These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10966#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 502 fasta sequence [CACTCCTCCTCCTTCCCCATTCCCCCAATCCCACACCGGCGGCGGCGGCGGCGGCGCGAGCAGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTT-CCTTCTGGCGCGCGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCCG-CCTGGTGCGC--GTGCCTCAAGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGAC-GGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAAT-AAACAT-TTGGTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGAATAAATTCTTTCTGTGACAGTGGATCTGTTTTTCATACAATGTTATTTTCGTTGCTAATTGCCCTTGCTGTAAAAAAAAAAAAAAAA] [+] EMBL AA750711 [CACTCCTCCTCCTTCCCCATTCCCCCAATCCCACACCGGCGGCGGCGGCGGCGGCGCGAGCAGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTT CCTTCTGGCGCGCGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCCG CCTGGTGCGC GTGCCTCAAGGAG CCCACAAGTCCGAGG CG CT CCGCGAGAAGGT CACTTCGC ] [+] EMBL BE040989 [ ccacacCGGCGGCGGCGGCGCGAGCAGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTTCCCTTCTGGCGCGCGGCGGGGATGACCTACATCGGCTACTCCAATGTCTGCGCCGCCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGAC GGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAAT AAACAT TTGGTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGAATAAATTCTTTCTGTGACAGTGGATCTGTTTTTCATACAATGTTATTTTCGTTGCTAATTGCCCTTGCTGTAAAAAAAAAAAAAAAA] [+] EMBL BI796064 [ gcaCTCAAGGAGCCCCACAAGTCCGA GCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGT GGCCGACAGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATGAAACCTCTGGGTGCCATGGTGACATAGTTCTTCC ] consensusID : consensus_10966#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 472 fasta sequence [CCCCCTCCTTCCCATTCCCCATCCCACACCGGCGGCGGCGGCGCGAGCAGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTTCCCTTCTGGCGCGCGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCCGCCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTGGTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACCTGAAACTTGCTGTTATCTGGC-TGGATTTTGTGGTCAACGCTGAAGAATAAATTC-TTTCTGTGACANANNAAAAAAAAANNAANANATNNTANTTTTATTTTTATATATTAAT] [+] EMBL BE040919 [CCCCCTCCTTCCCATTCCCCATCCCACACCGGCGGCGGCGGCGCGAGCAGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTTCCCTTCTGGCGCGCGGCGGGGATGACCTACATCGGCTACTCCAATGTCTGCGCCGCCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTGGTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACCTGAAACTTGCTGTTATCTGGC TGGATTTTGTGGTCAACGCTGAAGAATAAATTC TTTCTGTGACANANNAAAAAAAAANNAANANATNNTANTTTTATTTTTATATATTAAT] [+] EMBL OSC2926A [ TTCCCATTCCCCATCCCACACCGGCGGCGGCGGCGCGAG AGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTTCCCTTCTGGCGCGCGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCCGCCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTGGTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTTGGATTTTGTGGTCAACGCTGAAGAATAAATTCTTTTCTGTGACAAA AAAAAAAAA ] [+] EMBL OSC28951 [ TTCCCATTCCCCATCCCACACCGGCGGCGGCGGCGCGA NAGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTTCCCTTCTGGCGCGCGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCNCCGNCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCGAGGCCGNCTNCCGAGAGAAGGTCCACTTNGCCATCTNCAAGTGGGNCGACGGaa ] [+] EMBL AU063131 [ GGCGCGCGGCGGTGATGACCTACATCGGCTACTCCAACGTCTGCGCCGCCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGAC GAAGGCAGGAGAAGCCTACTGTCCGCACAGATGATGAATAAACATTTTGTNCCATGGTtga ] consensusID : consensus_10966#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [CCAACGTCTGCGCCGCCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCCAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTGGTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGAATAAATTCTTTCTGTGACAGTGGATCTGTTTGTCATACAATGTTATTATCGTTGCTAATTGCCCTTGCTGTACTCGATCAATGATGCGAACT] [+] EMBL CB678836 [CCAACGTCTGCGCCGCCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCCAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTGGTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGAATAAATTCTTTCTGTGACAGTGGATCTGTTTGTCATACAATGTTATTATCGTTGCTAATTGCCCTTGCTGTACTCGATCAATGATGCGAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10966#0 CACTCCTCCTCCTTCCCCATTCCCCCAATCCCACACCGGCGGCGGCGGCGGCGGCGCGAG 60 consensus_10966#2 ------------------------------------------------------------ consensus_10966#1 ------------CCCCCTCCTTCCCATTCCCCATCCCACACCGGCGGCGGCGGCGCGAGC 48 consensus_10966#0 CAGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTTCCTTCTGGCGCG 120 consensus_10966#2 ------------------------------------------------------------ consensus_10966#1 AGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTTCCCTTCTGGCGCG 108 consensus_10966#0 CGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCCGCC-TGGTGCGC--GTGCC 177 consensus_10966#2 ---------------------------CCAACGTCTGCGCCGCCCTGGTGCGCCGGTGCC 33 consensus_10966#1 CGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCCGCCCTGGTGCGCCGGTGCC 168 ***************** ******** ***** consensus_10966#0 TCAAGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCA 237 consensus_10966#2 TCAAGGAGCCCCACAAGTCCCAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCA 93 consensus_10966#1 TCAAGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCA 228 ******************** *************************************** consensus_10966#0 AGTGGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTG 297 consensus_10966#2 AGTGGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTG 153 consensus_10966#1 AGTGGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTG 288 ************************************************************ consensus_10966#0 GTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCG 357 consensus_10966#2 GTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCG 213 consensus_10966#1 GTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCG 348 ************************************************************ consensus_10966#0 AGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGAAT 417 consensus_10966#2 AGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGAAT 273 consensus_10966#1 AGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGAAT 408 ************************************************************ consensus_10966#0 AAATTCTTTCTGTGACAGTGGATCTGTTTTTCATACAATGTTATTTTCGTTGCTAATTGC 477 consensus_10966#2 AAATTCTTTCTGTGACAGTGGATCTGTTTGTCATACAATGTTATTATCGTTGCTAATTGC 333 consensus_10966#1 AAATTCTTTCTGTGACANANNAAAAAAAAANNAANANATNNTANTTTTATTTTTATATAT 468 ***************** * * ** ** * * ** ** * consensus_10966#0 CCTTGCTGTAAAAAAAAAAAAAAAA----- 502 consensus_10966#2 CCTTGCTGTACTCGATCAATGATGCGAACT 363 consensus_10966#1 TAAT-------------------------- 472 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||