These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10998#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 971 fasta sequence [ATGGTGCTATGAATAAAAAGAATGAAATGTGGGAACCCCAGCAAAATAGTGCAAGCTCCTAAAATTNTGCTNGCCAAGTGACATACTATCTGGATACCCTCCTCTTCCACACTTCTTTACCACCGCTCTGTTAGTGCGCTAAGCTGGAGCGAGTTCAGTCTCCCTTCAACAAGTTAAAATTATGCTATCTGAATACCCTGCTCTTCCACACATTTTACCACCGCTGTGCTAATAAGCTGGAGTGTGAGTTCAGTCTCTCCCTCCAACGACAAGTTAAAATTATCTTGAGAATTGCTGCAGCTGTATGATCACAATGCTGATATCGTCAGTCGAGCCCCTAGTAACCGCAGTTTCGACGAGCCTCCTGCAAGCAGTCATGCGAGAAGCTTTGTCGTTGCTGATGTAAAGCGGCCTGGCAATGTCAACTGCCTCCTGGTTCTCCACCTTGTCCCACAAACCATCAGAGGCAAGAATCAAGAATTCGCACTGCGAATCAACACCCAGAGTTGTGGTGTCTGGATCAGACACCA-CCCACTGCTTGAGGTGTGCATC--ACCGATGCCTCTTGACACTGCTAAGGATCCCTGAACTCG-CCATGTTCCTCGGTAATTCACCACGAATCCACCC-AGATTCTCAATTCTTTCCCTCTCATCCTCGCGCGAGGCCCGGTGATCAGAGGTGAGCGCCTCTGCCTTCCCGGCGCGGCTGAGCACGGCACGGCAATCTCCGGCATTAGACACAACGAGGCCACCTTTCTGCAGCAAAGCGGTGACGCAGCAGGCGCCCCCGCTCTCCTCCCTCTTGAGGAATTCCTCGTCCGTCTTCAGGTAGCACCGCTTCACTGCCTGTTCAGTCTCGCCACTGTCGCCGCCGTCCACCTTGCACATCTCCTCGGCCATGAACTTGGGCATGTTCTCGGCGACGAACTCCGCCGCGCTCTTCCCGCCGTGGCCATCGAATACACCAAAAAAGG] [-] EMBL CA754962 [ATGGTGCTATGAATAAAAAGAATGAAATGTGGGAACCCCAGCAAAATAGTGCAAGCTCCTAAAATTNTGCTNGCCAAGTGACATACTATCTGGATACCCTCCTCTTCCACACTTCTTTACCACCGCTCTGTTAGTGCGCTAAGCTGGAGCGAGTTCAGTCTCCCTTCAACAAGTTAAAATTATGCTATCTGAATACCCTGCTCTTCCACACATTTTACCACCGCTGTGCTAATAAGCTGGAGTGTGAGTTCAGTCTCTCCCTCCAACGACAAGTTAAAATTATCTTGAGAATTGCTGCAGCTGTATGATCACAATGCTGATATCGTCAGTCGAGCCCCTAGTAACCGCAGTTTCGACGAGCCTCCTGCAAGCAGTCATGCGAGAAGCTTTGTCGTTGCTGATGTAAAGCGGCCTGGCAATGTCAACTGCCTCCTGGTTCTCCACCTTGTCCCACAAACCATCAGAGGCAAGAATCAAGAATTCGCACTGCGAATCAACACCCAGAGTTGTGGTGTCTGGATCAGACACCA CCCACTGCGTGAGGTGTGCATC ACCGATGCCTCTTGACACTGCTAAGGATCCCTGAACTCG CCATGTTCCTCGGTAATTCACCA ] [-] EMBL AA751848 [ GCGAGTTCAGTCTCCCTTCAACAAGTTAAAATTATGCTATCTGAATACCCTGCTCTTCCACACATTTTACCACCGCTGTGCTAATAAGCTGGAGTGTGAGTTCAGTCTCTCCCTCCAACGACAAGTTAAAATTATCTTGAGAATTGCTGCAGCTGTATGATCACAATGCTGATATCGTCAGTCGAGCCCCTAGTAACCGCAGTTTCGACGAGCCTCCTGCAAGCAGTCATGCGAGAAGCTTTGTCGTTGCTGATGCAAAGCGGCCTGGCAATGTCAACTGCCTCCTGGTTCTCCACCTTGTCCCACAAACCATCAGAGGCAAGAATCAAGAATTCGCACTGCGAATCAACACCCAGAGTTGTGGTGTCTGGATCAGACACCN CCCACTGCTTGAGGTGTGC TCGTGCCGATt ] [-] EMBL CF313116 [ AACCATCAGAGGCAAGAATCAAGAATTCGCACTGCGAATCAACACCCAGAGTTGTGGTGTNTGGATCAGACACCACCCCACTGCTTGAGGTGTGCATC ACCGATGCCTCTTGACACTGCTAAGGATCCCTGAACTCG CCATGTTCCTCGGTAATTCACCACGAATCCACCC AGATTCTCAATTCTTTCCCTCTCATCCTCGCGCGAGGCCCGGTGATCAGAGGTGAGCGCCTCTGCCTTCCCGGCGCGGCTGAGCACGGCACGGCAATCTCCGGCATTAGACACAACGAGGCCACCTTTCTGCAGCAAAGCGGTGACGCAGCAGGCGCCCCCGCTCTCCTCCCTCTTGAGGAATTCCTCGTCCGTGTTCAGGTAGCACCGCTTCACTGCCTGTT ] [-] EMBL CF196590 [ nnnanCA CCCACTGCTTGAGGTGTGCATC ACCGATGCCTCTTGACACTGCTAAGGATCCCTGAACTCG CCATGTTCCTCGGTAATTCACCACGAATCCACCC AGATTCTCAATTCTTTCCCTCTCATCCTCGCGCGAGGCCCGGTGATCAGAGGTGAGCGCCTCTGCCTTCCCGGCGCGGCTGAGCACGGCACGGCAATCTCCGGCATTAGACACAACGAGGCCACCTTTCTGCAGCAAAGCGGTGACGCAGCAGGCGCCCCCGCTCTCCTCCCTCTTGAGGAATTCCTCGTCCGTCTTCAGGTAGCACCGCTTCACTGCCTGTTCAGTCTCGCCACTGTCGCCGCCGTCCACCTTGCACATCTCCTCGGCCATGAACTTGGGCATGTTCTCGGCGACGAACTCCGCCGCGCTCTTCCCGCCGTGGCCATCGAATACACCAAAAAAGG] [-] EMBL OSR28491A [ ttCTTGAGGTGTGAATC ACCGATGCCTCTTGAAACTGCTAAGGATCCCTGAACTCGCCCATGTCCCTGGGTAATTCACCACGAATCAACCCAAGATTCTNAATTC TTCCCTCTCATCCTCGCGCGAGNCCCGNTGATCAGAGGTGAGCGCCTCTGCCTTCCCGGCGCGGCTGAGCACGGCACGGCAATCTCCGGCATTAGACACAACGAGGCCACCTTTCTGCAGCAAAGCGGTGACGCAGCAGGCGCCCCCGCNCTCCTCCCTCTTGAGGAATTCCTCGTCCGTCTTCAGGTAGCACCGCTTNACTGCCTGTTCAGTCTCGCCACTGTCGCCGCCGTCCACCTTGCACATCTCCTCGGCCATGAACTTGGGCATGTTCTCGGCGACGAACTCCGCCGCGCTCTTCCCGCCGTGG ] consensusID : consensus_10998#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 767 fasta sequence [GCACGAGGAGAGAGAGAGAGAGAGAGAACTAGTCTCGGTTTTTTTTTTTTTTTTTTTAAATATTAAAGGATATCTTAAGCTGCTGTGTATTGAATCAATTAAAATCTCAGAGAAACTATCCATACCAACTAACCATGTACAGAGGCAAATAGTAGCCTTACAGTATGAGGTGAGTAGTAACTCGCCTTATTACATTAGAATCAAAGAATGAATTGAATCAGTTTACAGAAAGAATGGTGCTATGAATAAAAAGAATTGAATGTTGGAACCCCAACAAAATAGTGCAAGCTCCTAAAATTTTGCTTGCCAAGTGACATACTATCTGAATACCCTCCTCTTCCACACTTCTTTACCACCGCTCTGTTAGTGCGCTAAGCTGGAGCGAGTTCAGTCTCCCTTCAACAAGTTAAAATTAT-GCTATCTGAATACCCTGCT-CTTCCACACAATTT-ACCACCGCTGTGCTAATAAGCTGGAGTGTGAGTTCAGTCTCTCCCTCCAACGACAAGTTAAAAATATTCTTGAGAAATTGCTTGCACTTGTATGATCAACAATGCTTGATATTGTCAGACGAAGCCCCTATTAACCGCAGTTTTCGACCAGCCTCCCTGCAGCATTCTAGCCAGAAACTATTTTCTTGCTTATGTATATAGGGCTGGGAAATGAACTGTTCTCCTGTTTCTACCTTTGCCCACAACCTCTAAGGGGAATATAAAATTCCCTGGAATACACCCCAGTTGGGTGTGGACACACACCCCCTGAGGTGGGTA] [+] EMBL AW155401 [GCACGAGGAGAGAGAGAGAGAGAGAGAACTAGTCTCGGTTTTTTTTTTTTTTTTTTTAAATATTAAAGGATATCTTAAGCTGCTGTGTATTGAATCAATTAAAATCTCAGAGAAACTATCCATACCAACTAACCATGTACAGAGGCAAATAGTAGCCTTACAGTATGAGGTGAGTAGTAACTCGCCTTATTACATTAGAATCAAAGAATGAATTGAATCAGTTTACAGAAAGAATGGTGCTATGAATAAAAAGAATTGAATGTTGGAACCCCAACAAAATAGTGCAAGCTCCTAAAATTTTGCTTGCCAAGTGACATACTATCTGAATACCCTCCTCTTCCACACTTCTTTACCACCGCTCTGTTAGTGCGCTAAGCTGGAGCGAGTTCAGTCTCCCTTCAACAAGTTAAAATTAT GCTATCTGAATACCCTGCT CTTCCACACAATTT ACCACCGCTGTGCTAATAAGCTGGAGTGTGAGTTCAGTCTCTCCCTCCAACGACAAGTTAAAAATATTCTTGAGAAATTGCTTGCACTTGTATGATCAACAATGCTTGATATTGTCAGACGAAGCCCCTATTAACCGCAGTTTTCGACCAGCCTCCCTGCAGCATTCTAGCCAGAAACTATTTTCTTGCTTATGTATATAGGGCTGGGAAATGAACTGTTCTCCTGTTTCTACCTTTGCCCACAACCTCTAAGGGGAATATAAAATTCCCTGGAATACACCCCAGTTGGGTGTGGACACACACCCCCTGAGGTGGGTA] [-] EMBL AU031959 [ ttttTATTAAAGGATATCTTAAGCTGCTGTGTATTGAATCAATTAAAATCTCAGAGAAACTATCCATACCAACTAACCATGTACAGAGGCAAATAGTAGCCTTACAGTATGAGGTGAGTAGTAACTCGCCTTATTACATTAGAATCAAAGAATGAATTGAATCAGTTTACAGAAAGAATGGTGCTATGAATAAAAAGAATTGAATGTTGGAACCCCAGCAAAATAGTGCAAGCTCCTAAAATTTTGCTTGCCAAGTGACATACTATCTG ATACCCTCCTCTTCCACACTTCTTTACCACCGGTCTGTTAGTGCGCTAAGCTGGAGCGAGTTCAGTCTCCCTTCAACAAGTNAAAATTATGGCTATCTGAATACCCTGGTCCTTCCACACAATTTNACCACCGCTGGGCNAATAAGCTGGAGTtgg ] consensusID : consensus_10998#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence [TTTTTTTTTTTTTGACTGTTATATTTTTTTTTTTAAAAAAAATTGAATGTTGGAACCCCAACAAAATAGTGCAAGCTTCTAAAATTTTGGTTGACGAGGGACATACATATCTGAATACCCTCCTTTTCCACACTTTTTTACCACCGGTCTGTTGTTGCCCTAAACTGGAGCGAGTTCAGTCTCCCTTCAACAGGTGAAAATTATGCTGTTTGAATACCCTGCTCTTCCCACATTTTACCACCCCTGTGCTAATAACCCG] [+] EMBL CF313117 [TTTTTTTTTTTTTGACTGTTATATTTTTTTTTTTAAAAAAAATTGAATGTTGGAACCCCAACAAAATAGTGCAAGCTTCTAAAATTTTGGTTGACGAGGGACATACATATCTGAATACCCTCCTTTTCCACACTTTTTTACCACCGGTCTGTTGTTGCCCTAAACTGGAGCGAGTTCAGTCTCCCTTCAACAGGTGAAAATTATGCTGTTTGAATACCCTGCTCTTCCCACATTTTACCACCCCTGTGCTAATAACCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10998#1 GCACGAGGAGAGAGAGAGAGAGAGAGAACTAGTCTCGGTTTTTTTTTTTTTTTTTTTAAA 60 consensus_10998#2 ------------------------------------------------------------ consensus_10998#0 ------------------------------------------------------------ consensus_10998#1 TATTAAAGGATATCTTAAGCTGCTGTGTATTGAATCAATTAAAATCTCAGAGAAACTATC 120 consensus_10998#2 ------------------------------------------------------------ consensus_10998#0 ------------------------------------------------------------ consensus_10998#1 CATACCAACTAACCATGTACAGAGGCAAATAGTAGCCTTACAGTATGAGGTGAGTAGTAA 180 consensus_10998#2 ------------------------------------------------------------ consensus_10998#0 ------------------------------------------------------------ consensus_10998#1 CTCGCCTTATTACATTAGAATCAAAGAATGAATTGAATCAGTTTACAGAAAGAATGGTGC 240 consensus_10998#2 ---------------------------------TTTTTTTTTTTTTGACTGTTATATTTT 27 consensus_10998#0 -----------------------------------------------------ATGGTGC 7 ** * consensus_10998#1 TATGAATAAAAAGAATTGAATGTTGGAACCCCAACAAAATAGTGCAAGCTCCTAAAATTT 300 consensus_10998#2 TTTTTTTAAAAAAAATTGAATGTTGGAACCCCAACAAAATAGTGCAAGCTTCTAAAATTT 87 consensus_10998#0 TATGAATAAAAAGAATGAAATGTGGGAACCCCAGCAAAATAGTGCAAGCTCCTAAAATTN 67 * * ****** *** ***** ********* **************** ******** consensus_10998#1 TGCTTGCCAAGTGACATAC-TATCTGAATACCCTCCTCTTCCACACTTCTTTACCACCGC 359 consensus_10998#2 TGGTTGACGAGGGACATACATATCTGAATACCCTCCTTTTCCACACTTTTTTACCACCGG 147 consensus_10998#0 TGCTNGCCAAGTGACATAC-TATCTGGATACCCTCCTCTTCCACACTTCTTTACCACCGC 126 ** * * * ** ******* ****** ********** ********** ********** consensus_10998#1 TCTGTTAGTGCGCTAAGCTGGAGCGAGTTCAGTCTCCCTTCAACAAGTTAAAATTATGCT 419 consensus_10998#2 TCTGTTGTTGCCCTAAACTGGAGCGAGTTCAGTCTCCCTTCAACAGGTGAAAATTATGCT 207 consensus_10998#0 TCTGTTAGTGCGCTAAGCTGGAGCGAGTTCAGTCTCCCTTCAACAAGTTAAAATTATGCT 186 ****** *** **** **************************** ** *********** consensus_10998#1 ATCTGAATACCCTGCTCTTCCACACAATTTACCACCGCTGTGCTAATAAGCTGGAGTGTG 479 consensus_10998#2 GTTTGAATACCCTGCTCTTCC-CACATTTTACCACCCCTGTGCTAATAACCCG------- 259 consensus_10998#0 ATCTGAATACCCTGCTCTTCCACACATTTTACCACCGCTGTGCTAATAAGCTGGAGTGTG 246 * ****************** **** ********* ************ * * consensus_10998#1 AGTTCAGTCTCTCCCTCCAACGACAAGTTAAAAATATTCTTGAGAAATTGCTTGCACTTG 539 consensus_10998#2 ------------------------------------------------------------ consensus_10998#0 AGTTCAGTCTCTCCCTCCAACGACAAGTTAAAATTAT-CTTGAGAA-TTGCT-GCAGCTG 303 consensus_10998#1 TATGATCAACAATGCTTGATATTGTCAGACGAAGCCCCTATTAACCGCAGTTTTCGACCA 599 consensus_10998#2 ------------------------------------------------------------ consensus_10998#0 TATGATCA-CAATGCT-GATATCGTCAGTCGA-GCCCCTAGTAACCGCAGTTT-CGACGA 359 consensus_10998#1 GCCTCCCTGCAGCATTCTAGCCAGAAACTATTTTCTTGCTTATGTATATAGGGCTGGGAA 659 consensus_10998#2 ------------------------------------------------------------ consensus_10998#0 GCCTCCTGCAAGCAGTCATGCGAGAAGCTTTGTCGTTGCTGATGTAAAGCGGCCTGGCAA 419 consensus_10998#1 -ATGAACTGTTCTCCTGTT-TCTACCTTTGCCCACAACCTCTAAGGGG----AATATAAA 713 consensus_10998#2 ------------------------------------------------------------ consensus_10998#0 TGTCAACTGCCTCCTGGTTCTCCACCTTGTCCCACAAACCATCAGAGGCAAGAATCAAGA 479 consensus_10998#1 ATTC---CCTGGAAT--ACACCCCA----GTTGGGTGTGGA--------CACACACCCCC 756 consensus_10998#2 ------------------------------------------------------------ consensus_10998#0 ATTCGCACTGCGAATCAACACCCAGAGTTGTGGTGTCTGGATCAGACACCACCCACTGCT 539 consensus_10998#1 TGAGGTGGGTA------------------------------------------------- 767 consensus_10998#2 ------------------------------------------------------------ consensus_10998#0 TGAGGTGTGCATCACCGATGCCTCTTGACACTGCTAAGGATCCCTGAACTCGCCATGTTC 599 consensus_10998#1 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#0 CTCGGTAATTCACCACGAATCCACCCAGATTCTCAATTCTTTCCCTCTCATCCTCGCGCG 659 consensus_10998#1 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#0 AGGCCCGGTGATCAGAGGTGAGCGCCTCTGCCTTCCCGGCGCGGCTGAGCACGGCACGGC 719 consensus_10998#1 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#0 AATCTCCGGCATTAGACACAACGAGGCCACCTTTCTGCAGCAAAGCGGTGACGCAGCAGG 779 consensus_10998#1 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#0 CGCCCCCGCTCTCCTCCCTCTTGAGGAATTCCTCGTCCGTCTTCAGGTAGCACCGCTTCA 839 consensus_10998#1 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#0 CTGCCTGTTCAGTCTCGCCACTGTCGCCGCCGTCCACCTTGCACATCTCCTCGGCCATGA 899 consensus_10998#1 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#0 ACTTGGGCATGTTCTCGGCGACGAACTCCGCCGCGCTCTTCCCGCCGTGGCCATCGAATA 959 consensus_10998#1 ------------ consensus_10998#2 ------------ consensus_10998#0 CACCAAAAAAGG 971 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||