cluster # 1103

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1103 cluster # 1103 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1103#0 length = 506 sequences # 1

consensus_1103#1 length = 157 sequences # 1

consensusID : consensus_1103#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [GGCCTTGAAAAAGACAGGTGCTACATCAAATATTGGTTTTTTAGGCATGAATGACGACTTTTTGTCTAAAGTGCAGATTCGAAAAAATGGTGTTACTACAGTCACTACTGAAGAGCTTGATGCGCTTATTGGATCGTTAAATGTTACAAGGCATAAGGGAGAGAGCACTGAAACGGCAGCTTGATAAGTTCTATAATACGATAATGTACTCAATTTTCATTCAAAGAAAAAAATATAAGATAATTCACTCATTGCTGTAGTTGGGTACTTTTTACATGTTTGATGGTAGCTTCTGTTAATTGTTGGAAGTGACAGATTAGCTGGAAAGAAGTTAATCATCCCATGTCAATTTTTTGAAGGCCTACATCTAATTTTTTTAAAAAACAAAATGTTATTTAATGTACATAATGGCCCAGAATGGTCTTTACTGGTGGAACATTCAGTTCAAGGCCTAAATAACACACCGCATCCTGCATTTTTGACTGAATGGATGCGCTATACTTGCT]

[+] EMBL CF323017             [GGCCTTGAAAAAGACAGGTGCTACATCAAATATTGGTTTTTTAGGCATGAATGACGACTTTTTGTCTAAAGTGCAGATTCGAAAAAATGGTGTTACTACAGTCACTACTGAAGAGCTTGATGCGCTTATTGGATCGTTAAATGTTACAAGGCATAAGGGAGAGAGCACTGAAACGGCAGCTTGATAAGTTCTATAATACGATAATGTACTCAATTTTCATTCAAAGAAAAAAATATAAGATAATTCACTCATTGCTGTAGTTGGGTACTTTTTACATGTTTGATGGTAGCTTCTGTTAATTGTTGGAAGTGACAGATTAGCTGGAAAGAAGTTAATCATCCCATGTCAATTTTTTGAAGGCCTACATCTAATTTTTTTAAAAAACAAAATGTTATTTAATGTACATAATGGCCCAGAATGGTCTTTACTGGTGGAACATTCAGTTCAAGGCCTAAATAACACACCGCATCCTGCATTTTTGACTGAATGGATGCGCTATACTTGCT]




>consensus_1103#0
GGCCTTGAAAAAGACAGGTGCTACATCAAATATTGGTTTTTTAGGCATGAATGACGACTT
TTTGTCTAAAGTGCAGATTCGAAAAAATGGTGTTACTACAGTCACTACTGAAGAGCTTGA
TGCGCTTATTGGATCGTTAAATGTTACAAGGCATAAGGGAGAGAGCACTGAAACGGCAGC
TTGATAAGTTCTATAATACGATAATGTACTCAATTTTCATTCAAAGAAAAAAATATAAGA
TAATTCACTCATTGCTGTAGTTGGGTACTTTTTACATGTTTGATGGTAGCTTCTGTTAAT
TGTTGGAAGTGACAGATTAGCTGGAAAGAAGTTAATCATCCCATGTCAATTTTTTGAAGG
CCTACATCTAATTTTTTTAAAAAACAAAATGTTATTTAATGTACATAATGGCCCAGAATG
GTCTTTACTGGTGGAACATTCAGTTCAAGGCCTAAATAACACACCGCATCCTGCATTTTT
GACTGAATGGATGCGCTATACTTGCT

consensusID : consensus_1103#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 157
fasta sequence

                              [GCCCTTGGAAAAGACAGGTACTACAACAGATATTGGTTTTTTAGGCATGAAGGACGACTTTTTGTCGAAAGTGCAGATTCCAAATATTGTTTTTACTACAGCACTAAGGAAGAGCTTGATGCGCTTATTGGATCGATAAATGTTAAAGGCATAAGGG]

[+] EMBL CF322875             [GCCCTTGGAAAAGACAGGTACTACAACAGATATTGGTTTTTTAGGCATGAAGGACGACTTTTTGTCGAAAGTGCAGATTCCAAATATTGTTTTTACTACAGCACTAAGGAAGAGCTTGATGCGCTTATTGGATCGATAAATGTTAAAGGCATAAGGG]




>consensus_1103#1
GCCCTTGGAAAAGACAGGTACTACAACAGATATTGGTTTTTTAGGCATGAAGGACGACTT
TTTGTCGAAAGTGCAGATTCCAAATATTGTTTTTACTACAGCACTAAGGAAGAGCTTGAT
GCGCTTATTGGATCGATAAATGTTAAAGGCATAAGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1103#0      GGCCTTGAAAAAGACAGGTGCTACATCAAATATTGGTTTTTTAGGCATGAATGACGACTT 60
consensus_1103#1      GCCCTTGGAAAAGACAGGTACTACAACAGATATTGGTTTTTTAGGCATGAAGGACGACTT 60
                      * ***** *********** ***** ** ********************** ********

consensus_1103#0      TTTGTCTAAAGTGCAGATTCGAAAAAATGGTGTTACTACAGTCACTACTGAAGAGCTTGA 120
consensus_1103#1      TTTGTCGAAAGTGCAGATTCCAAATATTGTTTTTACTACAG-CACTAAGGAAGAGCTTGA 119
                      ****** ************* *** * ** * ********* *****  ***********

consensus_1103#0      TGCGCTTATTGGATCGTTAAATGTTACAAGGCATAAGGGAGAGAGCACTGAAACGGCAGC 180
consensus_1103#1      TGCGCTTATTGGATCGATAAATGTTA-AAGGCATAAGGG--------------------- 157
                      **************** ********* ************                     

consensus_1103#0      TTGATAAGTTCTATAATACGATAATGTACTCAATTTTCATTCAAAGAAAAAAATATAAGA 240
consensus_1103#1      ------------------------------------------------------------
                                                                                  

consensus_1103#0      TAATTCACTCATTGCTGTAGTTGGGTACTTTTTACATGTTTGATGGTAGCTTCTGTTAAT 300
consensus_1103#1      ------------------------------------------------------------
                                                                                  

consensus_1103#0      TGTTGGAAGTGACAGATTAGCTGGAAAGAAGTTAATCATCCCATGTCAATTTTTTGAAGG 360
consensus_1103#1      ------------------------------------------------------------
                                                                                  

consensus_1103#0      CCTACATCTAATTTTTTTAAAAAACAAAATGTTATTTAATGTACATAATGGCCCAGAATG 420
consensus_1103#1      ------------------------------------------------------------
                                                                                  

consensus_1103#0      GTCTTTACTGGTGGAACATTCAGTTCAAGGCCTAAATAACACACCGCATCCTGCATTTTT 480
consensus_1103#1      ------------------------------------------------------------
                                                                                  

consensus_1103#0      GACTGAATGGATGCGCTATACTTGCT 506
consensus_1103#1      --------------------------