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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10994#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 918 fasta sequence
[GCCAAATCCCATCTCCATTTTCCTCTCTTTCTCGTTGCGATTTGAGAATTCACCTTCTTCTTCCTCCTCTCGCCTCCTACCTCTTGCTGCAGCGCACGGCGCCGCGCCGTCATCTCGTGCTTGTATCCTTGTTCTTCATCTTCTCTCACCTTCCCTTGAGAAGATTTGTTATTACTAGTTTAATATTTCTAGGAAAGAGGAGAAGAGGAGAGGAGAGGAGAGGGTGGTAACGCAGCGTTAGGTGGGGGCGTGCTAGGGAGTCAAGAACAGAAGGAAGGGAGGCCCAACTGCTCCATCCTCCCTTTCCCCAAATCCACTCCTTCCTTTCGATTTGCCTCCTTCCTTCCTTGGTTCATTCATTGATTTTTGCACCGCATTTGAGGAAGAATGTGCCCGCTGAGGGTGATCCTAATCTTCCTCTCCGCCACCATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCGACCTCCACGACGATGCCGACGCCTCCGAATCCCCAAGGGAAAGGCCCCCCGTGCCCCTCCATTCCAAGGTTGGGTCGGCTTTGAAAACAGGATTCTGGACGATGGTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTCTTGTTTCACCACCAACAAAATGTGAATCTGAGAAGG-CCCAGTG-ATGGAGTTC-TGATATTTATATCATTGTTGATTTGGGAATAGACGTAACCCCTATTGTGGTTAGATTCTGTTCTTGAAGTGTAATATGATGGCAACTGTAACATGAGGATTACATCTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCCTTTTCGTGTAACCTAAAACAATGAGTGGAGAATTGTATTAATACATGAGATTTGGACTGAAGTTTCTGAATACAATAGTTGGACACTATTCTTTATTTTCCTGTTGAAAAA]
[+] EMBL AK073235 [GCCAAATCCCATCTCCATTTTCCTCTCTTTCTCGTTGCGATTTGAGAATTCACCTTCTTCTTCCTCCTCTCGCCTCCTACCTCTTGCTGCAGCGCACGGCGCCGCGCCGTCATCTCGTGCTTGTATCCTTGTTCTTCATCTTCTCTCACCTTCCCTTGAGAAGATTTGTTATTACTAGTTTAATATTTCTAGGAAAGAGGAGAAGAGGAGAGGAGAGGAGAGGGTGGTAACGCAGCGTTAGGTGGGGGCGTGCTAGGGAGTCAAGAACAGAAGGAAGGGAGGCCCAACTGCTCCATCCTCCCTTTCCCCAAATCCACTCCTTCCTTTCGATTTGCCTCCTTCCTTCCTTGGTTCATTCATTGATTTTTGCACCGCATTTGAGGAAGAATGTGCCCGCTGAGGGTGATCCTAATCTTCCTCTCCGCCACCATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCGACCTCCACGACGATGCCGACGCCTCCGAATCCCCAAGGGAAAGGCCCCCCGTGCCCCTCCATTCCAAGGTTGGGTCGGCTTTGAAAACAGGATTCTGGACGATGGTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTCTTGTTTCACCACCAACAAAATGTGAATCTGAGAAGG CCCAGTG ATGGAGTTC TGATATTTATATCATTGTTGATTTGGGAATAGACGTAACCCCTATTGTGGTTAGATTCTGTTCTTGAAGTGTAATATGATGGCAACTGTAACATGAGGATTACATCTTGAAGTAAATGTACAAATTAGTTCACGTTTGAGCCTTTTCGTGTAACCTAAAACAATGAGTGGAGAATTGTATTAATACATGAGATTTGGACTGAAGTTTCTGAATACAATAGTTGGACACTATTCTTTAT ]
[+] EMBL CF324795 [ CTCTCTTTCTCGTTGCGATTTGAGAATTCACCTTCTTCTTCCTCCTCTCGCCTCCTACCTCTTGCTGCAGCGCACGGCGCCGCGCCGTCATCTCGTGCTTGTATCCTTGTTCTTCATCTTCTCTCACCTTCCCTTGAGAAGATTTGTTATTACTAGTTTAATATTTCTAGGAAAGAGGAGAAGAGGAGAGGAGAGGAGAGGGTGG ]
[+] EMBL CF325961 [ TTTGTTATTACTAGTTTAATATTTCTAGGAAAGAGGAGAAGAGGAGAGGAGAGGAGAGGGTGGTAACGCAGCGTTAGGTGGGGGCGTGCTAGGGAGTCAAGAACAGAAGGAAGGGAGGCCCAACTGCTCCATCCTCCCTTTCCCCAAATCCACTCCTTCCTTTCGATTTGCCTCCTTCCTTCCTTGGTTCATTCATTGATTTTTGCACCGCATTTGAGGAAGAATGTGCCCGCTGAGGGTGATCCTAATCTTCCTCTCCGCCACCATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCGACCTCCACGACGATGCCGACGCCTCCGAATCCCCAAGGGAAAGGCCCCCCGTGCCCCTCCATTCCAAGGTTGGGTCGGCTTTGAAAACAGGATTCTGGACGATGGTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTCTTGTTT ACCACCAACAAAATGTGAATCTGAGAAGG CCCAGTG ATGGAGTTC TGATATTTATATC ]
[-] EMBL CA305705 [ AACGCAGCGTTAGGTGGGGGCGTGCTAGGGAGTCAAGAACAGAAGGAAGGGAGGCCCAACTGCTCCATCCTCCCTTTCCCCAAATCCACTCCTTCCTTTCGATTTGCCTCCTTCCTTCCTTGGTTCATTCATTGATTTTTGCACCGCATTTGAGGAAGAATGTGCCCGCTGAGGGTGATCCTAATCTTCCTCTCCGCCACCATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCGACCTCCACGACGATGCCGACGCCTCCGAATCCCCAAGGGAAAGGCCCCCCGTGCCCCTCCATTCCAAGGTTGGGTCGGCTTTGAAAACAGGATTCTGGACGATGGTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTCTTGTTTCACCACCAACAAAATGTGAATCTGAGAAGG CCCAGTG ATGGAGTTC TGATATTTATATCATTGTTGATTTGGGAATAGACGTAACCCCTATTGTGGTTAGATTCTGTTCTTGAAGTGTAATATGATGGCAACTGTAACATGAGGATTACATCTTGA ]
[+] EMBL CA753129 [ GTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTCTTGTTTCACCACCAACAAAATGTGAATCTGAGAAGG CCCAGTG ATGGAGTTC TGATATTTATATCATTGTTGATTTGGGAATAGACGTAACCCCTATTGTGGTTAGATTCTGTTCTTGAAGTGTAATATGATGGCAACTGTAACATGAGGATTACATCTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCCTTTTCGTGTAACCTAAAACAATGAGTGGAGAATTGTATTAATACATGAGATTTGGACTGAAaaaaaa ]
[+] EMBL AU058091 [ ACCACCAACAAAATGTGAATCTGAGAAGGCCCCAGTGAATGGAGTTCNTGATATTTATATCATTGTTGATTTGGGAATAGACGTAACCCCTATTGTGGTTAGATTCTGTTCTTGAAGTGTAATATGATGGCAACTGTAACATGAGGATTACATCTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCCTTTTCGTGTAACCTAAAACAATGAGTGGAGAATTGTATTAATACATGAGATTTGGACTGAAGTTTCTGAATACAATAGTTGGACACTANTCTTTATTTTCCTGTTGAAAAA]
consensusID : consensus_10994#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 761 fasta sequence
[TTCTAGGCCTTAGGAGAAGAGGAGAGGAGAGGAGAGGGTGGTAACGCAGCGTTAGGTGGGGGCGTGCTAGGGAGTCAAGAACAGAAGGAAGGGAGGCCCAACTGCTCCATCCTCCCTTTCCCCAAATCCACTCCTTCCTTTCGATTTGCCTCCTTCCTTCCTTGGTTCATTCATTGATTTTTGCACCGCATTTGAGGAAGAATGTGCCCGCTGAGGGTGATCCTAATCTTCCTCTCCGCCACCATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCGACCTCCACGACGATGCCGACGCCTCCGAATCCCCAAGGGAAAGGCCCCCCGTGCCCCTCCATTCCAAGGTAATCAAACCAAAAAAAGGGGAAAAAAAACCATTCTTTCTTGGTCGCTCCATACTATTCTTGGGTTAGGTTACCTCACACACACGTTTCATGACATCCCTTGCTAGAGGACTAACGCTTCAATTCTACTGCTTAATTCCTGCTACGAGCCCCATGTACCCCGTCTCATATGGCAAATCACAACATTGTCTTGTCTTTGACTTCTAGTTTGCTGTTGCTGGATATGGAAGCTAGCGATTCTAGGAATGCTTTCTTCTTACGGCTGAAAAAAAAGAAATCTTCTAGCTAACTTTCCTATGAAAGGGGACGAAAATCATGTGCTTTGGAAATGTTTCTGGCATATGCCTAATTTTCAGATAAATCACAACCATATGTTTCTTTTTAGTGCACACAACATGTTCTCTCTT]
[+] EMBL CB634861 [TTCTAGGCCTTAGGAGAAGAGGAGAGGAGAGGAGAGGGTGGTAACGCAGCGTTAGGTGGGGGCGTGCTAGGGAGTCAAGAACAGAAGGAAGGGAGGCCCAACTGCTCCATCCTCCCTTTCCCCAAATCCACTCCTTCCTTTCGATTTGCCTCCTTCCTTCCTTGGTTCATTCATTGATTTTTGCACCGCATTTGAGGAAGAATGTGCCCGCTGAGGGTGATCCTAATCTTCCTCTCCGCCACCATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCGACCTCCACGACGATGCCGACGCCTCCGAATCCCCAAGGGAAAGGCCCCCCGTGCCCCTCCATTCCAAGGTAATCAAACCAAAAAAAGGGGAAAAAAAACCATTCTTTCTTGGTCGCTCCATACTATTCTTGGGTTAGGTTACCTCACACACACGTTTCATGACATCCCTTGCTAGAGGACTAACGCTTCAATTCTACTGCTTAATTCCTGCTACGAGCCCCATGTACCCCGTCTCATATGGCAAATCACAACATTGTCTTGTCTTTGACTTCTAGTTTGCTGTTGCTGGATATGGAAGCTAGCGATTCTAGGAATGCTTTCTTCTTACGGCTGAAAAAAAAGAAATCTTCTAGCTAACTTTCCTATGAAAGGGGACGAAAATCATGTGCTTTGGAAATGTTTCTGGCATATGCCTAATTTTCAGATAAATCACAACCATATGTTTCTTTTTAGTGCACACAACATGTTCTCTCTT]
consensusID : consensus_10994#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence
[TTATAGCGGAAGAAGATTTTTTCTTCAGGGTGGAGCGCATCAGAACGCCGTACGTACCACCTACGAATAATAGGTAGCCCCACCCCAGACAGAGTTTGTGAGCCGTGTAATTGGCGACCATTTTGCGCGGTTTGGGTCAGATAGCAAGCGAATCGTCCTATATCGCGGAAGCTGGATTATTACGGGCCATATTTGGTTTTGAGCCCCAGTTTTTGTTCCAGTGTTGAATCTTTTGATGTATGTAGTAAAAATGGGTGCTGGCATCATATTTTCATGCTTCCTAACCAAGGTACAGCATAATATTGGATTTTATTTTGTTGCTTGCCACATAACTTTTTTTTTATTGAAGTATAATTTTGCATGAAACTGTAGGTTGGGTCGGCTTTGAAAACAGGATTTTGGACGATGGTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTTTTGTTTCACCCCCAACAAAATGTGAATTTGAGAAGGCCCAGTGATGGAGTTTTGATATTTATATCATTGTTGATTTGGGAATAGACGTAACCCCTATTGTGGTTAGATTTTGTTTTTGAAGTGTAATATGATGGCAACTGTAACATGAGGATTACATTTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCCTTTTTGTGTAACCTAAAACAATGAGTGGAGAATTGTATTAATACATGAGATTTGGGCTGAAAAAAAAAAAG]
[-] EMBL CB634862 [TTATAGCGGAAGAAGATTTTTTCTTCAGGGTGGAGCGCATCAGAACGCCGTACGTACCACCTACGAATAATAGGTAGCCCCACCCCAGACAGAGTTTGTGAGCCGTGTAATTGGCGACCATTTTGCGCGGTTTGGGTCAGATAGCAAGCGAATCGTCCTATATCGCGGAAGCTGGATTATTACGGGCCATATTTGGTTTTGAGCCCCAGTTTTTGTTCCAGTGTTGAATCTTTTGATGTATGTAGTAAAAATGGGTGCTGGCATCATATTTTCATGCTTCCTAACCAAGGTACAGCATAATATTGGATTTTATTTTGTTGCTTGCCACATAACTTTTTTTTTATTGAAGTATAATTTTGCATGAAACTGTAGGTTGGGTCGGCTTTGAAAACAGGATTTTGGACGATGGTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTTTTGTTTCACCCCCAACAAAATGTGAATTTGAGAAGGCCCAGTGATGGAGTTTTGATATTTATATCATTGTTGATTTGGGAATAGACGTAACCCCTATTGTGGTTAGATTTTGTTTTTGAAGTGTAATATGATGGCAACTGTAACATGAGGATTACATTTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCCTTTTTGTGTAACCTAAAACAATGAGTGGAGAATTGTATTAATACATGAGATTTGGGCTGAAAAAAAAAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10994#0 GCCAAATCCCATCTCCATTTTCCTCTCTTTCTCGTTGCGATTTGAGAATTCACCTTCTTC 60
consensus_10994#1 ------------------------------------------------------------
consensus_10994#2 ------------------------------------------------------------
consensus_10994#0 TTCCTCCTCTCGCCTCCTACCTCTTGCTGCAGCGCACGGCGCCGCGCCGTCATCTCGTGC 120
consensus_10994#1 ------------------------------------------------------------
consensus_10994#2 ------------------------------------------------------------
consensus_10994#0 TTGTATCCTTGTTCTTCATCTTCTCTCACCTTCCCTTGAGAAGATTTGTTATTACTAGTT 180
consensus_10994#1 ------------------------------------------------------------
consensus_10994#2 --------------------------------------------------TTATAGCGGA 10
consensus_10994#0 TAATATTTCTAGGAAAGAGGAGAAGAGGAGAGGAGAGGAGAGGGTGGTAACGCAGCGT-- 238
consensus_10994#1 ------TTCTAGGCCTTAGGAGAAGAGGAGAGGAGAGGAGAGGGTGGTAACGCAGCGT-- 52
consensus_10994#2 AGAAGATTTTTTCTTCAGGGTGGAGCGCATCAGAACGCCGTACGTACCACCTACGAATAA 70
** * ** * ** * * ** * * ** * * * *
consensus_10994#0 TAGGTGGGGGCGTGCTAGGGAG---TCAAGAACAGAAGGAAGGGAGGCCCAACTGCTCCA 295
consensus_10994#1 TAGGTGGGGGCGTGCTAGGGAG---TCAAGAACAGAAGGAAGGGAGGCCCAACTGCTCCA 109
consensus_10994#2 TAGGTAGCCCCACCCCAGACAGAGTTTGTGAGCCGTGTAATTGGCGACCATTTTGCGCGG 130
***** * * * ** ** * ** * * * ** * ** *** *
consensus_10994#0 TCCTCCCTTTCCCCAAATCCACTCCTTCCTT-TCGATTTGCCTCCTTCCTTCCTTGGTTC 354
consensus_10994#1 TCCTCCCTTTCCCCAAATCCACTCCTTCCTT-TCGATTTGCCTCCTTCCTTCCTTGGTTC 168
consensus_10994#2 TTTGGGTCAGATAGCAAGCGAATCGTCCTATATCGCGGAAGCTGGATTATTAC--GGGCC 188
* ** * * ** * * * *** ** * ** * ** *
consensus_10994#0 ATTCATTGATTTTTGCACC-GCATTTGAGGAAGAAT-GTGCCCGCTGAGGGTGATCCTAA 412
consensus_10994#1 ATTCATTGATTTTTGCACC-GCATTTGAGGAAGAAT-GTGCCCGCTGAGGGTGATCCTAA 226
consensus_10994#2 ATATTTGGTTTTGAGCCCCAGTTTTTGTTCCAGTGTTGAATCTTTTGATGTATGTAGTAA 248
** * * *** ** ** * **** ** * * * *** * * ***
consensus_10994#0 TCTTCCTCTCCGCCACCATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCG 472
consensus_10994#1 TCTTCCTCTCCGCCACCATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCG 286
consensus_10994#2 AAATGGGTGCTGGCATCATATTTTCATGCTTCCTAACCAAGG--TACAGCAT-AATATTG 305
* * * ** *** ** ****** * * ** ** * ** *
consensus_10994#0 ACCTCCACGACGATGCCGACGCCTCCGAATCCCCAAGGGAAAGGCCCCCCGTGCCCCTCC 532
consensus_10994#1 ACCTCCACGACGATGCCGACGCCTCCGAATCCCCAAGGGAAAGGCCCCCCGTGCCCCTCC 346
consensus_10994#2 GATTTTATTTTGTTGCTTGCCACATAACTTTTTTTTTATTGAAGTATAATTTTGCATGAA 365
* * * *** * * * * * * *
consensus_10994#0 ATTCCAAGGTTGGGTCGGCTTTGAAAACAGGATTCTGGACGAT--------GGTGG---- 580
consensus_10994#1 ATTCCAAGGT-AATCAAACCAAAAAAAGGGGAAAAAAAACCATTCTTTCTTGGTCGCTCC 405
consensus_10994#2 ACTGTAGGTTGGGTC-GGCTTTGAAAACAGGATTTTGGACGAT--------GGTGG---- 412
* * * * * * **** *** ** ** *** *
consensus_10994#0 ACATGGCAAGTGGGAAA---TACCTTTGGCGCAC-TCTTGTTTCACCACCAACAAAATGT 636
consensus_10994#1 ATACTATTCTTGGGTTAGGTTACCTCACACACACGTTTCATGACATCCCTTGCTAGAGGA 465
consensus_10994#2 ACATGGCAAGTGGGAAA---TACCTTTGGCGCAC-TTTTGTTTCACCCCCAACAAAATGT 468
* * **** * ***** * *** * * * ** * * * * * *
consensus_10994#0 GAATCTGAGAAGGCCCAGTGATGGAGTTCTGATATT-------TATATCATTGTTGATTT 689
consensus_10994#1 CTAACGCTTCAATTCTACTGCTTAATTCCTGCTACGAGCCCCATGTACCCCGTCTCATAT 525
consensus_10994#2 GAATTTGAGAAGGCCCAGTGATGGAGTTTTGATATT-------TATATCATTGTTGATTT 521
* * * * ** * * * ** ** * ** * * ** *
consensus_10994#0 GGGAATAGACGTAACCCCTATTGTGGTTAGATTCTGTTCTTGAAGTGTAATATGATGGCA 749
consensus_10994#1 GGCAAATCACA-ACATTGTCTTGTCTTTGACTTCTAGTTTGCTGTTGCTGGAT-ATGGAA 583
consensus_10994#2 GGGAATAGACGTAACCCCTATTGTGGTTAGATTTTGTTTTTGAAGTGTAATATGATGGCA 581
** ** ** * * **** ** ** * * * ** ** **** *
consensus_10994#0 ACT-GTAACATGAGGATTACATCTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCC- 807
consensus_10994#1 GCTAGCGATTCTAGGAATGCTTTCTTCT-TACGGCTGAAAAAAAAGAAATCTTCTAGCTA 642
consensus_10994#2 ACT-GTAACATGAGGATTACATTTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCC- 639
** * * **** * * * * ** * **** * * ** ***
consensus_10994#0 -TTTTCGTGTAACCTAAAACAATGAGTGGAGAATTGTATTAATACATGAGATTTGGACTG 866
consensus_10994#1 ACTTTCCTATGAAAGGGGACGA-AAATCATGTGCTTTGGAAATGTTTCTGGCATATGCCT 701
consensus_10994#2 -TTTTTGTGTAACCTAAAACAATGAGTGGAGAATTGTATTAATACATGAGATTTGGGCTG 698
*** * * * ** * * * * * * *** * * * *
consensus_10994#0 AAGTTTCTGA-ATACAATAGTTGGACACTATTCTTTATTTTCCTGTTGAAAAA------- 918
consensus_10994#1 AATTTTCAGATAAATCACAACCATATGTTTCTTTTTAGTGCACACAACATGTTCTCTCTT 761
consensus_10994#2 AAAAAAAAAAAG------------------------------------------------ 710
** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||