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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 959 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTCAACACAATGAAATGCAATTTAACACTTCATGTGTTGTTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATCCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACATGATTCCATCACCAAACTCCTCATTGATAATTTCCTTGATGCTCTCTCCAAAATGCATAACAGCTTCATTCAATCTGTAGATTGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGCGGAACGGCGGCTCCATCATGAGCGCGACGAGGTCGTCGGTGAGCCCCGGAACGGCCGCCCGCAGCGCCGGCGCCGTCTCCGGCTTCAGCTGCGCCTGCCGCCGCAGCAGCTGCGCCACGTACACGTTGGTCAGCCCCGCCTCCTCCCCGATCTCCGAGAAGCTCTTCCGCGACTCCGCCTTCGCCGCCATCAGCCGCCGCACCACCCCCGCCGCCCTCTCCCCGCCGCCGCCCTCCATATCCCTCTCCTCTCCTCTCCTCCCGCCGCCANGGCGTCGCAGTCGATGTGAGTGGGTCGAGGTCGTCGTCGGCGGCGGCGCGATGCACGGTGGCCTCAAAATCACAGCTTTTGTATGCTCAT]
[-] EMBL CF312502 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTCTGTTCAACACAATGAAATGCAATTTAACACTTCATGTGTTGTTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGCATGTTTATTTCATCGACT ]
[-] EMBL AU162382 [ TTTTTCTGTTCAACACAATGAAATGCAATTTAACACTTCATGTGTTGTTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATCCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACATGATTCCATCACCAAACTCCTCATTGATAATTTCCTTGATGCTCTCTCCAAAATGC ]
[-] EMBL CA765570 [ TTTTTCTGTTCAACACAATGAAATGCAATTTAACACTTCATGTGTTGTTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGCTTAAACAGTTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATTCACAAGCAGAAGCAGAT ]
[+] EMBL CB627110 [ TTTAACACTTCATGTGTTGTTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATTCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACATGATTCCATCACCAAATTCCTCATTGATAATTTCCTTGATGCTCTCTCCAAAATGCATAACAGCTTCATTCAATCTGTAGATTGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGCGGAACGGCGGCTCCATCATGAGCGCGACGAGGTCGTCGGTGAGCCCCGGAACGGCCGCCCGCAGCGCCGGCGCCGTCTCCGGCTTCAGCTGCGCCTGCCGCCGCAGCAGCTGCGCCACGTACACGTTGGTCAGCCCCGCCTCCTCCCCGATCTCCGAGAAGCTCTTCCGCGACTCCGCCTTCGCCGCCATCAGCCGCCGCACCACCCCCGCCGCCCTCTCCCCGCCGCCGCCCTCCATATCCCTCTCCTCTCCTCTCCTCCCGCCGCCANGGCGTCGCAGTCGATGTGAGTGGGTCGAGGTCGTCGTCGGCGGCGGCGCGATGCACGGTGGCCTCAAAATCACAGCTTTTGTATGCTCAT]
[-] EMBL AK105134 [ AACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATCCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACATGATTCCATCACCAAACTCCTCATTGATAATTTCCTTGATGCTCTCTCCAAAATGCATAACAGCTTCATTCAATCTGTAGATGGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGCGGAACGGCGGCTCCATCATGAGCGCGACGAGGTCGTCGGTGAGCCCCGGCACGGCCGCCCGCAGCGCCGGCGCCGTCTCCGGCTTCAGCTGCGCCTGCCGCCGCAGCAGCTGCGCCACGTACACGTTGGTCAGCCCCGCCTCCTCCCCGATCTCCGAGAAGCTCTTCCGCGACTCCGCCTTCGCCGCCATCAGCCGCCGCACCACCCCCGCCGCCCTCTCCCCGCCGCCGCCCTCCATATCCCTCTCCTCTCCTCTCCTCCCGCCGCCA CGCGTCGCAGTCGAGGTGAGTGGGTCGAGGTCGTCGTCGGCGGCGGCGCGATGCACGGTGGCCTCAAAAT ]
[-] EMBL OSR04781A [ AATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATCCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACATGATTCCATCACCAAACTCCTCATTGATAATTTCCTTGATGCTCTCTCCAAAATGC ]
consensusID : consensus_10988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[CTCGAGTTTTTTTTTTTTTTTTTTTGGTGGTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATTCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACACGATTCCATCACCAAACTCCTCATTGATAATTTCCTTGATGCTCTCTCCAAAATGCATAACAGCTTCATTCAATCTGTAGATGGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGCGGAACGGCGGCTCCATCATGAGCGCGACGAGGTCGTCGGTGAGCCCCGGCACGGCCGCCCGCAGCGCCGGCGCCGTCTCCGGCTTCAGCTGCGCCTGCCGCCGCAGCAGCTGCGCCACGTACACGTTGGTCAGCCCCGCCTCCTCCCCGATCTCCGAGAAGCTCTTCCGCGACTCCG]
[+] EMBL CA754744 [CTCGAGTTTTTTTTTTTTTTTTTTTGGTGGTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATTCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACACGATTCCATCACCAAACTCCTCATTGATAATTTCCTTGATGCTCTCTCCAAAATGCATAACAGCTTCATTCAATCTGTAGATGGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGCGGAACGGCGGCTCCATCATGAGCGCGACGAGGTCGTCGGTGAGCCCCGGCACGGCCGCCCGCAGCGCCGGCGCCGTCTCCGGCTTCAGCTGCGCCTGCCGCCGCAGCAGCTGCGCCACGTACACGTTGGTCAGCCCCGCCTCCTCCCCGATCTCCGAGAAGCTCTTCCGCGACTCCG]
consensusID : consensus_10988#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence
[TTTTTTTCAGAAAATATCTTTTCTGTTCAAACAATGAAATGGAATTTAACACTTCATGTGTTGTTTATTAATTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATGGGGAGTAAAAAACATGCTCGATTCTATTCAATCCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAAACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACATGATTCCATCACCAAACTCCTCATGTGATAATTTCCTTGATGCTCTCTCCAAAATGATAACAGTTCATTCAATCTGTAGATGGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGCGGGAACGGG]
[-] EMBL BI797696 [TTTTTTTCAGAAAATATCTTTTCTGTTCAAACAATGAAATGGAATTTAACACTTCATGTGTTGTTTATTAATTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATGGGGAGTAAAAAACATGCTCGATTCTATTCAATCCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAAACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACATGATTCCATCACCAAACTCCTCATGTGATAATTTCCTTGATGCTCTCTCCAAAATGATAACAGTTCATTCAATCTGTAGATGGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGCGGGAACGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10988#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_10988#2 ------------------------------------------------------------
consensus_10988#1 ------------------------------------------------------------
consensus_10988#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTCAACACAATGAAATGCAATTTAAC 120
consensus_10988#2 ---------TTTTTTTCAGAAAATATCTTTTCTGTTCAA-ACAATGAAATGGAATTTAAC 50
consensus_10988#1 -------------------------------------------CTCGAGTTTTTTTTTTT 17
* * * ***
consensus_10988#0 ACTTCATGTGTTGTTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAAC 180
consensus_10988#2 ACTTCATGTGTTGTTTATTAA-TTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAAC 109
consensus_10988#1 TTTTTTT-TGGTGGTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAAC 76
** * ** ** ******* **************************************
consensus_10988#0 TGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCAT 240
consensus_10988#2 TGTATCTCTG-TTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCAT 168
consensus_10988#1 TGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCAT 136
********** *************************************************
consensus_10988#0 CGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATCCACAAGCAGAAGCAGATGA 300
consensus_10988#2 CGACTATGGGGAGTAAAAAACATGCTCGATTCTATTCAATCCACAAGCAGAAGCAGATGA 228
consensus_10988#1 CGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATTCACAAGCAGAAGCAGATGA 196
******* ******************************** *******************
consensus_10988#0 TACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACAT 360
consensus_10988#2 TACATCATTTTTCCCACAA-ACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACAT 287
consensus_10988#1 TACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACAT 256
******************* ****************************************
consensus_10988#0 CATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCAC 420
consensus_10988#2 CATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCAC 347
consensus_10988#1 CATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCAC 316
************************************************************
consensus_10988#0 GCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGA 480
consensus_10988#2 GCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGA 407
consensus_10988#1 GCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGA 376
************************************************************
consensus_10988#0 CATGATTCCATCACCAAACTCCTCAT-TGATAATTTCCTTGATGCTCTCTCCAAAATGCA 539
consensus_10988#2 CATGATTCCATCACCAAACTCCTCATGTGATAATTTCCTTGATGCTCTCTCCAAAATG-A 466
consensus_10988#1 CACGATTCCATCACCAAACTCCTCAT-TGATAATTTCCTTGATGCTCTCTCCAAAATGCA 435
** *********************** ******************************* *
consensus_10988#0 TAACAGCTTCATTCAATCTGTAGATTGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGC 599
consensus_10988#2 TAACAG-TTCATTCAATCTGTAGATGGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGC 525
consensus_10988#1 TAACAGCTTCATTCAATCTGTAGATGGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGC 495
****** ****************** **********************************
consensus_10988#0 GGAACGGCGGCTCCATCATGAGCGCGACGAGGTCGTCGGTGAGCCCCGGAACGGCCGCCC 659
consensus_10988#2 GGGAACGGG--------------------------------------------------- 534
consensus_10988#1 GGAACGGCGGCTCCATCATGAGCGCGACGAGGTCGTCGGTGAGCCCCGGCACGGCCGCCC 555
** * * *
consensus_10988#0 GCAGCGCCGGCGCCGTCTCCGGCTTCAGCTGCGCCTGCCGCCGCAGCAGCTGCGCCACGT 719
consensus_10988#2 ------------------------------------------------------------
consensus_10988#1 GCAGCGCCGGCGCCGTCTCCGGCTTCAGCTGCGCCTGCCGCCGCAGCAGCTGCGCCACGT 615
consensus_10988#0 ACACGTTGGTCAGCCCCGCCTCCTCCCCGATCTCCGAGAAGCTCTTCCGCGACTCCGCCT 779
consensus_10988#2 ------------------------------------------------------------
consensus_10988#1 ACACGTTGGTCAGCCCCGCCTCCTCCCCGATCTCCGAGAAGCTCTTCCGCGACTCCG--- 672
consensus_10988#0 TCGCCGCCATCAGCCGCCGCACCACCCCCGCCGCCCTCTCCCCGCCGCCGCCCTCCATAT 839
consensus_10988#2 ------------------------------------------------------------
consensus_10988#1 ------------------------------------------------------------
consensus_10988#0 CCCTCTCCTCTCCTCTCCTCCCGCCGCCANGGCGTCGCAGTCGATGTGAGTGGGTCGAGG 899
consensus_10988#2 ------------------------------------------------------------
consensus_10988#1 ------------------------------------------------------------
consensus_10988#0 TCGTCGTCGGCGGCGGCGCGATGCACGGTGGCCTCAAAATCACAGCTTTTGTATGCTCAT 959
consensus_10988#2 ------------------------------------------------------------
consensus_10988#1 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||