These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10984#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 957 fasta sequence [AGATGATTCCAGTAATGCTGATGGGAACTATACTGTATGGTGTCAAGTACACATTTCCGGAGTACATTTGCACCTTTCTTGTTGCTGGGGGTGTATCATCCTTTGCGTTGTTGAAGACAAGCTCCAAGACTATCAAGAAGCTTGCTAACCCTAATGCGCCTCTGGGCTACACATTGTGCTTCCTCAACTTAGCTTTTGATGGTTACACCAATTCGACCCAAGATTTGATAAAGTCTAGGTATCCAAAGACTAATCCATGGGATATAATGCTTGGCATGAATCTCTGGGGGACCATATACAATGCTGTGATTATGTTTGTTGCTCCATTACTATTCAGTAATTGGCCTTACGCCAACGGTTTTGAGGCAGTGAGATTTTGCCAGGAGAACCCAGAGGT-GGCATGGGACATTCTCCTGTTC-TGCCTGTGTGGTGCCGTGGG-TCAGAA-TTTC-ATCTT--CC-TAACCATCAGCCGATTTGGCTCTC-TTACTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGCAATGGGGAAGTGTTGTGATGG-TCTTTTCTGGTCTCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCACAAGGAATGAGTTTAATATTTTAGCTCATTCCAATTTGTAGCTTCGATTGGACATGTTTGTTGTTGGGTTATATGGGAGATAATTATTGCAGCCCATTACTGATT-CAGGAGAAGTTTTACATCGAT-AAAAAACTGAGATG-TATGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAGGAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAACGATAATTATGTTTCAAAAAA] [+] EMBL AK060274 [AGATGATTCCAGTAATGCTGATGGGAACTATACTGTATGGTGTCAAGTACACATTTCCGGAGTACATTTGCACCTTTCTTGTTGCTGGGGGTGTATCATCCTTTGCGTTGTTGAAGACAAGCTCCAAGACTATCAAGAAGCTTGCTAACCCTAATGCGCCTCTGGGCTACACATTGTGCTTCCTCAACTTAGCTTTTGATGGTTACACCAATTCGACCCAAGATTTGATAAAGTCTAGGTATCCAAAGACTAATCCATGGGATATAATGCTTGGCATGAATCTCTGGGGGACCATATACAATGCTGTGATTATGTTTGTTGCTCCATTACTATTCAGTAATTGGCCTTACGCCAACGGTTTTGAGGCAGTGAGATTTTGCCAGGAGAACCCAGAGGT GGCATGGGACATTCTCCTGTTC TGCCTGTGTGGTGCCGTGGG TCAGAA TTTC ATCTT CC TAACCATCAGCCGATTTGGCTCTC TTACTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGCAATGGGGAAGTGTTGTGATGG TCTTTTCTGGTCTCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCACAAGGAATGAGTTTAATATTTTAGCTCATTCCAATTTGTAGCTTCGATTGGACATGTTTGTTGTTGGGTTATATGGGAGATAATTATTGCAGCCCATTACTGATT CAGGAGAAGTTTTACATCGATAAAAAAACTGAGATG TATGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAGGAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAACGATAATTATGTTTC ] [+] EMBL AK071175 [AGATGATTCCAGTAATGCTGATGGGAACTATACTGTATGGTGTCAAGTACACATTTCCGGAGTACATTTGCACCTTCCTTGTTGCTGGGGGTGTATCATCCTTTGCGTTGTTGAAGACAAGCTCCAAGACTATCAAGAAGCTTGCTAACCCTAATGCGCCTCTGGGCTACACATTGTGCTTCCTCAACTTAGCTTTTGATGGTTACACCAATTCGACCCAAGATTTGATAAAGTCTAGGTATCCAAAGACTAATCCATGGGATATAATGCTTGGCATGAATCTCTGGGGGACCACATACAATGCTGTGATTATGTTTGTTGCTCCATTACTATTCAGTAATTGGCCTTACGCCAACGGTTTTGAGGCAGTGAGATTTTGCCAGGAGAACCCAGAGGT GGCATGGGACATTCTCCTGTTC TGCCTGTGTGGTGCCGTGGG TCAGAA TTTC ATCTT CC TAACCATCAGCCGATTTGGCTCTC TTACTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGCAATGGGGAAGTGTTGTGATGG TCTTTTCTGGTCTCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCACAAGGAATGAGTTTAATATTTTAGCTCATTCCAATTTGTAGCTTCGATTGGACATGTTTGTTGTTGGGTTATATGGGAGATAATTATTGCAGCCCATTACTGATT CAGGAGAAGTTTTACATCGAT AAAAAACTGAGATG TATGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAGGAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAACGATAATTA ] [+] EMBL BI806587 [ ACCCAGAGGTNGCCATGGGACCTTCCCCGGTTCGCGCCTGTGTGGT CCCTGGGTTCAGAATTTTCAATCTTTCCCTTAACCATCACCCGATTT GCTCTCTTTACT ACACTACCATCACCACCACCCGCAAGTTCATGA CATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGCCATGGGGAAGT TTGTGATGG TCTTTTCTGGTCTCTCTTTACNAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCACAAGGAATGAGTTTAATATTTTAGCTCATTCCCATTTGTAGCTTCGATTGGACATGTTTGTTGTTGGGTTATATGGGAGATAATTATTGCAGCCCATTACTGATTCCAGGAGAAGTTTTACATCGAT AAAAAACTGAGATGCCNTGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAGGAAGAAGATGCCATGAATTGTATTGCGCTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAAaaaaaa ] [+] EMBL CB096364 [ GACATTCTCCTGTTC CGCCTGTGTGGTGCCGTGGG TCAGAA TTTC ATCTT CC TAACCATCAGCCGATTTGGCTCTC TTACTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGCAATGGGGAAGTGTTGCGATGGTTTTTTTCTGGTCTCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCACAAGGAATGAGTTCAATATTTTAGCTCATTCCAATTTGTAGCTTCGATTGGACATGTTTGTTATTGGGTCATATGGGAGATAATTATTGCAGCCCATTACCGATT CAGGAGAAGTTTTACATCGAT AAAAAACTGAGATG TATGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAGGAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATC ] [+] EMBL AA749668 [ TTGCGTCTC TTACTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGCAATGGGGAAGTGTTGTGATGG TCTTTTCTGGTCTCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGCCAACAAGGAATGAGTTTAATATTTTANCTCATTCCAATTTGTAGCTTCG ] [+] EMBL BI799851 [ ACTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGC ATGGGGAAGTGTTGTGATGG TTTTTTCTGGTCTCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCAC AGGAATGAGTTCAATATTTTAGCTCATTCC ATTTGTAGCTTCGATTGGACATGTTTGTTGTTGGGTTATATGGGAGATAATTATTGCAGCCCATTACTGATT CAGGAGAAGTTTTACATCGAT AAAAAACTGAGATG TATGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAGGAAGAAGATGC ATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATC AAACGATAATTATGTTTCAAAAAA] [+] EMBL AU174630 [ CTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGCAATGGGGAAGTGTTGTGATGG TCTTTTCTGGTCTCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCACAAGGAATGAGTTTAATATTTTAGCTCATTCCAATTTGTAGCTTCGATTGGACATGTTTGTTGTTGGGTTATATGGGAGATAATTATTGCAGCCCATTACTGATT CAGGAGAAGTTTTACATCGAT AAAAAACTGAGATG TATGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAGGAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAAC ] consensusID : consensus_10984#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 172 fasta sequence [CGAGGACGAGACAAGGGGGAAGTNAGGAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA767372 [CGAGGACGAGACAAGGGGGAAGTNAGGAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10984#0 AGATGATTCCAGTAATGCTGATGGGAACTATACTGTATGGTGTCAAGTACACATTTCCGG 60 consensus_10984#1 ------------------------------------------------------------ consensus_10984#0 AGTACATTTGCACCTTTCTTGTTGCTGGGGGTGTATCATCCTTTGCGTTGTTGAAGACAA 120 consensus_10984#1 ------------------------------------------------------------ consensus_10984#0 GCTCCAAGACTATCAAGAAGCTTGCTAACCCTAATGCGCCTCTGGGCTACACATTGTGCT 180 consensus_10984#1 ------------------------------------------------------------ consensus_10984#0 TCCTCAACTTAGCTTTTGATGGTTACACCAATTCGACCCAAGATTTGATAAAGTCTAGGT 240 consensus_10984#1 ------------------------------------------------------------ consensus_10984#0 ATCCAAAGACTAATCCATGGGATATAATGCTTGGCATGAATCTCTGGGGGACCATATACA 300 consensus_10984#1 ------------------------------------------------------------ consensus_10984#0 ATGCTGTGATTATGTTTGTTGCTCCATTACTATTCAGTAATTGGCCTTACGCCAACGGTT 360 consensus_10984#1 ------------------------------------------------------------ consensus_10984#0 TTGAGGCAGTGAGATTTTGCCAGGAGAACCCAGAGGTGGCATGGGACATTCTCCTGTTCT 420 consensus_10984#1 ------------------------------------------------------------ consensus_10984#0 GCCTGTGTGGTGCCGTGGGTCAGAATTTCATCTTCCTAACCATCAGCCGATTTGGCTCTC 480 consensus_10984#1 ------------------------------------------------------------ consensus_10984#0 TTACTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCA 540 consensus_10984#1 ------------------------------------------------------------ consensus_10984#0 TCAGTGGTAACCCACTCTCCTTGAAGCAATGGGGAAGTGTTGTGATGGTCTTTTCTGGTC 600 consensus_10984#1 ------------------------------------------------------------ consensus_10984#0 TCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCACAAGGAATGAG 660 consensus_10984#1 ------------------------------------------------------------ consensus_10984#0 TTTAATATTTTAGCTCATTCCAATTTGTAGCTTCGATTGGACATGTTTGTTGTTGGGTTA 720 consensus_10984#1 ------------------------------------------------------------ consensus_10984#0 TATGGGAGATAATTATTGCAGCCCATTACTGATTCAGGAGAAGTTTTACATCGATAAAAA 780 consensus_10984#1 ------------------------------------------------------------ consensus_10984#0 ACTGAGATGTATGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAG 840 consensus_10984#1 ----------------------------------CGAGGACGAGACAAGGGGGAAGTNAG 26 ** * ****** ** consensus_10984#0 GAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTT 900 consensus_10984#1 GAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTT 86 ************************************************************ consensus_10984#0 TTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAACGATAATTATGTTTCAAAAAA--- 957 consensus_10984#1 TTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 146 ************************************ * ** * ****** consensus_10984#0 -------------------------- consensus_10984#1 AAAAAAAAAAAAAAAAAAAAAAAAAA 172 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||