These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11015#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1440 fasta sequence [TCTCCCCAACCAAACCCGCGAAACCCCCACAAACGACGGTGGTGAAAGAAGATGAGAGGGCTACTCGCGTGCGCCACGCTCGCCCGCCGCGCCGCCGGCGCGACGTCGACGGCGCGGCGGCACCTGGCGGGCGCGGCCGAGGCGGCGGAGGCGGAGCTGAAGAAGACGGCGCTGTACGACTTCCACGTCGCGCACGGCGGGAAGATGGTGCCGTTCGCCGGGTGGAGCATGCCCATCCAGTACAAGGACACCATCATGGACTCCACCCTCAACTGCCGCGCCAACGGCAGCCTCTTCGACGTCTCCCACATGTGCGGCCTCAGCCTCCACGGCCGCCAGGCCATCCCCTTCCTCGAGTCCCTCGTCGTCGCCGACGTCGCGGCGCTCAAGGACGGCACCGGGACGCTCACCGTCTTCACCAACGACCGCGGCGGCGCCATCGACGACTCCGTCGTTACCAAGGTCACCGACCAGCACATCTACCTCGTCGTCAACGCCGGGTGCAGGGACAAGGATCTCGCCCACATTGGGGAGCACATGGAGGCCTTCAACAAGAAGGGCGGCGACGTCAAGTGGCACGTCCACGATGAGCGCTCGCTTCTTGCATTGCAGGGACCTCTTGCTGCACCAACTCTCCAGTTGCTGACAAAAGAAGATTTAAGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTCACCAGAACTGGTTATACCGGTGAAGATGGGTTTGAAATCTCTGTTCCATCAGAGAATGCAGTTGATCTTGCAAAGGCCCTCCTGGAGAAATCTGAAGGCAAGGTGAGACTGACTGGTTTAGGTGCCCGTGACAGTCTCCGCTTGGAGGCTGGCCTCTGCCTGTACGGCAACGACATGGAGCAACACATCACACCAGTTGAGGCTGGTCTCTCATGGGCAATTGGCAAGAGGAGGAAAGCAGAAGGCGGCTTCCTGGGAGCAGATGTGATCCTCAAGCAGCTCCAGGAAGGCCCAAAGATCAGGCGTGTCGGTCTCCTCTCGCAAGGACCGCCTCCTCGGAGTCATAGTGAGATTGTGAGCAACTCCGGGGAGAACATTGGTGAGGTTACCAGTGGAGGGTTCAGCCCCTGCTTGAAGAAGAACATCGCCATGGGCTACGTAAAATCCGGTTTGCACAAGGCTGGGACAGAGTTCAAGGTTGTCGTCCGTGGGAAGTCCTACGATGCCGTCGTCACCAAGATGCCGTTCGTGCCGA-CCAAGTACTACAAACCCTCATAGATTTGTACAAAGGATGCTCCTTCGGTTGAAATTTTCTCATGCAACTCTCTTGTCGCTGCTTGTTCTGCAGCACCGCAACTGTAACTTCTGTAAGGTCTCATCTTACAGCTTGACATTTTACCTCTGCCCATCTAATAATATGAAATGTGATATGCAGTATGG] [+] EMBL CB623364 [TCTCCCCAACCAAACCCGCGAAACCCCCACAAACGACGGTGGTGAAAGAAGATGAGAGGGCTACTCGCGTGCGCCACGCTCGCCCGCCGCGCCGCCGGCGCGACGTCGACGGCGCGGCGGCACCTGGCGGGCGCGGCCGAGGCGGCGGAGGCGGAGCTGAAGAAGACGGCGCTGTACGACTTCCACGTCGCGCACGGCGGGAAGATGGTGCCGTTCGCCGGGTGGAGCATGCCCATCCAGTACAAGGACACCATCATGGACTCCACCCTCAACTGCCGCGCCAACGGCAGCCTCTTCGACGTCTCCCACATGTGCGGCCTCAGCCTCCACGGCCGCCAGGCCATCCCCTTCCTCGAGTCCCTCGTCGTCGCCGACGTCGCGGCGCTCAAGGACGGCACCGGGACGCTCACCGTCTTCACCAACGACCGCGGCGGCGCCATCGACGACTCCGTCGTTACCAAGGTCACCGACCAGCACATCTACCTCGTCGTCAACGCCGGGTGCAGGGACAAGGATCTCGCCCACATTGGGGAGCACATGGAGGCCTTCAACAAGAAGGGCGGCGACGTCAAGTGGCACGTCCACGATGAGCGCTCGCTTCTTGCATTGCAGGGACCTCTTGCTGCACCAACTCTCCAGTTGCTGACAAAAGAAGATTTAAGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTCACCAGAACTGGTTATACCGGTGAAGATGGGTTTGAAATCTCTGTTCCATCAGAGAATGCAG ] [+] EMBL AK099234 [ CCGCGAAACCCCCACAAACGACGGTGGTGAAAGAAGATGAGAGGGCTACTCGCGTGCGCCACGCTCGCCCGCCGCGCCGCCGGCGCGACGTCGACGGCGCGGCGGCACCTGGCGGGCGCGGCCGAGGCGGCGGAGGCGGAGCTGAAGAAGACGGCGCTGTACGACTTCCACGTCGCGCACGGCGGGAAGATGGTGCCGTTCGCCGGGTGGAGCATGCCCATCCAGTACAAGGACACCATCATGGACTCCACCCTCAACTGCCGCGCCAACGGCAGCCTCTTCGACGTCTCCCACATGTGCGGCCTCAGCCTCCACGGCCGCCAGGCCATCCCCTTCCTCGAGTCCCTCGTCGTCGCCGACGTCGCGGCGCTCAAGGACGGCACCGGGACGCTCACCGTCTTCACCAACGACCGCGGCGGCGCCATCGACGACTCCGTCGTTACCAAGGTCACCGACCAGCACATCTACCTCGTCGTCAACGCCGGGTGCAGGGACAAGGATCTCGCCCACATTGGGGAGCACATGGAGGCCTTCAACAAGAAGGGCGGCGACGTCAAGTGGCACGTCCACGATGAGCGCTCGCTTCTTGCATTGCAGGGACCTCTTGCTGCACCAACTCTCCAGTTGCTGACAAAAGAAGATTTAAGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTCACCAGAACTGGTTATACCGGTGAAGATGGGTTTGAAATCTCTGTTCCATCAGAGAATGCAGTTGATCTTGCAAAGGCCCTCCTGGAGAAATCTGAAGGCAAGGTGAGACTGACTGGTTTAGGTGCCCGTGACAGTCTCCGCTTGGAGGCTGGCCTCTGCCTGTACGGCAACGACATGGAGCAACACATCACACCAGTTGAGGCTGGTCTCTCATGGGCAATTGGCAAGAGGAGGAAAGCAGAAGGCGGCTTCCTGGGAGCAGATGTGATCCTCAAGCAGCTCCAGGAAGGCCCAAAGATCAGGCGTGTCGGTCTCCTCTCGCAAGGACCGCCTCCTCGGAGTCATAGTGAGATTGTGAGCAACTCCGGGGAGAACATTGGTGAGGTTACCAGTGGAGGGTTCAGCCCCTGCTTGAAGAAGAACATCGCCATGGGCTACGTAAAATCCGGTTTGCACAAGGCTGGGACAGAGTTCAAGGTTGTCGTCCGTGGGAAGTCCTACGATGCCGTCGTCACCAAGATGCCGTTCGTGCCGA CCAAGTACTACAAACCCTCATGGATTTGTACAAAGGATGCTCCTTCGGTTGAAATTTTCTCATGCAACTCTCTTGTCGCTGCTTGTTCTGCAGCACCGCAACTGTAACTTCTGTAAGGTCTCATCTTACAGCCTGACATTTTACCTCTGCCCATCTAATAATATGAAATGT ] [+] EMBL CB657847 [ TGAAAGAAGATGAGAGGGCTACTCGCGTGCGCCACGCTCGCCCGCCGCGCCGCCGGCGCGACGTCGACGGCGCGGCGGCACCTGGCGGGCGCGGCCGAGGCGGCGGAGGCGGAGCTGAAGAAGACGGCGCTGTACGACTTCCACGTCGCGCACGGCGGGAAGATGGTGCCGTTCGCCGGGTGGAGCATGCCCATCCAGTACAAGGACACCATCATGGACTCCACCCTCAACTGCCGCGCCAACGGCAGCCTCTTCGACGTCTCCCACATGTGCGGCCTCAGCCTCCACGGCCGCCAGGCCATCCCCTTCCTCGAGTCCCTCGTCGTCGCCGACGTCGCGGCGCTCAAGGACGGCACCGGGACGCTCACCGTCTTCACCAACGACCGCGGCGGCGCCATCGACGACTCCGTCGTTACCAAGGTCACCGACCAGCACATCTACCTCGTCGTCAACGCCGGGTGCAGGGACAAGGATCTCGCCCACATTGGGGAGCACATGGAGGCCTTCAACAAGAAGGGCGGCGACGTCAAGTGGCACGTCCACGATGAGCGCTCGCTTCTTGCATTGCAGGGACCTCTTGCTGCACCAACTCTCCAGTTGCTGACAAAAGAAGATTTAAGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTCACCAGAACTGGTTATACCGGTGAAGATGGGTTTGAAATCTCTGTTCCATCAGAGAATGCA ] [+] EMBL CB652010 [ CCGGCGCGACGTCGACGGCGCGGCGGCACCTGGCGGGCGCGGCCGAGGCGGCGGAGGCGGAGCTGAAGAAGACGGCGCTGTACGACTTCCACGTCGCGCACGGCGGGAAGATGGTGCCGTTCGCCGGGTGGAGCATGCCCATCCAGTACAAGGACACCATCATGGACTCCACCCTCAACTGCCGCGCCAACGGCAGCCTCTTCGACGTCTCCCACATGTGCGGCCTCAGCCTCCACGGCCGCCAGGCCATCCCCTTCCTCGAGTCCCTCGTCGTCGCCGACGTCGCGGCGCTCAAGGACGGCACCGGGACGCTCACCGTCTTCACCAACGACCGCGGCGGCGCCATCGACGACTCCGTCGTTACCAAGGTCACCGACCAGCACATCTACCTCGTCGTCAACGCCGGGTGCAGGGACAAGGATCTCGCCCACATTGGGGAGCACATGGAGGCCTTCAACAAGAAGGGCGGCGACGTCAAGTGGCACGTCCACGATGAGCGCTCGCTTCTTGCATTGCAGGGACCTCTTGCTGCACCAACTCTCCAGTTGCTGACAAAAGAAGATTTAAGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTCACCAGAACTGGTTATACCGGTGAAGATGGGTTTG ] [+] EMBL CB619323 [ agaagACCGCGGGAAGATGGTGCCGTTCGCCGGGTGGAGCATGCCCATCCAGTACAAGGACACCATCATGGACTCCACCCTCAACTGCCGCGCCAACGGCAGCCTCTTCGACGTCTCCCACATGTGCGGCCTCAGCCTCCACGGCCGCCAGGCCATCCCCTTCCTCGAGTCCCTCGTCGTCGCCGACGTCGCGGCGCTCAAGGACGGCACCGGGACGCTCACCGTCTTCACCAACGACCGCGGCGGCGCCATCGACGACTCCGTCGTTACCAAGGTCACCGACCAGCACATCTACCTCGTCGTCAACGCCGGGTGCAGGGACAAGGATCTCGCCCACATTGGGGAGCACATGGAGGCCTTCAACAAGAAGGGCGGCGACGTCAAGTGGCACGTCCACGATGAGCGCTCGCTTCTTGCATTGCAGGGACCTCTTGCTGCACCAACTCTCCAGTTGCTGACAAAAGAAGATTTAAGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTCACCAGAACTGGTTATACCGGTGAAGATGGGTTTGAAATCTCTGTTCCATCAGAGAATGCAGTTGATCTTGCAAAGGCCCTCCTGGAGAAATCTGAAGGCAAGGTGAGACTGACTGGTTTACGTGCCCGTGACAGTCTCCGCTT ] [+] EMBL AK059270 [ ACCGACCAGCACATCTACCTCGTCGTCAACGCCGGGTGCAGGGACAAGGATCTCGCCCACATTGGGGAGCACATGGAGGCCTTCAACAAGAAGGGCGGCGACGTCAAGTGGCACGTCCACGATGAGCGCTCGCTTCTTGCATTGCAGGGACCTCTTGCTGCACCAACTCTCCAGTTGCTGACAAAAGAAGATTTAAGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTCACCAGAACTGGTTATACCGGTGAAGATGGGTTTGAAATCTCTGTTCCATCAGAGAATGCAGTTGATCTTGCAAAGGCCCTCCTGGAGAAATCTGAAGGCAAGGTGAGACTGACTGGTTTAGGTGCCCGTGACAGTCTCCGCTTGGAGGCTGGCCTCTGCCTGTACGGCAACGACATGGGGCAACACATCACACCAGTTGAGGCTGGTCTCTCATGGGCAATTGGCAAGAGGAGGAAAGCAGAAGGCGGCTTCCTGGGAGCAGATGTGATCCTCAAGCAGCTCCAGGAAGGCCCAAAGATCAGGCGTGTCGGTCTCCTCTCGCAAGGACCGCCTCCTCGGAGTCATAGTGAGATTGTGAGCAACTCCGGGGAGAACATTGGTGAGGTTACCAGTGGAGGGTTCAGCCCCTGCTTGAAGAAGAACATCGCCATGGGCTACGTAAAATCCGGTTTGCACAAGGCTGGGACAGAGTTCAAGGTTGTCGTCCGTGGGAAGTCCTACGATGCCGTCGTCACCAAGATGCCGTTCGTGCCGA CCAAGTACTACAAACCCTCATAGATTTGTACAAAGGATGCTCCTTCGGTTGAAATTTTCTCATGCAACTCTCTTGTCGCTGCTTGTTCTGCAGCACCGCAACTGTAACTTCTGTAAGGTCTCATCTTACAGCTTGACATTTTACCTCTGCCCATCTAATAATATGAAATGTGATATGCAGTATGG] [+] EMBL BQ906463 [ CCAAAGATCAGGCGTGTCGGTCTCCTCTCGCAAGGACCGCCTCCTCGGAGTCATAGTGAGATTGTGAGCAACTCCGGGGAGAACATTGGTGAGGTTACCAGTGGAGGGTTCAGCCCCTGCTTGAAGAAGAACATCGCCATGGGCTACGTAAAATCCGGTTTGCACAAGGCTGGGACAGAGTTCAAGGTTGTCGTCCGTGGGAAGTCCTACGATGCCGTCGTCACCAAGATGCCGTTCGTGCCGACCCACGTACTACAAACCCTCATAGATTTGTACAAAGGATGCTCCTTCGGTTGAAATTTTCTCATGCAACTCTCTTGTCGCTGCTTGTTCTGCAGCACCGCAACTGTAACTTCTGTAAGGTCTCATCTTACAGCTTGACATTTTACCTCTCCCCATCTAATAATATNACATGTGAgtaaaaaa ] consensusID : consensus_11015#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [CAAGAGGGGGAAAGCAGAAGGGGGTTTTTTGGGAGCAAATGTGATCCTCAAGCAGTTCCAGGAAGGCCCAAAAATCAGGGGGGTTGGTTTCCTTTTGCAAGGACCCCCTCCTTGGAGTCATAGTGAGATTGTGAGCAACTCCGGGGAGAACATTGGTGAGGTTTCCAGGGGAGGGTTCAACCCCTGTTTGAAGAAGAACATCCCCAAGGGTTAGGTAAAATCCGGTTTGCCCAAGGCGGGGACAGAGTTCAAGGTTTTTGTCCGTGGGAAGTCCTTCGATGCCGTTTTCCCCAAAATTCCGTTTGTGCCGCCCAAGTATTACAAACCCTCATAGATTTGTACAAAGGAGGCTCCTTCGGTTGAAATTTTTTCATG] [-] EMBL CB657848 [CAAGAGGGGGAAAGCAGAAGGGGGTTTTTTGGGAGCAAATGTGATCCTCAAGCAGTTCCAGGAAGGCCCAAAAATCAGGGGGGTTGGTTTCCTTTTGCAAGGACCCCCTCCTTGGAGTCATAGTGAGATTGTGAGCAACTCCGGGGAGAACATTGGTGAGGTTTCCAGGGGAGGGTTCAACCCCTGTTTGAAGAAGAACATCCCCAAGGGTTAGGTAAAATCCGGTTTGCCCAAGGCGGGGACAGAGTTCAAGGTTTTTGTCCGTGGGAAGTCCTTCGATGCCGTTTTCCCCAAAATTCCGTTTGTGCCGCCCAAGTATTACAAACCCTCATAGATTTGTACAAAGGAGGCTCCTTCGGTTGAAATTTTTTCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11015#0 TCTCCCCAACCAAACCCGCGAAACCCCCACAAACGACGGTGGTGAAAGAAGATGAGAGGG 60 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 CTACTCGCGTGCGCCACGCTCGCCCGCCGCGCCGCCGGCGCGACGTCGACGGCGCGGCGG 120 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 CACCTGGCGGGCGCGGCCGAGGCGGCGGAGGCGGAGCTGAAGAAGACGGCGCTGTACGAC 180 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 TTCCACGTCGCGCACGGCGGGAAGATGGTGCCGTTCGCCGGGTGGAGCATGCCCATCCAG 240 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 TACAAGGACACCATCATGGACTCCACCCTCAACTGCCGCGCCAACGGCAGCCTCTTCGAC 300 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 GTCTCCCACATGTGCGGCCTCAGCCTCCACGGCCGCCAGGCCATCCCCTTCCTCGAGTCC 360 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 CTCGTCGTCGCCGACGTCGCGGCGCTCAAGGACGGCACCGGGACGCTCACCGTCTTCACC 420 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 AACGACCGCGGCGGCGCCATCGACGACTCCGTCGTTACCAAGGTCACCGACCAGCACATC 480 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 TACCTCGTCGTCAACGCCGGGTGCAGGGACAAGGATCTCGCCCACATTGGGGAGCACATG 540 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 GAGGCCTTCAACAAGAAGGGCGGCGACGTCAAGTGGCACGTCCACGATGAGCGCTCGCTT 600 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 CTTGCATTGCAGGGACCTCTTGCTGCACCAACTCTCCAGTTGCTGACAAAAGAAGATTTA 660 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 AGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTC 720 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 ACCAGAACTGGTTATACCGGTGAAGATGGGTTTGAAATCTCTGTTCCATCAGAGAATGCA 780 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 GTTGATCTTGCAAAGGCCCTCCTGGAGAAATCTGAAGGCAAGGTGAGACTGACTGGTTTA 840 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 GGTGCCCGTGACAGTCTCCGCTTGGAGGCTGGCCTCTGCCTGTACGGCAACGACATGGAG 900 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 CAACACATCACACCAGTTGAGGCTGGTCTCTCATGGGCAATTGGCAAGAGGAGGAAAGCA 960 consensus_11015#1 --------------------------------------------CAAGAGGGGGAAAGCA 16 ******* ******** consensus_11015#0 GAAGGCGGCTTCCTGGGAGCAGATGTGATCCTCAAGCAGCTCCAGGAAGGCCCAAAGATC 1020 consensus_11015#1 GAAGGGGGTTTTTTGGGAGCAAATGTGATCCTCAAGCAGTTCCAGGAAGGCCCAAAAATC 76 ***** ** ** ******** ***************** **************** *** consensus_11015#0 AGGCGTGTCGGTCTCCTCTCGCAAGGACCGCCTCCTCGGAGTCATAGTGAGATTGTGAGC 1080 consensus_11015#1 AGGGGGGTTGGTTTCCTTTTGCAAGGACCCCCTCCTTGGAGTCATAGTGAGATTGTGAGC 136 *** * ** *** **** * ********* ****** *********************** consensus_11015#0 AACTCCGGGGAGAACATTGGTGAGGTTACCAGTGGAGGGTTCAGCCCCTGCTTGAAGAAG 1140 consensus_11015#1 AACTCCGGGGAGAACATTGGTGAGGTTTCCAGGGGAGGGTTCAACCCCTGTTTGAAGAAG 196 *************************** **** ********** ****** ********* consensus_11015#0 AACATCGCCATGGGCTACGTAAAATCCGGTTTGCACAAGGCTGGGACAGAGTTCAAGGTT 1200 consensus_11015#1 AACATCCCCAAGGGTTAGGTAAAATCCGGTTTGCCCAAGGCGGGGACAGAGTTCAAGGTT 256 ****** *** *** ** **************** ****** ****************** consensus_11015#0 GTCGTCCGTGGGAAGTCCTACGATGCCGTCGTCACCAAGATGCCGTTCGTGCCGACCAAG 1260 consensus_11015#1 TTTGTCCGTGGGAAGTCCTTCGATGCCGTTTTCCCCAAAATTCCGTTTGTGCCGCCCAAG 316 * **************** ********* ** **** ** ***** ****** ***** consensus_11015#0 TACTACAAACCCTCATAGATTTGTACAAAGGATGCTCCTTCGGTTGAAATTTTCTCATGC 1320 consensus_11015#1 TATTACAAACCCTCATAGATTTGTACAAAGGAGGCTCCTTCGGTTGAAATTTTTTCATG- 375 ** ***************************** ******************** ***** consensus_11015#0 AACTCTCTTGTCGCTGCTTGTTCTGCAGCACCGCAACTGTAACTTCTGTAAGGTCTCATC 1380 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 TTACAGCTTGACATTTTACCTCTGCCCATCTAATAATATGAAATGTGATATGCAGTATGG 1440 consensus_11015#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||