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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1419 fasta sequence
[TCGTCGCCCCCGCAATTTCGCGGTCTCCTCCTCCTCCTCCTCCCCTCGTCTCCACCTCCCAATCCGGCGATTCCCCAATCCTCCACCACCTCCTCACCCACCCCCCCGACGACCACCTCCCCCACCTCGCCCAACCACGCGGCAGAAGCAAGTCAAGCCAAGCCGTACGGCACCCCACCCCCACCCCGCGCAATGCCGGGCCTCGCCGCCGACCAGGACACCGTCTCGCTGGTGCGCCGCGTCTCCCGCGCCCTCAACCGCCGCCTCACCGACCTCGTCGGCCTCCTCTTCCACCACAAGAGCGCCGGATCCCTCGGGGCCGTCGCCGGGTTCGCCATCGCTGTCGTGTTCGCGTGGAAGTTCCTGCGGTCGTCGCCGGCCAGGCCGCGCCGCCCCCCCGGACCGAAGCGGCCGCTCGTCGGCCCTGCTGCCCCCGATTCCGCCGCTCGCGATGCGGCCGAGCCTGCCAATCCTGGGAAGCTGACGACACGGCAAATCGTGGTGAAGCGACTGGGCGGGTGTAGAAAGGTGACTTGCCAACTGCTTGGTGTTGTCTTTGAGGAGATAACTCCTCAGGAGCTTCAGACACATGCCACTGTTAGACCTTCAGTGGTGGAACTACTACTCGAAATAGCCAAATACTGTGATTTGTATCTGATGGAAACTGTACTTGATGATAAGAGTGAGGAGAATGCTCTATTGGCCCTGGAGAGTGCTGGACTTTTCAAGACTGGTGGCTTGATGAAAGAAAAGGTACTCTTCTGCAGCTCTGAAGTTGGGCGAACTTCATTTGTTCGACAGTTAGAGGCAGATTTTCACATTGACACAAGCCTCGATATAATTTCCCAACTATCTCGGTTCATTCGGTGCCAACTCTTTGTTTCCTCAATAGAAGGAGGACAACTTGCGGGTAATGTATTTAACTCTCCAAGCCTTGAGCAGTTCTTCTCATGAAACCAGAGCATAATGGGGGTTCGTATCTAAACGTGGCGACTACAGCAGCACGTGTTTCAAGCTTTGAAGGTGTCATGTGATTCTGTGACACCAATCTAGTAGTAGAATCCTCAGGTACATAATGGAGGCATATGCGGTTGGCACATATGTTGTGTGCTATGTTGTGCCTGTTGTTCCCATCTTTCTCATAGCTGTATCTTAGCCTCATAGATAGCGAGAACTATAAGTTGGATGAGTGCAGTTCATGGCCATCTAATGGTGTTGTAAAATGTAAATTGAATGCCACAAGTC-TTTTTTTTTTTGGGTTTATTAGTTTCTGTAGCTTTCATTCCATGACGAGCGAACTAGTACCTCTATCGCAATAGAAGCAACTGTAGCTGATGATTCCGGTAATCCGGTTTACTTTCGACTGAATGCTGGATGGAAATTGCTCCTCAAGCTGAGGGAATTAAAAAAAAAAAAACA]
[+] EMBL AK068413 [TCGTCGCCCCCGCAATTTCGCGGTCTCCTCCTCCTCCTCCTCCCCTCGTCTCCACCTCCCAATCCGGCGATTCCCCAATCCTCCACCACCTCCTCACCCACCCCCCCGACGACCACCTCCCCCACCTCGCCCAACCACGCGGCAGAAGCAAGTCAAGCCAAGCCGTACGGCACCCCACCCCCACCCCGCGCAATGCCGGGCCTCGCCGCCGACCAGGACACCGTCTCGCTGGTGCGCCGCGTCTCCCGCGCCCTCAACCGCCGCCTCACCGACCTCGTCGGCCTCCTCTTCCACCACAAGAGCGCCGGATCCCTCGGGGCCGTCGCCGGGTTCGCCATCGCTGTCGTGTTCGCGTGGAAGTTCCTGCGGTCGTCGCCGGCCAGGCCGCGCCGCCCCCCCGGACCGAAGCGGCCGCTCGTCGGCCCTGCTGCCCCCGATTCCGCCGCTCGCGATGCGGCCGAGCCTGCCAATCCTGGGAAGCTGACGACACGGCAAATCGTGGTGAAGCGACTGGGCGGGTGTAGAAAGGTGACTTGCCAACTGCTTGGTGTTGTCTTTGAGGAGATAACTCCTCAGGAGCTTCAGACACATGCCACTGTTAGACCTTCAGTGGTGGAACTACTACTCGAAATAGCCAAATACTGTGATTTGTATCTGATGGAAACTGTACTTGATGATAAGAGTGAGGAGAATGCTCTATTGGCCCTGGAGAGTGCTGGACTTTTCAAGACTGGTGGCTTGATGAAAGAAAAGGTACTCTTCTGCAGCTCTGAAGTTGGGCGAACTTCATTTGTTCGACAGTTAGAGGCAGATTTTCACATTGACACAAGCCTCGATATAATTTCCCAACTATCTCGGTTCATTCGGTGCCAACTCTTTGTTTCCTCAATAGAAGGAGGACAACTTGCGGGTAATGTATTTAACTCTCCAAGCCTTGAGCAGTTCTTCTCATGAAACCAGAGCATAATGGGGGTTCGTATCTAAACGTGGCGACTACAGCAGCACGTGTTTCAAGCTTTGAAGGTGTCATGTGATTCTGTGACACCAATCTAGTAGTAGAATCCTCAGGTACATAATGGAGGCATATGCGGTTGGCACATATGTTGTGTGCTATGTTGTGCCTGTTGTTCCCATCTTTCTCATAGCTGTATCTTAGCCTCATAGATAGCGAGAACTATAAGTTGGATGAGTGCAGTTCATGGCCATCTAATGGTGTTGTAAAATGTAAATTGAATGCCACAAGTC TTTTTTTTTTTGGGTTTATTAGTTTCTGTAGCTTTCATTCCATGACGAGCGAACTAGTACCTCTATCGCAATAGAAGCAACTGTAGCTG ]
[+] EMBL CB663281 [ ACCTCCCCCACCTCGCCCAACCACGCGGCAGAAGCAAGTCAAGCCAAGCCGTACGGCACCCCACCCCCACCCCGCGCAATGCCGGGCCTCGCCGCCGACCAGGACACCGTCTCGCTGGTGCGCCGCGTCTCCCGCGCCCTCAACCGCCGCCTCACCGACCTCGTCGGCCTCCTCTTCCACCACAAGAGCGCCGGATCCCTCGGGGCCGTCGCCGGGTTCGCCATCGCTGTCGTGTTCGCGTGGAAGTTCCTGCGGTCGTCGCCGGCCAGGCCGCGCCGCCCCCCCGGACCGAAGCGGCCGCTCGTCGGCCCTGCTGCCCCCGATTCCGCCGCTCGCGATGCGGCCGAGCCTGCCAATCCTGGGAAGCTGACGACACGGCAAATCGTGGTGAAGCGACTGGGCGGGTGTAGAAAGGTGACTTGCCAACTGCTTGGTGTTGTCTTTGAGGAGATAACTCCTCAGGAGCTTCAGACACATGCCACTGTTAGACCTTCAGTGGTGGAACTACTACTCGAAATAGCCAAATACTGTGATTTGTATCTGATGGAAACTGTACTTGATGATAAGAGTGAGGAGAATGCTCTATTGGCCCTGGAGAGTGCTGGACTTTTCAAGACTGGTGGCTTGATGAAAGAAAAGGTACTCTTCTGCAGCTCTGAAGTTGGGCGAACTTCATTTGTTCGACAGTTAGAGGCAGATTTTCACATTGACACAAGCCTCGATATAATTTCCCAACTATCTCGGTTCATTCGGTGCCAACTCTTTGTTTCCTCAATAGAAAGAGGACAACTTGCGGGTAATGTA ]
[+] EMBL AU069932 [ CTGCTGCCCCCGATTCCGCCGCTCGCGATGCGGCCGAGCCTGCCAATCCTGGGAAGCTGACGACACGGCAAATCGTGGTGAAGCGACTGGGCGGGTGTAGAAAGGTGACTTGCCAACTGCTTGGTGTTGTCTTTGAGGAGATAACTCCTCAGGAGCTTCAGACACATGCCACTGTTAGACCTTCAGTGGTGGAACTACTACTCGAAATAGCCAAATACTGTGATTTGTATCTGATGGAAACTGTACTTGATGATAAGAGTGAGGAGAATGCTCTATTGGCCCTGGAGAGTGCTGGACTTTTCAAGACTGGTGGCTTGATGAAAGAAAAGGTACTCTTCTGCAGCTCTGAAGTTGGGCGAACTTCATTTGTTCGACAGTTAGAGGCAGATTTTCACATTGACACAAGCCTCGATATAATTTCCCAACTATCTCGGTTCATTCGGTGCCAACTCTTTGTTTCCTCAATAGAAGGAGGACAACTTGCGGGTAATGTATTTAACTCTCCAAGCCTTGAGCAGTTCTTCTCATGAAACCAGA ]
[-] EMBL CB663282 [ ACTTGATGATAAGAGTGAGGAGAATGCTCTATTGGCCCTGGAGAGTGCTGGACTTTTCAAGACTGGTGGCTTGATGAAAGAAAAGGTACTCTTCTGCAGCTCTGAAGTTGGGCGAACTTCATTTGTTCGACAGTTAGAGGCAGATTTTCACATTGACACAAGCCTCGATATAATTTCCCAACTATCTCGGTTCATTCGGTGCCAACTCTTTGTTTCCTCAATAGAAGGAGGACAACTTGCGGGTAATGTATTTAACTCTCCAAGCCTTGAGCAGTTCTTCTCATGAAACCAGAGCATAATGGGGGTTCGTATCTAAACGTGGCGACTACAGCAGCACGTGTTTCAAGCTTTGAAGGTGTCATGTGATTCTGTGACACCAATCTAGTAGTAGAATCCTCAGGTACATAATGGAGGCATATGCGGTTGGCACATATGTTGTGTGCTATGTTGTGCCTGTTGTTCCCATCTTTCTCATAGCTGTATCTTAGCCTCATAGATAGCGAGAACTATAAGTTGGATGAGTGCAGTTCATGGCCATCTAATGGTGTTGTAAAATGTAAATTGAATGCCACAAGTCTTTTTTTTTTTTGGGTTTATTAGTTTCTGTAGCTTTCATTCCATGACGAGCGAAATAGTACCTCTATCGCAATAGAAGCAACTGTAGCTGATGATTCCGGTAATCCGGTTTACTTTCGACTGAATGCTGGATGGAAATTGCTCCTCAAGCTGAGGGAATTAAAAAAAAAAAAACA]
[+] EMBL D43447 [ TGATAAGAGTGAGGAGAATGCTCTATTGGCCCTGGAGAGTGCTGGACTTTNNAAGACTGGTGGCTTGATGAAAGAAAAGGTACTCTCCTNCAGCTCTGAAGTTGGGCGAACTTCATTTGTCCGACAGTTAGAGGCAG TTTTCAaca ]
consensusID : consensus_10981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 610 fasta sequence
[TCTATTGGCCCTGGAGAGTGCTGGACTTTTCAAGACTCGTGGCTTGATGAAAGAAAAGGTGAGATGTTTACCTTACTTTTAGTTATTGTACTGCGTTTCTCTTTTT-CGCCTCTCATGTTCCCTCCATTCCCCACCTCATTTCAATCCTGCATTGAGTAATTATTCTCATTTTATTTATGGATGGTAGAACATGAATAGCCTGTTTTCACCAAATTCATAGGAGGATACAGATGTTAGCAGTTACAGTAAACGTTTCACATGATTGAACTTTTGGTAGAGGCAACTGATACTAATTGATACATGTGCATGGAAATGCTATTGGCGCTTGCATATCAGTTCTGCATATGGAGCTGACTTTGTCTGGCACTCATATCAGTTCTGCATACCCAGCTGAGTTTCAGTCCAAGTTCTGGCTGAGAAAAGAAGTATTTCTCCTGTATATTCAGAACCCTGAAATATCTAGGTGTTAAATAATTTATTTACTTCTGTCACCTACATCTATAATTGAGTGAAAAAGGTGGGTATTGCANGTACTCTTCTGCAGCTCTGAAGTTGGGCGAACTTCATTTGTTCGACAGTTAGAGGCAGATCTTCACATTGACACAAGCCT]
[+] EMBL D42420 [TCTATTGGCCCTGGAGAGTGCTGGACTTTTCAAGACTCGTGGCTTGATGAAAGAAAAGGTGAGATGTTTACCTTACTTTTAGTTATTGTACTGCGTTTCTCTTTTT CGCCTCTCATGTTCCCTCCATTCCCCACCTCATTTCAATCCTGCATTGAGTAATTATTCTCATTTTATTTATGGATGGTAGAACATGAATAGCCTGTTTTCACCAAATTCATAGGAGGATACAGATGTT ]
[+] EMBL CF308820 [ AGTGCTGGACTTTTCAAGACTGGTGGCTTGATGAAAGAAAAGGTGAAATGTTTGCGTTACTTTTAGTTATTGTACTGCGTTTGTTTTTTTGTTCCTCTCATGTTCCCTCCATTCCCCACGTCATTTCAATGCTGCATTGAGTAATTATTCTCATTTTATTTATGGATGGTAGAACATGAATGGCCTGTTTTCACCAAATTCATAGGAGGATACAGATGTTAGCAGTTACAGTAAACGTTTCACATGATTGAACTTTTGGTAGAGGCAACTGATACTAATTGATACATGTGCATGGAAATGCTATTGGCGCTTGCATATCAGTTCTGCATATGGAGCTGACTTTGTCTGGCACTCATATCAGTTCTGCATACCCAGCTGAGTTTCAGTCCAAGTTCTGGCTGAGAAAAGAAGTATTTCTCCTGTATATTCAGAACCCTGAAATATCTAGGTGTTAAATAATTTATTTACTTCTGTCACCTACATCTATAATTGAGTGAAAAAGGTGGGTATTGCANGTACTCTTCTGCAGCTCTGAAGTTGGGCGAACTTCATTTGTTCGACAGTTAGAGGCAGATCTTCACATTGACACAAGCCT]
consensusID : consensus_10981#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 134 fasta sequence
[TAGATAGCGAGAACTATAAGTTGGATGAGTNCAGTTCATGGCCATCTAATGGTGTTGTAAAATGTAAATTGAATGCCCCAAGTCTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU094696 [TAGATAGCGAGAACTATAAGTTGGATGAGTNCAGTTCATGGCCATCTAATGGTGTTGTAAAATGTAAATTGAATGCCCCAAGTCTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10981#0 TCGTCGCCCCCGCAATTTCGCGGTCTCCTCCTCCTCCTCCTCCCCTCGTCTCCACCTCCC 60
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ------------------------------------------------------------
consensus_10981#0 AATCCGGCGATTCCCCAATCCTCCACCACCTCCTCACCCACCCCCCCGACGACCACCTCC 120
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ------------------------------------------------------------
consensus_10981#0 CCCACCTCGCCCAACCACGCGGCAGAAGCAAGTCAAGCCAAGCCGTACGGCACCCCACCC 180
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ------------------------------------------------------------
consensus_10981#0 CCACCCCGCGCAATGCCGGGCCTCGCCGCCGACCAGGACACCGTCTCGCTGGTGCGCCGC 240
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ------------------------------------------------------------
consensus_10981#0 GTCTCCCGCGCCCTCAACCGCCGCCTCACCGACCTCGTCGGCCTCCTCTTCCACCACAAG 300
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ------------------------------------------------------------
consensus_10981#0 AGCGCCGGATCCCTCGGGGCCGTCGCCGGGTTCGCCATCGCTGTCGTGTTCGCGTGGAAG 360
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ------------------------------------------------------------
consensus_10981#0 TTCCTGCGGTCGTCGCCGGCCAGGCCGCGCCGCCCCCCCGGACCGAAGCGGCCGCTCGTC 420
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ------------------------------------------------------------
consensus_10981#0 GGCCCTGCTGCCCCCGATTCCGCCGCTCGCGATGCGGCCGAGCCTGCCAATCCTGGGAAG 480
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ------------------------------------------------------------
consensus_10981#0 CTGACGACACGGCAAATCGTGGTGAAGCGACTGGGCGGGTGTAGAAAGGTGACTTGCCAA 540
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ------------------------------------------------------------
consensus_10981#0 CTGCTTGGTGTTGTCTTTGAGGAGATAACTCCTCAGGAGCTTCAGACACATGCCACTGTT 600
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ------------------------------------------------------------
consensus_10981#0 AGACCTTCAGTGGTGGAACTACTACTCGAAATAGCCAAATACTGTGATTTGTATCTGATG 660
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ------------------------------------------------------------
consensus_10981#0 GAAACTGTACTTGATGATAAGAGTGAGGAGAATGCTCTATTGGCCCTGGAGAGTGCTGGA 720
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 -----------------------------------TCTATTGGCCCTGGAGAGTGCTGGA 25
consensus_10981#0 CTTTTCAAGACTGGTGGCTTGATGAAAGAAAAGGTACTCTTCTGCAGCTCTGAAGTTGGG 780
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 CTTTTCAAGACTCGTGGCTTGATGAAAGAAAAGGTGAGATGTTTA---CCTTACTTTTAG 82
consensus_10981#0 CGAACTTCATTTGTTCGACAGTTAGAGGCAGATTTTCACATTGACACAAGCCTCGATATA 840
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 TTATTGTACTGCGTTTCTCTTTT-----TCGCCTCTCATGTTCCCTCCATTCCCCACCTC 137
consensus_10981#0 ATTTCCCAACTATCTCGGTTCATTCGGTGCCAACTCTTTGTTTCCTCAATAGAAGGAGGA 900
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ATTTCAATCCTGCATTGAGTAATT--ATTCTCATTTTATTTATGGATGGTAGAACATGAA 195
consensus_10981#0 CAACTTGCGGGTAATGTATTTAACTCTCCAAGCCTTGAGCAGTTCTTCTCATGAAACCAG 960
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 TAGCCTGTTTTCACCAAATTCATAGGAGGATACAGATGTTAGCAGTTACAGTAAACGTTT 255
consensus_10981#0 AGCATAATGGGGGTTCGTATCTAAACGTGGCGACTACAGCAGCACGTGTTTCAAGCTTTG 1020
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 CACATGATTGAACTTTTGGTAGAGGCAACTGATACTAATTGATACATGTGCATGGAAATG 315
consensus_10981#0 AAGGTGTCATGTGATTCTGTGACACCAATCTAGTAGTAGAATCCTCAGGTACATAATGGA 1080
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 CTATTGGCGCTTGCATATCAGTTCTGCATATGGAGCTGACTTTGTCTGGCACTCATATCA 375
consensus_10981#0 GGCATATGCGGTTGGCACATATGTTGTGTGCTATGTTGTGCCTGTTGTTCCCATCTTTCT 1140
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 GTTCTGCATACCCAGC---TGAGTTTCAGTCCAAGTTCTGGCTGA-GAAAAGAAGTATTT 431
consensus_10981#0 CATAGCTGTATCTTAGCCTCATAGATAGCGAGAACTATAAGTTGGATGAGTGCAGTTCAT 1200
consensus_10981#2 ---------------------TAGATAGCGAGAACTATAAGTTGGATGAGTNCAGTTCAT 39
consensus_10981#1 CTCCTGTATATTCAGAACCCTGAAATATCTAGGTGT-TAAAT--AATTTATTTACTTCT- 487
* *** * ** * *** * ** * * ***
consensus_10981#0 GGCCATCTAATGGTGTTGTAAAATGTAAAT--TGAATGCCACAAGTCTTTTTTTTTTTGG 1258
consensus_10981#2 GGCCATCTAATGGTGTTGTAAAATGTAAAT--TGAATGCCCCAAGTCTTTTTTTTTTTTA 97
consensus_10981#1 -GTCACCTACATCTATAATTGAGTGAAAAAGGTGGGTATTGCANGTACTCTTCTGC---A 543
* ** *** * * * * ** *** ** * ** ** * ** *
consensus_10981#0 GTTTATTAGTTTCTGTAGCTTTCATTCCATGACGAGCGAACTAGTACCTCTATCGCAATA 1318
consensus_10981#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 134
consensus_10981#1 GCTCTGAAGTTGGGCGAACTTCATTTGTTCGACAGTTAGAGGCAGATCTTCACATTGACA 603
* * *
consensus_10981#0 GAAGCAACTGTAGCTGATGATTCCGGTAATCCGGTTTACTTTCGACTGAATGCTGGATGG 1378
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 CAAGCCT----------------------------------------------------- 610
consensus_10981#0 AAATTGCTCCTCAAGCTGAGGGAATTAAAAAAAAAAAAACA 1419
consensus_10981#2 -----------------------------------------
consensus_10981#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||