cluster # 10969

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Oryza sativa
cluster # 10969 cluster # 10969 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10969#0 length = 702 sequences # 5

consensus_10969#1 length = 614 sequences # 3

consensusID : consensus_10969#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 702
fasta sequence

                              [CTCGTCTCCGCTCCTTGCGCCTGCGCCGATCTCCGTCTCGCGAGCAGAATCCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGTTTTTNAGTCAAGCACATGTCCAAGGCACGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCACAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGGGACATTGGACCTGATTATACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGACTCTTCTT-GGACAGATGATATTGTTAGATTATT-GGGACCTATAAC-TTTGAAGTTGTACTGACATTGTTATGTGTACTGTAGTCAAGGATTGGGCTTCCAGACTTTTGAATGTTCATGCACCCACCCAAGCAGCGCAAAACCAGCAGTGAATAATTATTTCCAGTTGGGACTGTCTTGTCCTGTGCAAGTGCTCTTATGGAGTTTCAAGAATAATTTTAGCACATAGGTTTACTATATATTATCTTTTGTTAGTTCATGGAATTTATTTTAGGGATGTCTAGTGTAGGTGATGCTACGTTTGCGACACCATTACAGTTTCAAACAAAGTGCTGGTTTTCATTTTCTTTTAAAAA]

[+] EMBL AK105123             [CTCGTCTCCGCTCCTTGCGCCTGCGCCGATCTCCGTCTCGCGAGCAGAATCCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGTTTTTGAGTCAAGCACATGTCCAAGGCACGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCACAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGGGACATTGGACCTGATTATACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGACTCTTCTT GGACAGATGATATTGTTAGATTATT GGGACCTATAAC TTTGAAGTTGTACTGACATTGTTATGTGTACTGTAGTCAAGGATTGGGCTTCCAGACTTTTGAATGTTCATGCACCCACCCAAGCAGCGCAAAACCAGCAGTGAATAATTATTTCCAGTTGGGACTGTCT                                                                                                                                                                                  ]
[+] EMBL C29059               [CTCGTCTCCGCTCCTTGCGCCTGCNCCGATCTCCGTCTCGCGAGCAGAATCCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGTTTTTNAGTCAAGCACATGTCCAAGGCACGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCACAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGGGANATTGGACCTGATTATACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGNGGGACTCTTCTTNGGACAGATGATATTGTTAGATTATTGGGGGCCTATAACTTTTGAAGTTGTACTGNCAT                                                                                                                                                                                                                                                                                                 ]
[+] EMBL C97104               [CTCGTCTCCGCTCCTTGCGCCTGCGCCGATCTCCGTCTCGCGAGCAGAATCCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGTTTTTNAGTCAAGCACATGTCCAAGGCACGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCACAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGNGGGACATTGGAC                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU160854             [                                                                                                                                                                                                                                                                                                                  GACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGACTCTTCTT GGACAGATGATATTGTTAGATTATT GGGACCTATAAC TTTGAAGTTGTACTGACATTGTTATGTGTACTGTAGTCAAGGATTGGGCTTCCAGACTTTTGAATGTTCATGCACCCACCCAAGCAGCGCAAAACCAGCAGTGAATAATTATTTCCAGTTGGGACTGTCTTGTCCTGTGCAAGTGCTCTTATGGAGTTTCAAGAATAATTTTAGCACATAGGTTTACTATATATTATCTTTTGTTAGTTCATGGAATTTATTTTAGGGATGTCTAGTGTAGGTGATGCTACGTTTGCGACACCATTACAGTTTCAAACAAAGTGCTGGTTTTCATTTTCTTTTAAAAA]
[+] EMBL AA750203             [                                                                                                                                                                                                                                                                                                                                                                                                                GAAGTTGTACTGACATTGTTATGTGTACTGTAGTCAAGGATTGGGCTTCCAGACTTTTGAATGTTCATGCACCCACCCAAGCAGCGCAAAACCAGCAGTGAATAATTATTTCCAGTTGGGACTGTCTTGTCCTGTGCAAGTGCTCTTATGGAGTTTCAA                                                                                                                                                  ]




>consensus_10969#0
CTCGTCTCCGCTCCTTGCGCCTGCGCCGATCTCCGTCTCGCGAGCAGAATCCAGAGCAAG
GGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGTTTTTNAGTCAAGCACATGTCCAAG
GCACGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTT
CCATTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCT
CCACAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGGGACATTGGACCTGAT
TATACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGACTCTTCTTGGA
CAGATGATATTGTTAGATTATTGGGACCTATAACTTTGAAGTTGTACTGACATTGTTATG
TGTACTGTAGTCAAGGATTGGGCTTCCAGACTTTTGAATGTTCATGCACCCACCCAAGCA
GCGCAAAACCAGCAGTGAATAATTATTTCCAGTTGGGACTGTCTTGTCCTGTGCAAGTGC
TCTTATGGAGTTTCAAGAATAATTTTAGCACATAGGTTTACTATATATTATCTTTTGTTA
GTTCATGGAATTTATTTTAGGGATGTCTAGTGTAGGTGATGCTACGTTTGCGACACCATT
ACAGTTTCAAACAAAGTGCTGGTTTTCATTTTCTTTTAAAAA

consensusID : consensus_10969#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 614
fasta sequence

                              [AAACTCCCGTCTCGTCTCCGCTCCTTGCGCCTGC-CGNA-TCTCCG-TCTCGCGAGCAGAATCCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGAATTACTTGCGAATGGATGGCATAGATATAGTATTTTCACTGCTAGGTTTTTGAGTCAAGCACATGTCCAAGGCACGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCACAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGGGACATTGGACCTGATTATACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGANTCT-TCTTGGACAGATGATATTGTTAGANTATTGGGGACCTATAACTTTGAAGTTGTAC-TGACATTGTTATGTGTACTGNA-GTCAA-GGATTGGGGCTTCCAGANTTTTGGAATGGTCATGCACCCA-CCCNAGCAGCGCAAAAACCAGCAGTGAATAATTATTTTCCAGTTNGGGNCTNTCTTTGTCCTGTGCAAGGTGCAAAAAAAAAA]

[+] EMBL OSC9151              [AAACTCCCGTCTCGTCTCCGCTCCTTGCGCCTGC CGNANTCTCCG TCTCGCGAGCAGAATCCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGAATTACTTGCGAATGGATGGCATAGATATAGTATTTTCACTGCTAGGTTTTTGAGTCAAGCACATGTCCAAGGCACGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGANCAAACCCATCATTGATTCATCAAAGCCTCTACCTCCACAGGCTACATTTCGAGGACCATATGTGAATACTTGATCGCGGG CATTGG NCTGATTATACCG CTA CCCAAGAAGTGATCTATCTATCC AAAATCAGAGGG   CTNTCTTGG CAGATGATATTG TAGA TATTGGGacnat                                                                                                                                                                            ]
[+] EMBL AU032911             [  ACTCCCGTCTCGTCTCNGCTACTTGCGCCTGCGCCGA TCTCCGTTCTCGCGAGCAGAATCCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGAATTACTTGCGAATGGATGGCATAGATATAGTATTTTCACTGCTAGGTTTTTGAGTCAAGCACATGTCCAAGGCANGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTAACTCCACAGG TACATTTCGAGGACCATATGTGAATACTGGATCGCGGGACATTGGACCTGATTATACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGANTCT TCTTGGANAGATGATATTGTTAGANTATTGGGGACCTATAACTTTGAAGTTGTAC TGACATTGTTATGTGTACTGNA GTCAA GGATTGGGGCTTCCAGANTTTTGGAATGGTCATGCACCCA CCCNAGCAGCGCAAAAACCAGCAGTGAATAATTA                                                 ]
[+] EMBL AU161206             [                                                                                                                                                                                AAGGCACGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCACAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGGGACATTGGACCTGATTATACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGACTCT TCTTGGACAGATGATATTGTTAGATTATT GGGACCTATAACTTTGAAGTTGTACTTGACATTGTTATGTGTACTGTAGGTCAAGGGATTGGGGCTTCCAGACTTTT GAATGTTCATGCACCCACCCCAAGCAGCGC AAAACCAGCAGTGAATAATTATTTTCCAGTTNGGGNCTNTCTTTGTCCTGTGCAAGGTGCAAAAAAAAAA]




>consensus_10969#1
AAACTCCCGTCTCGTCTCCGCTCCTTGCGCCTGCCGNATCTCCGTCTCGCGAGCAGAATC
CAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGAATTACTTGCGAATGG
ATGGCATAGATATAGTATTTTCACTGCTAGGTTTTTGAGTCAAGCACATGTCCAAGGCAC
GGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCAT
TCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCAC
AGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGGGACATTGGACCTGATTATA
CCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGANTCTTCTTGGACAGA
TGATATTGTTAGANTATTGGGGACCTATAACTTTGAAGTTGTACTGACATTGTTATGTGT
ACTGNAGTCAAGGATTGGGGCTTCCAGANTTTTGGAATGGTCATGCACCCACCCNAGCAG
CGCAAAAACCAGCAGTGAATAATTATTTTCCAGTTNGGGNCTNTCTTTGTCCTGTGCAAG
GTGCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10969#0      ----------CTCGTCTCCGCTCCTTGCGCCTGCGCCGATCTCCGTCTCGCGAGCAGAAT 50
consensus_10969#1      AAACTCCCGTCTCGTCTCCGCTCCTTGCGCCTGC-CGNATCTCCGTCTCGCGAGCAGAAT 59
                                 ************************ *  **********************

consensus_10969#0      CCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGG--------------- 95
consensus_10969#1      CCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGAATTACTTGCGAATG 119
                       *********************************************               

consensus_10969#0      --------------------------------TTTTTNAGTCAAGCACATGTCCAAGGCA 123
consensus_10969#1      GATGGCATAGATATAGTATTTTCACTGCTAGGTTTTTGAGTCAAGCACATGTCCAAGGCA 179
                                                       ***** **********************

consensus_10969#0      CGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCA 183
consensus_10969#1      CGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCA 239
                       ************************************************************

consensus_10969#0      TTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCA 243
consensus_10969#1      TTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCA 299
                       ************************************************************

consensus_10969#0      CAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGGGACATTGGACCTGATTAT 303
consensus_10969#1      CAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGGGACATTGGACCTGATTAT 359
                       ************************************************************

consensus_10969#0      ACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGACTCTTCTTGGACAG 363
consensus_10969#1      ACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGANTCTTCTTGGACAG 419
                       ********************************************** *************

consensus_10969#0      ATGATATTGTTAGATTATTGGG-ACCTATAACTTTGAAGTTGTACTGACATTGTTATGTG 422
consensus_10969#1      ATGATATTGTTAGANTATTGGGGACCTATAACTTTGAAGTTGTACTGACATTGTTATGTG 479
                       ************** ******* *************************************

consensus_10969#0      TACTGTAGTCAAGGATTGGG-CTTCCAGACTTTTG-AATGTTCATGCACCCACCCAAGCA 480
consensus_10969#1      TACTGNAGTCAAGGATTGGGGCTTCCAGANTTTTGGAATGGTCATGCACCCACCCNAGCA 539
                       ***** ************** ******** ***** **** ************** ****

consensus_10969#0      GCGCAAAA-CCAGCAGTGAATAATTATTT-CCAGTTGGG-ACTGTCTT-GTCCTGTGCAA 536
consensus_10969#1      GCGCAAAAACCAGCAGTGAATAATTATTTTCCAGTTNGGGNCTNTCTTTGTCCTGTGCAA 599
                       ******** ******************** ****** **  ** **** ***********

consensus_10969#0      G-TGCTCTTATGGAGTTTCAAGAATAATTTTAGCACATAGGTTTACTATATATTATCTTT 595
consensus_10969#1      GGTGCAAAAAAAAAA--------------------------------------------- 614
                       * ***    *   *                                              

consensus_10969#0      TGTTAGTTCATGGAATTTATTTTAGGGATGTCTAGTGTAGGTGATGCTACGTTTGCGACA 655
consensus_10969#1      ------------------------------------------------------------
                                                                                   

consensus_10969#0      CCATTACAGTTTCAAACAAAGTGCTGGTTTTCATTTTCTTTTAAAAA 702
consensus_10969#1      -----------------------------------------------