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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 965 fasta sequence
[GCGAGCTAGCTGCTTCTACAACTGTGCAGGTAGCTAATTAATCTAGCAATCCTCCCGTAGATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAAGCTGACTTCGCCGACGACGACGACGTGGAGGCGCA-CTCACTTCGTACCACACCGGCGCCTCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCCATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGCCAGCTACCCGGACATC-GGCCA-GTACGCCTTCGGGGCCACCGGCAGGAGAGCCGTCGCATTCTTCATGTACGTCGAGCTCT-ACCTCGTCGCCATAAGCTTCCTCGTCCTCGA-GGGCGACAATCTCGACAAGCTCTTCCCCGGCGC-AACCATGGAGATTCTTGGCTA-CCAGC-TCCAC-GGCAAGCAGCTATTCATTGTCTCGCCGCCGCCGCATACTGCCACTACTTGCTCAAAANTTTGCATGCTTGCTACGTGTAGCGGCCGGCTCATCGCTCGTGGCCTGGACGCGTCCTATATTGGGCGTGTGCCAGACCGGTCCAACGACAGAACCTTAACTTCCGAATCCACCTCTTGGTTTATTGGTGTTACCGGCACCGTTCCACGTTATTCTCTAAAACGAACTTTTCAATCTGTGTCTTGCTGGCCTAATCGGCACGGGGTGGTAATATAGGATTGGCNGGACTACTCTCGACTACAAACTATAACTGACCTGAACCTTTGGCTCAGGTGGAATTTTGAGGGGCAAGTATACTGACACCTACCCGATCTAGGATAGTATTTCTCTAATCATGAAAAAGAGTAATATTACAGTTTACTATACCTACNN]
[+] EMBL AU056548 [GCGAGCTAGCTGCTTCTACAACTGTGCAGGTAGCTAATTAATCTAGCAATCCTCCCGTAGATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAAGCTGACTTCGCCGACGACGACGACGTGGAGGCGCA CTCACTTCGTACCACACCGGCGCCTCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCCATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGCCAGCTACCCGGACATC GGCCANNTACGCCTTCGGGGCCACCGGCAGGAGAGCCGTCGCATTCTTCATGTACGTCGAGCTCT ACCTCGTCGCCATAAGCTTCCTCGTCCTCGA GGGCGACAATCTCGACAAGCTCTTCCCCGGCGC AACCATGGAGATTCTTGGCTA CCAGC TCCAC GGCAAGCAGCTATTCATT ]
[+] EMBL AW155174 [ AGCTAGCTGCTTCTACAACTGTGCAGGTAGCTAATTAATCTAGCAATCCTCCCGTAGATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAAGCTGACTTCGCCGACGACGACGACGTGGAGGCGCAGCTCACTTCGTACCACACCGGCGCCTCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCCATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGCCAGCTACCCGGACATC GGCCA GTACGCCTTCGGCGCCACCGGCAGGAGAGCCGTCGCATTCTTCATGTACGTCGAGCTCT ACCTCGTCGCCATAAGCTTNCTCGTCCTCGAGGGGCGAC ATCTCGACNAGCTCTTNCNCGGCGC CACCATGGAGATTCTTGGCTACCCAGC T CAC NGCAAGCAGCTATTCATTGTCTCGCCGCCGCCGCATACTGCCACTACTTGCTCAAAANTTTGCATGCTTGCTACGTGTAGCGGCCGGCTCATCGCTCGTGGCCTGGACGCGTCCTATATTGGGCGTGTGCCAGACCGGTCCAACGACAGAACCTTAACTTCCGAATCCACCTCTTGGTTTATTGGTGTTACCGGCACCGTTCCACGTTATTCTCTAAAACGAACTTTTCAATCTGTGTCTTGCTGGCCTAATCGGCACGGGGTGGTAATATAGGATTGGCNGGACTACTCTCGACTACAAACTATAACTGACCTGAACCTTTGGCTCAGGTGGAATTTTGAGGGGCAAGTATACTGACACCTACCCGATCTAGGATAGTATTTCTCTAATCATGAAAAAGAGTAATATTACAGTTTACTATACCTACNN]
[+] EMBL AU056135 [ CTGCTTCTACAACTGTGCAGGTAGCTAATTAATCTAGCAATCCTCCCGTAGATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAAGCTGACTTCGCCGACGACGACGACGTGGAGGCGCA CTCACTTCGTACCACACCGGCGCCTCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCCATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGCCAGCTACCCGGACATCGGGCCA GTACGCCTTCGGGGCCACCGGCA GAGAGCCGTCGCATTCTTCATGTACGTCGAGCTCTNACCTCGTCGCCATAAGCTTCCTCGTCCTNGA GGGCGACAATCTCGACAAGCTCTTCCCCGGCGCAAANCATGGAGATTCTTGGCTA CCAGCTTCCACGGGCAAGCAGCTATTtca ]
[+] EMBL AU056798 [ CTAGCAATCCTCCCGTAGATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAAGCTGACTTCGCCGACGACGACGACGTGGAGGCGCA CTCACTTCGTACCACACCGGCGCCTCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCCATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGCCAGCTACCCGGACATC GGCCA GT ]
consensusID : consensus_11003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 917 fasta sequence
[AGCTAGCTGCTTCTACAACTGTGCAGGTAGCTAATTAATCTAGCAATCCTCCCGTAGATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAAGCTGACTTCGCCGACGACGACGACGTGGAGGCGCAGCTCACTTCGTACCACACCGGCGCCTCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCCATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGNCAGCTACCCGGACATCGGCCAGTACGCCTTCNGCGCCACCGGCAGGAGAGCCGTCGCATTCTTTCATGTCGTCGAGCTCTACCCTCGTCGCATAANGCTTCTCGTCCTCGAGGGCGACAATCTCGACAAGCTCTTCCCCGGNGCACCCATGGAGATTCTGGCTACCAGCTCAGGCAAGCAGCTTATCATTGTACTCGCCGNCCGCGCATACTTGCCACTACCTGGCTCAGAATCTTGCATGCGCTCCCTACTGTANNCGGCCGGTTATATNCCTGNGGGCTCTTAGCGTGACTGATATGTGGGCGTGTCCCAAAACCGTTCANNCAGACAGAACACGTAACTCTTCCGAGTACCCCAACCTCGTNGCTATATGNTGTGTTCCGCGCCCGCTTTCCAGATACCTTCCTGAAAAACGAACTTTTCAAAACTTTGTTATTTGTTTGGTCCGCGGGCCACAACGGGGGTGAGGGGTATAATAGAAGAGAAGACCGTCTGCATACCTCTACCCTATCCTACAAAATATGANTGGGGGTTAGCGCCGCAAGATTTCTCGGCCGA]
[+] EMBL AW155226 [AGCTAGCTGCTTCTACAACTGTGCAGGTAGCTAATTAATCTAGCAATCCTCCCGTAGATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAAGCTGACTTCGCCGACGACGACGACGTGGAGGCGCAGCTCACTTCGTACCACACCGGCGCCTCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCCATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGNCAGCTACCCGGACATCGGCCAGTACGCCTTCNGCGCCACCGGCAGGAGAGCCGTCGCATTCTTTCATGTCGTCGAGCTCTACCCTCGTCGCATAANGCTTCTCGTCCTCGAGGGCGACAATCTCGACAAGCTCTTCCCCGGNGCACCCATGGAGATTCTGGCTACCAGCTCAGGCAAGCAGCTTATCATTGTACTCGCCGNCCGCGCATACTTGCCACTACCTGGCTCAGAATCTTGCATGCGCTCCCTACTGTANNCGGCCGGTTATATNCCTGNGGGCTCTTAGCGTGACTGATATGTGGGCGTGTCCCAAAACCGTTCANNCAGACAGAACACGTAACTCTTCCGAGTACCCCAACCTCGTNGCTATATGNTGTGTTCCGCGCCCGCTTTCCAGATACCTTCCTGAAAAACGAACTTTTCAAAACTTTGTTATTTGTTTGGTCCGCGGGCCACAACGGGGGTGAGGGGTATAATAGAAGAGAAGACCGTCTGCATACCTCTACCCTATCCTACAAAATATGANTGGGGGTTAGCGCCGCAAGATTTCTCGGCCGA]
consensusID : consensus_11003#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 560 fasta sequence
[GGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGCCAGCTACCCGGACATCGGCCAGTACGCCTTCGGCGCCACCGGCAGGAGAGCCGTCGCATTCTTCATGTACGTCGAGCTCTACCTCGTCGCCATAAGCTTCCTCGTCCTCGAGGGCGACAATCTCGACAAGCTCTTCCCCGGCGCAACCATGGAGATTCTTGGCTACCAGCTCCACGGCAAGCAGCTATTCATTGTACTCGCCGCCGCCGTCATACTGCCCACTACCTGGCTCAAGAATCTTGGCATGCTCGCTT-ACGTGTCAGC-GGCC-GGGCTCATC-GCCTCGGTGGCCTTGACGGCGTCACTGATCTGGGCCGGT-GTCGCCGAGACCGGGTTCCACCGGAACAGCAACACGCTCAACCTCGCCGGAATCCCCACCTCCCTCGGTCTCTACTTTGTCTGCTTCACCGGCCACGCCGTCTTCCCGACGATATACTCCTCCATTAAAAACAACAAACACTTCTCCAAAGTTCTCTTGATCTCATCGGTGCTGTGCAA]
[+] EMBL AU197745 [GGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGCCAGCTACCCGGACATCGGCCAGTACGCCTTCGGCGCCACCGGCAGGAGAGCCGTCGCATTCTTCATGTACGTCGAGCTCTACCTCGTCGCCATAAGCTTCCTCGTCCTCGAGGGCGACAATCTCGACAAGCTCTTCCCCGGCGCAACCATGGAGATTCTTGGCTACCAGCTCCACGGCAAGCAGCTATTCATTGTACTCGCCGCCGCCGTCATACTGCCCACTACCTGGCTCAAGAATCTTGGCATGCTCGCTT ACGTGTCAGC GGCC GGGCTCATC GCCTCGGTGGCCTTGACGGCGTCACTGATCTGGGCCGGT GTCGCCGAGACCGGGTTCCACCGGAACAGCAACACGCTCAACCTCGCCGGAATCCCCACCTCCC ]
[+] EMBL AU056923 [ GCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGCCAGCTACCCGGACATCGGCCAGTACGCCTTCGG GCCACCGGCAGGAGAGCCGTCGCATTCTTCATGTACGTCGAGCTCTACCTCGTCGCCATAAGCTTCCTCGTCCTCGAGGGCGACAATCTCGACAAGCTCTTCCCCGGCGCAACCATGGAGATTCTTGGCTACCAGCTCCACGGCAAGCAGCTATTCATTGTANTCGCCGCCGCCGTCATACTGCCCACTACCTGGCTCAAGAATCTTGGCATGCTCGCTTAACGTGTNAGCGGGCCGGGGCTCATCNGCCTtc ]
[+] EMBL BF889462 [ TACCTGGCTCAATAATCTTGGCATGCTCGCTT ACGTGTCAGC GGCC GGGCTCATC GCCTCGGTGGCCTTGACGGCGTCACTTATCTAAACCGGTGGTCGCCGAGACCGGGTTCCACCGGAACAGCAACACACTCAACCTCGCCGGAATCCCCACCTCCCTCGGTCTCTACTTTGTCTGCTTCACCGGCCACGCCGTCTTCCCGACGATATACTCCTCCATTAAAAACAACAAACACTTCTCCAAAGTTCTCTTGATCTCATCGGTGCTGTGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11003#0 GCGAGCTAGCTGCTTCTACAACTGTGCAGGTAGCTAATTAATCTAGCAATCCTCCCGTAG 60
consensus_11003#1 ---AGCTAGCTGCTTCTACAACTGTGCAGGTAGCTAATTAATCTAGCAATCCTCCCGTAG 57
consensus_11003#2 ------------------------------------------------------------
consensus_11003#0 ATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAA 120
consensus_11003#1 ATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAA 117
consensus_11003#2 ------------------------------------------------------------
consensus_11003#0 GCTGACTTCGCCGACGACGACGACGTGGAGGCGCA-CTCACTTCGTACCACACCGGCGCC 179
consensus_11003#1 GCTGACTTCGCCGACGACGACGACGTGGAGGCGCAGCTCACTTCGTACCACACCGGCGCC 177
consensus_11003#2 ------------------------------------------------------------
consensus_11003#0 TCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCC 239
consensus_11003#1 TCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCC 237
consensus_11003#2 ------------------------------------------------------------
consensus_11003#0 ATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGC 299
consensus_11003#1 ATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGC 297
consensus_11003#2 ---------------------------------------------------------GGC 3
***
consensus_11003#0 GCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATC 359
consensus_11003#1 GCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATC 357
consensus_11003#2 GCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATC 63
************************************************************
consensus_11003#0 GCCAGCTACCCGGACATCGGCCAGTACGCCTTCGGGGCCACCGGCAGGAGAGCCGTCGCA 419
consensus_11003#1 GNCAGCTACCCGGACATCGGCCAGTACGCCTTCNGCGCCACCGGCAGGAGAGCCGTCGCA 417
consensus_11003#2 GCCAGCTACCCGGACATCGGCCAGTACGCCTTCGGCGCCACCGGCAGGAGAGCCGTCGCA 123
* ******************************* * ************************
consensus_11003#0 TTCTT-CATGTACGTCGAGCTCTACC-TCGTCGCCATAAGCTTCCTCGTCCTCGAGGGCG 477
consensus_11003#1 TTCTTTCATGT-CGTCGAGCTCTACCCTCGTCGC-ATAANGCTTCTCGTCCTCGAGGGCG 475
consensus_11003#2 TTCTT-CATGTACGTCGAGCTCTACC-TCGTCGCCATAAGCTTCCTCGTCCTCGAGGGCG 181
***** ***** ************** ******* **** * ****************
consensus_11003#0 ACAATCTCGACAAGCTCTTCCCCGGCGCAACCATGGAGATTCTTGGCTACCAGCTCCACG 537
consensus_11003#1 ACAATCTCGACAAGCTCTTCCCCGGNGCACCCATGGAGATTCT-GGCTACCAGCTCA--G 532
consensus_11003#2 ACAATCTCGACAAGCTCTTCCCCGGCGCAACCATGGAGATTCTTGGCTACCAGCTCCACG 241
************************* *** ************* ************ *
consensus_11003#0 GCAAGCAGCTATTCATTGT-CTCGCCGCCGCCG-CATACT-GCCACTACTTG-CTCAAAA 593
consensus_11003#1 GCAAGCAGCTTATCATTGTACTCGCCGNCCGCG-CATACTTGCCACTACCTGGCTCAGAA 591
consensus_11003#2 GCAAGCAGCTATTCATTGTACTCGCCGCCGCCGTCATACTGCCCACTACCTGGCTCAAGA 301
********** ******* ******* * ** ****** ******* ** **** *
consensus_11003#0 NTTT--GCATGC--TTGCTACGTGT-AGCGGCCGG-CTCATCGCTCGTGG--CCTGGACG 645
consensus_11003#1 TCTT--GCATGCGCTCCCTACTGTA-NNCGGCCGG-TTATATNCCTGNGGGCTCTTAGCG 647
consensus_11003#2 ATCTTGGCATGC-TCGCTTACGTGTCAGCGGCCGGGCTCATCGCCTCGGTGGCCTTGACG 360
* ****** *** ******* * * * ** **
consensus_11003#0 -CGTCCTATAT-TGGGCGTGTGCC----AGACCGG--TCCAAC--GACAGAA---C-CTT 691
consensus_11003#1 -TGACTGATATGTGGGCGTGTCCC----AAAACCG--TTCANNCAGACAGAA---CACGT 697
consensus_11003#2 GCGTCACTGATCTGGGCCGGTGTCGCCGAGACCGGGTTCCACCGGAACAGCAACACGCTC 420
* * ** ***** ** * * * * * * ** **** * * *
consensus_11003#0 AACT--TCCGAATCC----ACCTCTTGGTTTATTGGTGTTACCGGCACCG---TTCCACG 742
consensus_11003#1 AACTCTTCCGAGTACCCCAACCTCGTNGCTATATGNTGTGTTCCGCGCCCGCTTTCCAGA 757
consensus_11003#2 AACCTCGCCGGAATCCCCACCTCCCTCGGTCTCTACT-TTGTCTGCTTCA-CCGGCCACG 478
*** *** * * * * * * * * * * ** * ***
consensus_11003#0 TTATTCTCT--AAAACGAACTTTTC-----AATCTGTGTCTTGCTGGCCTAATCGGCACG 795
consensus_11003#1 TACCTTCCTGAAAAACGAACTTTTC-----AAAAC-TTTGTTATTTGTTTGGTCCGC--- 808
consensus_11003#2 CCGTCTTCCCGACGATATACTCCTCCATTAAAAACAACAAACACTTCTCCAAAGTTCTCT 538
* * * *** ** ** * *
consensus_11003#0 GGGTGGTAATATAGGATTGGCNGGACTACTCTCGACTACAAACTATAACTGACCTGAACC 855
consensus_11003#1 GGGCCACAAC--GGGGGTGAGGGGTATAATAGAAGAGAAGACCGTCTGCATACCTCTACC 866
consensus_11003#2 TGATCTCATC--GGTGCTGTGCAA------------------------------------ 560
* * * **
consensus_11003#0 TTTGGCTCAGGTGGAATTTTGAGGGGCAAGTATACTGACACCTACCCGATCTAGGATAGT 915
consensus_11003#1 CT-ATCCTACAAAATATGANTGGGGGTTAGCGCCGCAAGATTT-CTCGGCCGA------- 917
consensus_11003#2 ------------------------------------------------------------
consensus_11003#0 ATTTCTCTAATCATGAAAAAGAGTAATATTACAGTTTACTATACCTACNN 965
consensus_11003#1 --------------------------------------------------
consensus_11003#2 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||