCACGTCAACGGCGGNGTCATCGTCAACGGCTAGTTTTTCACTTGTCCCATCTCGCCGCCGGCGGGCGAGCTCGCCGTCGCCGGCCGCCGTGTCTGTCTTGGCTTTTGCTGTGGGCATGTGCCCACGTGTTTGCAGTGCGAGTCCNCCACGTGTCAGTCAGTA GTAGCTTGTGATCCTGTGATACTGTGATGA GTANAGTTGCAGTTGTTGTCTGTGTACTAAGCTT GCAACTCAATNTGCAAGGAAGAAGATGAATAAAAACGTCCCATCTCATCGCTAAAAAAAAAAAAAGAAAAAAAAAAAAAANCAAAAAAAA]
[+] EMBL BI797964 [ TGGGCATGTGCCCACGTGTTTGCAGTGCGAGTCCACCACATGTCAGTCAGTATGTAGCTTGTGATCCTGTGAT CTGTGATGATTTAGAGTT CAGTT TTGTCTGTGTCCTAAGCTTGGCAACTCAATCTGCAAGGAAGAAGATGAAT ACGTCCCATCTCATCACT ]
consensusID : consensus_10962#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 166 fasta sequence
[GGCNCNACCGGCGAAGGACCCCATGGCGATCCCCGCCGACCTCGGGTACGACGACAACTTCCGCAAGTGGTCGACGAGNTGCCGNCNCGTACGNTCCATCGACATCTGTAACAACNNCTGAGAGTCNNNNTTCATAGAATAGAGGATATGGAACNTGTTNAAAATT]
[+] EMBL AA751181 [GGCNCNACCGGCGAAGGACCCCATGGCGATCCCCGCCGACCTCGGGTACGACGACAACTTCCGCAAGTGGTCGACGAGNTGCCGNCNCGTACGNTCCATCGACATCTGTAACAACNNCTGAGAGTCNNNNTTCATAGAATAGAGGATATGGAACNTGTTNAAAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10962#0 GCCGCGCCACGTACGCCGCATCGCATGCGCGCGCTTTCCCTCGCCAGAGCAAGTAGCCCG 60
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 CCGCCTCTTCTTCTTCACCTCCGACGAGCCCTTGCACCCGCGTCGTCGTCTTCTCCGGCG 120
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 CCGGTGCTGTTGCTGCGTCCTGCGGTTTCTTGTTCTTCTTTGTTTGTTAGCGACAGGGCG 180
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 GCGGCGGCTCGCCGGAGCAGCGGCAGCAGCAGGAGAAGCATGGCGTCGCAGCAGTTCCCG 240
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 CCGCAGAATCAGGAGACGCAGCCGGGGAAGGAGCACGCCATGGATCCCCGCCCCGAGGCC 300
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 ATCATCCAGAGCTACAAGCCAGCCAACAAGCTGAAGGACAAGGTGGCGATCGTGACCGGC 360
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 GGCGACTCCGGCATCGGGCGGGCGGTGTGCCTGTGCTTCGCGCTGGAGGGCGCGACGGTG 420
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 GCGTTCACGTACGTGAAGGGGCAGGAGGAGAAGGACGCGGAGGAGACGCTCCGCGCGCTG 480
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 CGCGACATCAGGGCGCGCACCGGCGCCAAGGACCCCATGGCGATCCCCGCCGACCTCGGG 540
consensus_10962#1 -----------GGCNCN-ACCGGCG--AAGGACCCCATGGCGATCCCCGCCGACCTCGGG 46
*** * ******* *********************************
consensus_10962#0 TACGACGACAACTGCCGCAAGGTGGTCGACGAGGTCGCCGGCGCGTACGGCGGCGCCATC 600
consensus_10962#1 TACGACGACAACTTCCGCAAG-TGGTCGACGAGNT-GCCGNCNCGTACGNT----CCATC 100
************* ******* *********** * **** * ****** *****
consensus_10962#0 GACATCCTCGTCAACAACGCCGCCGAGCAGTACGAGCGCCCCTCCATCACCGACATCACC 660
consensus_10962#1 GACATCTGTAACAACNNC------------TGAGAGTCNNNNTTCATAGAATAGAGGATA 148
****** **** * * *** * *** * * *
consensus_10962#0 GAGGACGACCTGGAACGCGTGTTCCGCACCAACATCTTCTCCTACTTCTTCATGTCGAAG 720
consensus_10962#1 TGGAACNTGTTNAAAATT------------------------------------------ 166
* ** * **
consensus_10962#0 CACGCCGTGAAGCGGATGCGCGATCGCCGCGGCGGCGCCGGCGCCGGCGGGTGCAGCATC 780
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 ATCAACACGTCGTCGATCAACGCGTACAAGGGGAACAAGACGCTGCTGGACTACACGGCG 840
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 ACCAAGGGCGCCATCGTGGCGTTCACGAGGGCGCTGGCGCTGCAGCTGGCGGAGGAGGGG 900
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 ATCCGGGTGAACGGCGTCGCGCCGGGGCCGATCTGGACGCCGCTGATCCCGGCGTCGTTC 960
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 GCGGAGGAGAAGGTGAGGCAGTTCGGCTCCCAGGTGCCCATGGGCCGCGCCGGCCAGCCG 1020
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 TCGGAGGTGGCGCCCAGCTTCGTCTTCCTCGCCAGCGACGACGCCTCCTACATGTCCGGC 1080
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 CAGATGCTGCACGTCAACGGCGGCGTCATCGTCAATGGCTAGTTTTTCACTTGTCCCATA 1140
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 TCGCCGCCGGCGGGCGAGCTCGCCGTCGCCGGCCGCCGTGTCTGTCTTGGCTTTTGCTGT 1200
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 GGGCATGTGCCCACGTGTTTGCAGTGCGAGTCCACCACATGTCAGTCAGTAGTAGCTTGT 1260
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 GATCCTGTGATACTGTGATGATTAGAGTTGCAGTTGTTGTCTGTGTCCTAAGCTTGCAAC 1320
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 TCAATCTGCAAGGAAGAAGATGAATAAAAACGTCCCATCTCATCACTAAAAAAAAAAAAA 1380
consensus_10962#1 ------------------------------------------------------------
consensus_10962#0 GAAAAAAAAAAAAAANCAAAAAAAA 1405
consensus_10962#1 -------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||