cluster # 10984

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Oryza sativa
cluster # 10984 cluster # 10984 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10984#0 length = 957 sequences # 7

consensus_10984#1 length = 172 sequences # 1

consensusID : consensus_10984#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 957
fasta sequence

                              [AGATGATTCCAGTAATGCTGATGGGAACTATACTGTATGGTGTCAAGTACACATTTCCGGAGTACATTTGCACCTTTCTTGTTGCTGGGGGTGTATCATCCTTTGCGTTGTTGAAGACAAGCTCCAAGACTATCAAGAAGCTTGCTAACCCTAATGCGCCTCTGGGCTACACATTGTGCTTCCTCAACTTAGCTTTTGATGGTTACACCAATTCGACCCAAGATTTGATAAAGTCTAGGTATCCAAAGACTAATCCATGGGATATAATGCTTGGCATGAATCTCTGGGGGACCATATACAATGCTGTGATTATGTTTGTTGCTCCATTACTATTCAGTAATTGGCCTTACGCCAACGGTTTTGAGGCAGTGAGATTTTGCCAGGAGAACCCAGAGGT-GGCATGGGACATTCTCCTGTTC-TGCCTGTGTGGTGCCGTGGG-TCAGAA-TTTC-ATCTT--CC-TAACCATCAGCCGATTTGGCTCTC-TTACTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGCAATGGGGAAGTGTTGTGATGG-TCTTTTCTGGTCTCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCACAAGGAATGAGTTTAATATTTTAGCTCATTCCAATTTGTAGCTTCGATTGGACATGTTTGTTGTTGGGTTATATGGGAGATAATTATTGCAGCCCATTACTGATT-CAGGAGAAGTTTTACATCGAT-AAAAAACTGAGATG-TATGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAGGAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAACGATAATTATGTTTCAAAAAA]

[+] EMBL AK060274             [AGATGATTCCAGTAATGCTGATGGGAACTATACTGTATGGTGTCAAGTACACATTTCCGGAGTACATTTGCACCTTTCTTGTTGCTGGGGGTGTATCATCCTTTGCGTTGTTGAAGACAAGCTCCAAGACTATCAAGAAGCTTGCTAACCCTAATGCGCCTCTGGGCTACACATTGTGCTTCCTCAACTTAGCTTTTGATGGTTACACCAATTCGACCCAAGATTTGATAAAGTCTAGGTATCCAAAGACTAATCCATGGGATATAATGCTTGGCATGAATCTCTGGGGGACCATATACAATGCTGTGATTATGTTTGTTGCTCCATTACTATTCAGTAATTGGCCTTACGCCAACGGTTTTGAGGCAGTGAGATTTTGCCAGGAGAACCCAGAGGT GGCATGGGACATTCTCCTGTTC TGCCTGTGTGGTGCCGTGGG TCAGAA TTTC ATCTT  CC TAACCATCAGCCGATTTGGCTCTC TTACTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGCAATGGGGAAGTGTTGTGATGG TCTTTTCTGGTCTCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCACAAGGAATGAGTTTAATATTTTAGCTCATTCCAATTTGTAGCTTCGATTGGACATGTTTGTTGTTGGGTTATATGGGAGATAATTATTGCAGCCCATTACTGATT CAGGAGAAGTTTTACATCGATAAAAAAACTGAGATG TATGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAGGAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAACGATAATTATGTTTC      ]
[+] EMBL AK071175             [AGATGATTCCAGTAATGCTGATGGGAACTATACTGTATGGTGTCAAGTACACATTTCCGGAGTACATTTGCACCTTCCTTGTTGCTGGGGGTGTATCATCCTTTGCGTTGTTGAAGACAAGCTCCAAGACTATCAAGAAGCTTGCTAACCCTAATGCGCCTCTGGGCTACACATTGTGCTTCCTCAACTTAGCTTTTGATGGTTACACCAATTCGACCCAAGATTTGATAAAGTCTAGGTATCCAAAGACTAATCCATGGGATATAATGCTTGGCATGAATCTCTGGGGGACCACATACAATGCTGTGATTATGTTTGTTGCTCCATTACTATTCAGTAATTGGCCTTACGCCAACGGTTTTGAGGCAGTGAGATTTTGCCAGGAGAACCCAGAGGT GGCATGGGACATTCTCCTGTTC TGCCTGTGTGGTGCCGTGGG TCAGAA TTTC ATCTT  CC TAACCATCAGCCGATTTGGCTCTC TTACTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGCAATGGGGAAGTGTTGTGATGG TCTTTTCTGGTCTCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCACAAGGAATGAGTTTAATATTTTAGCTCATTCCAATTTGTAGCTTCGATTGGACATGTTTGTTGTTGGGTTATATGGGAGATAATTATTGCAGCCCATTACTGATT CAGGAGAAGTTTTACATCGAT AAAAAACTGAGATG TATGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAGGAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAACGATAATTA            ]
[+] EMBL BI806587             [                                                                                                                                                                                                                                                                                                                                                                                                   ACCCAGAGGTNGCCATGGGACCTTCCCCGGTTCGCGCCTGTGTGGT CCCTGGGTTCAGAATTTTCAATCTTTCCCTTAACCATCACCCGATTT GCTCTCTTTACT ACACTACCATCACCACCACCCGCAAGTTCATGA CATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGCCATGGGGAAGT TTGTGATGG TCTTTTCTGGTCTCTCTTTACNAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCACAAGGAATGAGTTTAATATTTTAGCTCATTCCCATTTGTAGCTTCGATTGGACATGTTTGTTGTTGGGTTATATGGGAGATAATTATTGCAGCCCATTACTGATTCCAGGAGAAGTTTTACATCGAT AAAAAACTGAGATGCCNTGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAGGAAGAAGATGCCATGAATTGTATTGCGCTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAAaaaaaa               ]
[+] EMBL CB096364             [                                                                                                                                                                                                                                                                                                                                                                                                                     GACATTCTCCTGTTC CGCCTGTGTGGTGCCGTGGG TCAGAA TTTC ATCTT  CC TAACCATCAGCCGATTTGGCTCTC TTACTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGCAATGGGGAAGTGTTGCGATGGTTTTTTTCTGGTCTCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCACAAGGAATGAGTTCAATATTTTAGCTCATTCCAATTTGTAGCTTCGATTGGACATGTTTGTTATTGGGTCATATGGGAGATAATTATTGCAGCCCATTACCGATT CAGGAGAAGTTTTACATCGAT AAAAAACTGAGATG TATGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAGGAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATC                                   ]
[+] EMBL AA749668             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTGCGTCTC TTACTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGCAATGGGGAAGTGTTGTGATGG TCTTTTCTGGTCTCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGCCAACAAGGAATGAGTTTAATATTTTANCTCATTCCAATTTGTAGCTTCG                                                                                                                                                                                                                                                                         ]
[+] EMBL BI799851             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGC ATGGGGAAGTGTTGTGATGG TTTTTTCTGGTCTCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCAC AGGAATGAGTTCAATATTTTAGCTCATTCC ATTTGTAGCTTCGATTGGACATGTTTGTTGTTGGGTTATATGGGAGATAATTATTGCAGCCCATTACTGATT CAGGAGAAGTTTTACATCGAT AAAAAACTGAGATG TATGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAGGAAGAAGATGC ATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATC AAACGATAATTATGTTTCAAAAAA]
[+] EMBL AU174630             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGCAATGGGGAAGTGTTGTGATGG TCTTTTCTGGTCTCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCACAAGGAATGAGTTTAATATTTTAGCTCATTCCAATTTGTAGCTTCGATTGGACATGTTTGTTGTTGGGTTATATGGGAGATAATTATTGCAGCCCATTACTGATT CAGGAGAAGTTTTACATCGAT AAAAAACTGAGATG TATGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAGGAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAAC                    ]




>consensus_10984#0
AGATGATTCCAGTAATGCTGATGGGAACTATACTGTATGGTGTCAAGTACACATTTCCGG
AGTACATTTGCACCTTTCTTGTTGCTGGGGGTGTATCATCCTTTGCGTTGTTGAAGACAA
GCTCCAAGACTATCAAGAAGCTTGCTAACCCTAATGCGCCTCTGGGCTACACATTGTGCT
TCCTCAACTTAGCTTTTGATGGTTACACCAATTCGACCCAAGATTTGATAAAGTCTAGGT
ATCCAAAGACTAATCCATGGGATATAATGCTTGGCATGAATCTCTGGGGGACCATATACA
ATGCTGTGATTATGTTTGTTGCTCCATTACTATTCAGTAATTGGCCTTACGCCAACGGTT
TTGAGGCAGTGAGATTTTGCCAGGAGAACCCAGAGGTGGCATGGGACATTCTCCTGTTCT
GCCTGTGTGGTGCCGTGGGTCAGAATTTCATCTTCCTAACCATCAGCCGATTTGGCTCTC
TTACTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCA
TCAGTGGTAACCCACTCTCCTTGAAGCAATGGGGAAGTGTTGTGATGGTCTTTTCTGGTC
TCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCACAAGGAATGAG
TTTAATATTTTAGCTCATTCCAATTTGTAGCTTCGATTGGACATGTTTGTTGTTGGGTTA
TATGGGAGATAATTATTGCAGCCCATTACTGATTCAGGAGAAGTTTTACATCGATAAAAA
ACTGAGATGTATGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAG
GAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTT
TTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAACGATAATTATGTTTCAAAAAA

consensusID : consensus_10984#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 172
fasta sequence

                              [CGAGGACGAGACAAGGGGGAAGTNAGGAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA767372             [CGAGGACGAGACAAGGGGGAAGTNAGGAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10984#1
CGAGGACGAGACAAGGGGGAAGTNAGGAAGAAGATGCAATGAATTGTATTGCACTGAGTA
GTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCTCCCTAAAGGAATCGCTAATTATCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10984#0      AGATGATTCCAGTAATGCTGATGGGAACTATACTGTATGGTGTCAAGTACACATTTCCGG 60
consensus_10984#1      ------------------------------------------------------------
                                                                                   

consensus_10984#0      AGTACATTTGCACCTTTCTTGTTGCTGGGGGTGTATCATCCTTTGCGTTGTTGAAGACAA 120
consensus_10984#1      ------------------------------------------------------------
                                                                                   

consensus_10984#0      GCTCCAAGACTATCAAGAAGCTTGCTAACCCTAATGCGCCTCTGGGCTACACATTGTGCT 180
consensus_10984#1      ------------------------------------------------------------
                                                                                   

consensus_10984#0      TCCTCAACTTAGCTTTTGATGGTTACACCAATTCGACCCAAGATTTGATAAAGTCTAGGT 240
consensus_10984#1      ------------------------------------------------------------
                                                                                   

consensus_10984#0      ATCCAAAGACTAATCCATGGGATATAATGCTTGGCATGAATCTCTGGGGGACCATATACA 300
consensus_10984#1      ------------------------------------------------------------
                                                                                   

consensus_10984#0      ATGCTGTGATTATGTTTGTTGCTCCATTACTATTCAGTAATTGGCCTTACGCCAACGGTT 360
consensus_10984#1      ------------------------------------------------------------
                                                                                   

consensus_10984#0      TTGAGGCAGTGAGATTTTGCCAGGAGAACCCAGAGGTGGCATGGGACATTCTCCTGTTCT 420
consensus_10984#1      ------------------------------------------------------------
                                                                                   

consensus_10984#0      GCCTGTGTGGTGCCGTGGGTCAGAATTTCATCTTCCTAACCATCAGCCGATTTGGCTCTC 480
consensus_10984#1      ------------------------------------------------------------
                                                                                   

consensus_10984#0      TTACTAACACTACCATCACCACCACCCGCAAGTTCATGAGCATTGTCATCTCCTCCGTCA 540
consensus_10984#1      ------------------------------------------------------------
                                                                                   

consensus_10984#0      TCAGTGGTAACCCACTCTCCTTGAAGCAATGGGGAAGTGTTGTGATGGTCTTTTCTGGTC 600
consensus_10984#1      ------------------------------------------------------------
                                                                                   

consensus_10984#0      TCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCACAAGGAATGAG 660
consensus_10984#1      ------------------------------------------------------------
                                                                                   

consensus_10984#0      TTTAATATTTTAGCTCATTCCAATTTGTAGCTTCGATTGGACATGTTTGTTGTTGGGTTA 720
consensus_10984#1      ------------------------------------------------------------
                                                                                   

consensus_10984#0      TATGGGAGATAATTATTGCAGCCCATTACTGATTCAGGAGAAGTTTTACATCGATAAAAA 780
consensus_10984#1      ------------------------------------------------------------
                                                                                   

consensus_10984#0      ACTGAGATGTATGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTACAGGAAGTCAG 840
consensus_10984#1      ----------------------------------CGAGGACGAGACAAGGGGGAAGTNAG 26
                                                           **     *       ****** **

consensus_10984#0      GAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTT 900
consensus_10984#1      GAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTT 86
                       ************************************************************

consensus_10984#0      TTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAACGATAATTATGTTTCAAAAAA--- 957
consensus_10984#1      TTGTTCTCTCCCTAAAGGAATCGCTAATTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 146
                       ************************************  * **  *      ******   

consensus_10984#0      --------------------------
consensus_10984#1      AAAAAAAAAAAAAAAAAAAAAAAAAA 172