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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10972#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1070 fasta sequence
[ATCTCGCCGCCGTCCACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTCGCCCCGCTCTGCGACGACCTCTTCCTCCAGGCCGCGTCCCGGGGCGCCGCCACCGACGGCTGGCCCTACGCCGTGCACCTCCTCGCCCACCTCTACCTCAACGACCTGAACAGCGCGAGGTTTCTGTGGAAGTCGACGCCGCAGGAGGCGAAGGACGCGCGGCCGGAGCTCGCCGCCGTCTGGAGGATCGGGCAGTGCCTCTGGAACCGCGATTACGCGGGCGTCTACGCGGCCGCGCAGGGGTTCGAGTGGAGCCCTGAAATCGCCGACTTCGTGGCCGCCTTCCTAGAAAGCTACAGAAAGAGGATTTTCCAGTTGTTGACTTCTGCATATTCCACAATCAGCGTTGCTGATGTGGCTCACTTCATGGGGATGAATGAGGAGGATGCTACTAACTATGCCATGCAAAACGGTTGGAGCTTGGATGCGGCAGCCAGGATGCTTACTGTCGTAAAACCAAAGGTTAAGACTAACCAGAAGCTCGATGCAAGCAAACTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCCAGCATTACGGGCATCCCGCATGACTCTTAAGAAACCTATTTATCATATGATGCCAAGCCGAGATTGCCTTTTCTCCGGAAATCAGAGTTAGTTCAGTGTTGAATTTCCATCTGCAATTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATGGTTGCTTGTTGATATGGTTGGT-GGT-GGTTCTTGCCAGACTTACACTGAAGTAAATGACACTGCTTAGTGTCAACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAAATTGTTTCCCGTTTTACAGAAAGTCACTGTTAGTGTTGTTCTTGATTTGNTGTGGCCTTTATGCTTGTGCTTCATTAGCTGCATAGCTGCCAATTGGGCATCTATTGTCTGGATTTTAATGGAGATTGGTATCCTAGACAAAACCTGGTAGTTGTAATGCGTACATTACTGTACGCCGTATGCTTGGTAGNATCNTTTTGATAAAGGGATT]
[+] EMBL AK061355 [ATCTCGCCGCCGTCCACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTCGCCCCGCTCTGCGACGACCTCTTCCTCCAGGCCGCGTCCCGGGGCGCCGCCACCGACGGCTGGCCCTACGCCGTGCACCTCCTCGCCCACCTCTACCTCAACGACCTGAACAGCGCGAGGTTTCTGTGGAAGTCGACGCCGCAGGAGGCGAAGGACGCGCGGCCGGAGCTCGCCGCCGTCTGGAGGATCGGGCAGTGCCTCTGGAACCGCGATTACGCGGGCGTCTACGCGGCCGCGCAGGGGTTCGAGTGGAGCCCTGAAATCGCCGACTTCGTGGCCGCCTTCCTAGAAAGCTACAGAAAGAGGATTTTCCAGTTGTTGACTTCTGCATATTCCACAATCAGCGTTGCTGATGTGGCTCACTTCATGGGGATGAATGAGGAGGATGCTACTAACTATGCCATGCAAAACGGTTGGAGCTTGGATGCGGCAGCCAGGATGCTTACTGTCGTAAAACCAAAGGTTAAGACTAACCAGAAGCTCGATGCAAGCAAACTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCCAGCATTACGGGCATCCCGCATGACTCTTAAGAAACCTATTTATCATATGATGCCAAGCCGAGATTGCCTTTTCTCCGGAAATCAGAGTTAGTTCAGTGTTGAATTTCCATCTGCAATTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATGGTTGCTTGTTGATATGGTTGGT GGT GGTTCTTGCCAGACTTACACTGAAGTAAATGACACTGCTTAGTGTCAACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAAATTGTTTCC ]
[+] EMBL AK099153 [ATCTCGCCGCCGTCCACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTCGCCCCGCTCTGCGACGACCTCTTCCTCCAGGCCGCGTCCCGGGGCGCCGCCACCGACGGCTGGCCCTACGCCGTGCACCTCCTCGCCCACCTCTACCTCAACGACCTGAACAGCGCGAGGTTTCTGTGGAAGTCGACGCCGCAGGAGGCGAAGGACGCGCGGCCGGAGCTCGCCGCCGTCTGGAGGATCGGGCAGTGCCTCTGGAACCGCGATTACGCGGGCGTCTACGCGGCCGCGCAGGGGTTCGAGTGGAGCCCTGAAATCGCCGACTTCGTGGCCGCCTTCCTAGAAAGCTACAGAAAGAGGATTTTCCAGTTGTTGACTTCTGCATATTCCACAATCAGCGTTGCTGATGTGGCTCACTTCATGGGGATGAATGAGGAGGATGCTACTAACTATGCCATGCAAAACGGTTGGAGCTTGGATGCGGCAGCCAGGATGCTTACTGTCGTAAAACCAAAGGTTAAGACTAACCAGAAGCTCGATGCAAGCAAACTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCCAGCATTACGGGCATCCCGCATGACTCTTAAGAAACCTATTTATCATATGATGCCAAGCCGAGATTGCCTTTTCTCCGGAAATCAGAGTTAGTTCAGTGTTGAATTTCCATCTGCAATTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATGGTTGCTTGTTGATATGGTTGGT GGT GGTTCTTGCCAGACTTACACTGAAGTAAATGACACTGCTTAGTGTCAACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAAATTGTTT ]
[+] EMBL CA765074 [ GAAATCGCCGACTTCGTGGCCGCCTTCCTAGAAAGCTACAGAAAGAGGATTTTCCAGTTGTTGACTTCTGCATATTCCACAATCAGCGTTGCTGATGTGGCTCACTTCATGGGGATGAATGAGGAGGATGCTACTAACTATGCCATGCAAAACGGTTGGAGCTTGGATGCGGCAGCCAGGATGCTTACTGTCGTAAAACCAAAGGTTAAGACTAACCAGAAGCTCGATGCAAGCAAACTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCCAGCATTACGGGCATCCCGCATGACTCTTAAGAAACCTATTTATCATATGATGCCAAGCCGAGATTGCCTTTTCTCCGGAAATCAGAGTTAGTTCAGTGTTGAATTTCCATCTGCAATTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATGGTTGCTTGTTGATATGGTTGGTGGGTGGGTTCTTGCCAGACTTACACTGAAGTAAATGACACTGCTTAGTGTCAACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAAATTGTTTCCCGTTTTACAGAAAGTCACTGTTAGTGTTGTTCTTGATTTGNTGTGGCCTTTATGCTTGTGCTTCATTAGCTGCATAGCTGCCAATTGGGCATCTATTGTCTGGATTTTAATGGAGATTGGTATCCTAGACAAAACCTGGTAGTTGTAATGCGTACATTACTGTACGCCGTATGCTTGGTAGNATCNTTTTGATAAAGGGATT]
[+] EMBL CB000290 [ CAAACTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCCAGCATTACGGGCATCCCGCATGACTCTTAAGAAACCTATTTATCATATGATGCCAAGCCGAGATTGCAATTTTTTTTTATATCAGAGTTATTTTTGTGTTGAATTTCCATCTGCAATTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATGGTTGCTTGTTGATATGGTTGGT GGT GGTTCTTGCCAGACTTACACTGAAGTAAATGACACTGCTTAGTGTCAACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAAATTGTTTCCCGTTTTACAGAAAaaaaa ]
consensusID : consensus_10972#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 536 fasta sequence
[ATCTCGCCGCCGTCCACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTCGCCCCGCTCTGCGACGACCTCTTCCTCCAGGCCGCGTCCCGGGGCGCCGCCACCGACGGCTGGCCCTACGCCGTGCACCTCCTCGCCCACCTCTACCTCAACGACCTGAACAGCGCGAGGTTTCTGTGGAAGTCGACGCCGCAGGAGGCGAAGGACGCGCGGCCGGAGCTCGCCGCCGTCTGGAGGATCGGGCAGTGCCTCTGGAACCGCGATTACGCGGGCGTCTACGCGGCCGCGCAGGGGTTCGAGTGGAGCCCTGAAATCGCCGACTTCGTGGCCGCCTTCCTAGGTCACCACTTTGTGGTGTGGGTTGGGAAGTCGGGAGATTCAGATGTGCATACATATACTTCATGGAGTAATTGTGGAAACGATTTATCTGCACAATCAGGCTGAATCAGCTTCCTTAATGAATACGCAAAGTTACTATTAGTAGAGTGCCCGTTAGTAGAGTTTTGTGCTGCGTAGTGTAATGGTTAAAGTGTTTAT]
[+] EMBL AY336991 [ATCTCGCCGCCGTCCACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTCGCCCCGCTCTGCGACGACCTCTTCCTCCAGGCCGCGTCCCGGGGCGCCGCCACCGACGGCTGGCCCTACGCCGTGCACCTCCTCGCCCACCTCTACCTCAACGACCTGAACAGCGCGAGGTTTCTGTGGAAGTCGACGCCGCAGGAGGCGAAGGACGCGCGGCCGGAGCTCGCCGCCGTCTGGAGGATCGGGCAGTGCCTCTGGAACCGCGATTACGCGGGCGTCTACGCGGCCGCGCAGGGGTTCGAGTGGAGCCCTGAAATCGCCGACTTCGTGGCCGCCTTCCTAGGTCACCACTTTGTGGTGTGGGTTGGGAAGTCGGGAGATTCAGATGTGCATACATATACTTCATGGAGTAATTGTGGAAACGATTTATCTGCACAATCAGGCTGAATCAGCTTCCTTAATGAATACGCAAAGTTACTATTAGTAGAGTGCCCGTTAGTAGAGTTTTGTGCTGCGTAGTGTAATGGTTAAAGTGTTTAT]
[+] EMBL AU163964 [ATCTCGCCGCCGTCCACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTCGCCCCGCTCTGCGACGACCTCTTCCTCCAGGCCGCGTCCCGGGGCGCCGCCACCGACGGCTGGCCCTACGCCGTGCACCTCCTCGCCCACCTCTACCTCAACGACCTGAACAGCGCGAGGTTTCTGTGGAAGTCGACGCCGCAGGAGGCGAAGGACGCGCGGCCGGAGCTCGCCGCCGTCTGGAGGATCGGGCAGTGCCTCTGGAACCGCGATTACGC ]
[+] EMBL OSC1611 [ATCTCGCCGCCGTCCACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTCGCCCCGCTCTG GACGACCTCTTCCTCCAGGCCGCGTCCCGGGGCGCCG CACCGACGGCTGGCCCTACGCCGTGCACCTCCTCGCCCACCTCTACCTCAACGANCTGAACAGCGCGAGGTTTCTGTGGAAGTCGACGCCG AAGAGGGAAAGGACGCGNGGCCGGAGCTCGCCGCCGTCTTGAGGATCGGGAAGTG ]
consensusID : consensus_10972#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence
[TTCAGAACCTGATACATAGTTGTCTTAATAATCATTACAGATCCATCCAAACGGTTGGAGCTTGGATGCGCAGCCAGGATGCTTACTGTCGTAAAACCAAGGTTAAGACTAACCAGAAGCTCGATGCAAGCAACTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCCAGCATTACGGGCATCCCGCATGACTCTTAAGAAACCTATTTATCATATGATGCCAAGCCGAGATTGCCTTTTCTCCGGAAATCAGAGTTAGTTCAGTGTTGAATTTCCATCTGCATTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATGGTTGCTTGTTGATATGGTTGGTGGTGGTTCTTGCCAGACTTACACTGAAGTAAATGACACTGCTTAGTGTCAACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAAATTGTTTCCCGTTTTACAGAAAGTCACTGTTAGTGTTGTTCTTGATTAAAAAAAAAA]
[+] EMBL BI813306 [TTCAGAACCTGATACATAGTTGTCTTAATAATCATTACAGATCCATCCAAACGGTTGGAGCTTGGATGCGCAGCCAGGATGCTTACTGTCGTAAAACCAAGGTTAAGACTAACCAGAAGCTCGATGCAAGCAACTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCCAGCATTACGGGCATCCCGCATGACTCTTAAGAAACCTATTTATCATATGATGCCAAGCCGAGATTGCCTTTTCTCCGGAAATCAGAGTTAGTTCAGTGTTGAATTTCCATCTGCATTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATGGTTGCTTGTTGATATGGTTGGTGGTGGTTCTTGCCAGACTTACACTGAAGTAAATGACACTGCTTAGTGTCAACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAAATTGTTTCCCGTTTTACAGAAAGTCACTGTTAGTGTTGTTCTTGATTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10972#0 ATCTCGCCGCCGTCCACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTCGCCCCGCTCT 60
consensus_10972#2 ------------------------------------------------------------
consensus_10972#1 ------------------------------------------------------------
consensus_10972#0 GCGACGACCTCTTCCTCCAGGCCGCGTCCCGGGGCGCCGCCACCGACGGCTGGCCCTACG 120
consensus_10972#2 ------------------------------------------------------------
consensus_10972#1 ------------------------------------------------------------
consensus_10972#0 CCGTGCACCTCCTCGCCCACCTCTACCTCAACGACCTGAACAGCGCGAGGTTTCTGTGGA 180
consensus_10972#2 ------------------------------------------------------------
consensus_10972#1 ------------------------------------------------------------
consensus_10972#0 AGTCGACGCCGCAGGAGGCGAAGGACGCGCGGCCGGAGCTCGCCGCCGTCTGGAGGATCG 240
consensus_10972#2 ------------------------------------------------------------
consensus_10972#1 ------------------------------------------------------------
consensus_10972#0 GGCAGTGCCTCTGGAACCGCGATTACGCGGGCGTCTACGCGGCCGCGCAGGGGTTCGAGT 300
consensus_10972#2 ------------------------------------------------------------
consensus_10972#1 ------------------------------------------------------------
consensus_10972#0 GGAGCCCTGAAATCGCCGACTTCGTGGCCGCCTTCCTAGAAAGCTACAGAAAGAGGATTT 360
consensus_10972#2 ------------------------------------------------------------
consensus_10972#1 ------------------------------------------------------------
consensus_10972#0 TCCAGTTGTTGACTTCTGCATATTCCACAATCAGCGTTGCTGATGTGGCTCACTTCATGG 420
consensus_10972#2 ------------------------------------------------TTCAGAACCTGA 12
consensus_10972#1 ----------------------------------------------ATCTCGCCGCCGTC 14
** *
consensus_10972#0 GGATGAATGAGG-AGGATGCTACTAACTATGCCATGCAAAACGGTTGGAGCTTGGATGCG 479
consensus_10972#2 TACATAGTTGTC-TTAATAATCATTACAGATCCATCCAAA-CGGTTGGAGCTTGGATGCG 70
consensus_10972#1 CACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTC--GCCCCGCTCTGCGACGACCTCT 72
** ** * * * * * *
consensus_10972#0 GCAGCCAGGATGCTTACTGTCGTAAAACCA---AAGGTTAAGACTA-ACCA-GAAGCTCG 534
consensus_10972#2 -CAGCCAGGATGCTTACTGTCGTAAAACCA---A-GGTTAAGACTA-ACCA-GAAGCTCG 123
consensus_10972#1 TCCTCCAGGCCGCGTCCCGGGGCGCCGCCACCGACGGCTGGCCCTACGCCGTGCACCTCC 132
* ***** ** * * * * *** * ** * *** ** * * ***
consensus_10972#0 ATGCAAGCAAA--CTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCC 592
consensus_10972#2 ATGCAAGCAA---CTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCC 180
consensus_10972#1 TCGCCCACCTCTACCTCAACGACCTGAACAGCGCGAGGTTTCTGTGGAAGTCGACGCCGC 192
** * * *** *** * *** * **** * * *
consensus_10972#0 AGCA--TTACGGGCATCCCGCATGA-CTCTTAAGAAACCTATTTATCATATGATGCCAAG 649
consensus_10972#2 AGCA--TTACGGGCATCCCGCATGA-CTCTTAAGAAACCTATTTATCATATGATGCCAAG 237
consensus_10972#1 AGGAGGCGAAGGACGCGCGGCCGGAGCTCGCCGCCGTCTGGAGGATCGGGCAGTGCC--T 250
** * * ** * * ** ** *** * *** ****
consensus_10972#0 CCGAGATTGCCTTTTCTCCGGAAATCA-GAGTTAGTTCAGTG--TTGAATTTCCATCTGC 706
consensus_10972#2 CCGAGATTGCCTTTTCTCCGGAAATCA-GAGTTAGTTCAGTG--TTGAATTTCCATCTGC 294
consensus_10972#1 CTGGAACCGCGATTACGCGGGCGTCTACGCGGCCGCGCAGGGGTTCGAGTGGAGCCCTGA 310
* * * ** ** * * ** * * * * *** * * ** * ***
consensus_10972#0 AATTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATG-GTTGCTTGTTGATATGGT 765
consensus_10972#2 A-TTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATG-GTTGCTTGTTGATATGGT 352
consensus_10972#1 AATCGCCGACTTCGTGGCCGCCTTCCTAGGTCACCACTTTGTGGTGTGGGTTGGGAAGTC 370
* * * ** * ** **** ** * ** * ** **** * *
consensus_10972#0 TGGTGGTGGTTCTTGCCAGACTTACACT----GAAGTAA--ATGACACTGCTTAGTGTCA 819
consensus_10972#2 TGGTGGTGGTTCTTGCCAGACTTACACT----GAAGTAA--ATGACACTGCTTAGTGTCA 406
consensus_10972#1 GGGAGATTCAGATGTGCATACATATACTTCATGGAGTAATTGTGGAAACGATTTATCTGC 430
** * * * ** ** ** *** * ***** ** * * ** * *
consensus_10972#0 ACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAA--ATTGTTTCCCGTTTTACA 877
consensus_10972#2 ACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAA--ATTGTTTCCCGTTTTACA 464
consensus_10972#1 ACAATCAGGCTGAATCAGCTTCCTTAATGAATACGCAAAGTTACTATTAGTAGAGTGCCC 490
** * * * * * ** * ** * * ** * * ** * * *
consensus_10972#0 GAAAGTCACTGTTAGTGTTGTTCTTGATTTGNTGTGGCCTTTATGCTTGTGCTTCATTAG 937
consensus_10972#2 GAAAGTCACTGTTAGTGTTGTTCTTGATTAAAAAAAAAA--------------------- 503
consensus_10972#1 GTTAGTAGAGTTTTGTGCTGCGTAGTGTAATGGTTAAAGTGTTTAT-------------- 536
* *** ** *** ** *
consensus_10972#0 CTGCATAGCTGCCAATTGGGCATCTATTGTCTGGATTTTAATGGAGATTGGTATCCTAGA 997
consensus_10972#2 ------------------------------------------------------------
consensus_10972#1 ------------------------------------------------------------
consensus_10972#0 CAAAACCTGGTAGTTGTAATGCGTACATTACTGTACGCCGTATGCTTGGTAGNATCNTTT 1057
consensus_10972#2 ------------------------------------------------------------
consensus_10972#1 ------------------------------------------------------------
consensus_10972#0 TGATAAAGGGATT 1070
consensus_10972#2 -------------
consensus_10972#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||