cluster # 11030

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Oryza sativa
cluster # 11030 cluster # 11030 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11030#0 length = 982 sequences # 6

consensus_11030#1 length = 312 sequences # 1
consensus_11030#2 length = 255 sequences # 1

consensusID : consensus_11030#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 982
fasta sequence

                              [GTTCGAGCGGTGAGGCACAGTCTTGTGACAGGAGAGAGAAGAGAGGAGTTGGTTAGTGCTACGCTGCGACGGATGGACCGCGCGACGGAGGAGGAGACGGCGGCGACGGGGCGGCGGATACTGGTGGCCGTGGACGAGGGCGACGAGAGCGTCCACGCGCTCAAGTGGTGCCTCGCCAGCTTCGCCAAGCGCGGCGGCGGCGGGGGCGCGGCGCCGCCGGACACCATCATCCTGCTCTACGTCCGGCCGCCGCCGCCCACCTACTCCGTGCTCGACGCCTCCGGCTACGTGTTCTCCGACGAGGTGGCCGCCGCCATTGACGGGTACA-GCAAGGAGGTGGCGGAGGCGGTGGTGGAGAAGG-CGCAGAAGCTCTGCACGCTCTACGGCAAGGAGGTCGGTGGC-GACGGTGAGGCTGGCCATGAGATGAAGGTGGAGGTGAAGGTGGCGGTCGGCGACGCCAGGAACGTCATCTGCCAGATGGCGGACAAGCTCGGCGCCGACGTG-CTGGTGATGGGGAGCCATGGCTATGGCCTGTTCAAGAGGGCTCTGCTTGGAAGTGTCAGTGATTACT-GCGTCAGGAACGCCAACTGTCCAGTTCTCATCGTCA-AGTCGTAGCTGCCACTCACTCCAGTGCTTGTAACTGTGCA-GCAGCATGTGTGCTCTGTCCGGC---TTTTTTTTTTGT-T-TTTGCCTTGTG-TTCTGCT-TTGTA-TGTCTACTTTAGTTCGCTTCGCATGTAATCTGCCGGAAGAGGACGTGCTGAGTGATTACTCAGAACTCTGAAGTTATCCAGCAACCTGTATATAGAAGAACTACTTTCTGTGGAGATGGCAAATTTAGTTTTTCTGTCATCGGCTTCCACTTTTAGCACTGATTTCTGAATTTGGCTGTATAATTAGCAAATACCCAGGGTTTGCTTTGATCTATTCGCGCTAACCATTGCGCAGAAATTCAGAACTCCTTTATAAACAAATCTCTAAGAGAGAGA]

[+] EMBL AK071397             [GTTCGAGCGGTGAGGCACAGTCTTGTGACAGGAGAGAGAAGAGAGGAGTTGGTTAGTGCTACGCTGCGACGGATGGACCGCGCGACGGAGGAGGAGACGGCGGCGACGGGGCGGCGGATACTGGTGGCCGTGGACGAGGGCGACGAGAGCGTCCACGCGCTCAAGTGGTGCCTCGCCAGCTTCGCCAAGCGCGGCGGCGGCGGGGGCGCGGCGCCGCCGGACACCATCATCCTGCTCTACGTCCGGCCGCCGCCGCCCACCTACTCCGTGCTCGACGCCTCCGGCTACGTGTTCTCCGACGAGGTGGCCGCCGCCATTGACGGGTACA GCAAGGAGGTGGCGGAGGCGGTGGTGGAGAAGG CGCAGAAGCTCTGCACGCTCTACGGCAAGGAGGTCGGTGGC GACGGTGAGGCTGGCCATGAGATGAAGGTGGAGGTGAAGGTGGCGGTCGGCGACGCCAGGAACGTCATCTGCCAGATGGCGGACAAGCTCGGCGCCGACGTG CTGGTGATGGAGAGCCATGGCTATGGCCTGTTCAAGAGGGCTCTGCTTGGAAGTGTCAGTGATTACT GCGTCAGGAACGCCAACTGTCCAGTTCTCATCGTCA AGTCGTAGCTGCCACTCACTCCAGTGCTTGTAACTGTGCA GCAACATGTGTGCTCTGTCCGGC   TTTTTTTTTTGT T TTTGCCTTGTG TTCTGCT TTGTA TGTCTACTTTAGTTCGCTTCGCATGTAATCTGCCGGAAGAGGACGTGCTGAGTGATTACTCAGAACTCTGAAGTTATCCAGCAACCTGTATATAGAAGAACTACTTTCTGTGGAGATGGCAAATTTAGTTTTTCTGTCATCGGCTTCCACTTTTAGCACTGATTTCTGAATTTGGCTGTATAATTAGCAAATACCCAGGGTTTGCTTTGATCTATTCGCGCTAACCATTGCGCAGAAATTCAGAACTCCTTTATAAACAAATCTCTAAGAGAGAGA]
[+] EMBL CF339333             [GTTCGAGCGGTGAGGCACAGTCTTGTGACAGGAGAGAGAAGAGAGGAGTTGGTTAGTGCTACGCTGCGACGGATGGACCGCGCGACGGAGGAGGAGACGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL C74739               [                                                                                                                                           GCGACGAGAGCGTCCACGCGCTCAAGTGGTGCCTCGCCAGCTTCGCCAAGCGCGGCGGCGGCGGGGGCGCGGCGCCGCGGAACACCATCATCCTGCTCTACGTCCGGCCGCCGCCGCCCACCTACTCCGTGCTCGACGCCTCCGGCTACGTGTTCTCCGACGAGGTGGCCGCCGCCATTGACGGGTACA GCAAGGAGGTGGCGGAGGCGGTGGTGGAGAAGG CGCAGAAGCTCTGCACGCTCTACGGCAAGGAGGTCGGTGGC GACGGTGAGGCTGGCCATGAGATGAAGGTGGAGGTGAAAGTGGCGGTCGGCGACGCCAGGAACGTCATCTGCCAGATGGCGGACAAGCTCGGCGCCGACGTG NTGGTGATTGGGAG CATTGCTATtg                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BI801104             [                                                                                                                                                                                                                                                                                                                                 GGGTACACACCAGGA GT GCGGAGCCGGTGTTGGAGAAGGCCGCAGAAGCTCTGCACGCTCTAC GCAAGGAGTTCGGTGCCAGACGGTGAGGCTGGCCATGAGATGAAGGTGGAGTTGAA GTGTCGCTCGGCGACGCCAGGAGCGTCATCTGCCAGATGGCGGACAAGCTCGGCACCGACGTGTCTGGTGATGGGGACCCATGGCTATGGCCTGTTCAAGAGGGCTCTGCTTGGAAGTGTCAGTGATTACTCGCGTCAGGAACGCCAACTGTCCAGTTCTCATCGTCACAGTCGTAGCTGCCACTCACTCCA TGCTTGTAACTGTGCACGCAGCATGTGTGCTCTGTCCGGC   CTTTTTTTTTGTCTGTTTGCCTTGTGCTTCTGCTATTGTACAGTCTACTTTAGTTCGCTTCGCATGTAATCTGCCGGAAGAGGACGTGCTGAGTGATTACTCAGAACTCTGAAGTTATCCAGCAACCTGTATATAGAAGAACTACTTTCTGTGGAGATGGCCAAaaaaaaaa                                                                                                                                                 ]
[-] EMBL CB964692             [                                                                                                                                                                                                                                                                                                                                                                 TGGAGAAGG CGCAGAAGCTCTGCACGCTCTACGGCAAGGAGGTCGGTGGC GACGGTGAGGCTGGCCATGAGATGAAGGTGGAGGTGAAGGTGGCGGTCGGCGACGCCAGGAGCGTCATCTGCCAGATGGCGGACAAGCTCGGCGCCGACGTG CTGGTGATGGGGAGCCATGGCTATGGCCTGTTCAAGAGGGCTCTGCTTGGAAGTGTCAGTGATTACT GCGTCAGGAACGCCAACTGTCCAGTTCTCATCGTCA AGTCGTAGCTGCCACTCACTCCAATGCTTGTAACTGTGCA GCAGCATGTGTGCTCTGTCCGGCTTTTTTTTTTTTTGT T TTTGCCTTGTG TTCTGCT TTGTA TGTCTACTTTAGTTCGCTTCGCATGTAATCTGCCGGAAGAGGACGTGCTGAGTGATTACTCAGAACTCTGAAGTTATCCAGCAACCTGTATATAGAAGAACTACTTTCTGTGGAGATGGCAAATTTAGT                                                                                                                                                   ]
[+] EMBL AU172389             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TCTGCTTGGAAGTGTCAGTGATTACT GCGTCAGGAACGCCAACTGTCCAGTTCTCATCGTCA AGTCGTAGCTGCCACTCACTCCAGTGCTTGTAACTGTGCA GCAGCATGTGTGCTCTGTCCGGC   TTTTTTTTTTGT T TTTGCCTTGTG TTCTGCT TTGTA TGTCTACTTTAGTTCGCTTCGCATGTAATCTGCCGGAAGAGGACGTGCTGAGTGATTACTCAGAACTCTGAAGTTATCCAGCAACCTGTATATAGAAGAACTACTTTCTGTGGAGATGGCAAATTTAGTTTTTCTGTCATCGGCTTCCACTTTTAGCACTGATTTNTGAATTTGGCTGTATAATTAGCAAATACCCAGGGTTTGCTTTGATCTATTCGCGCTAACCATTGCGCAGAAATTCAGAACTCCTTTATAAAAAAAaaaa           ]




>consensus_11030#0
GTTCGAGCGGTGAGGCACAGTCTTGTGACAGGAGAGAGAAGAGAGGAGTTGGTTAGTGCT
ACGCTGCGACGGATGGACCGCGCGACGGAGGAGGAGACGGCGGCGACGGGGCGGCGGATA
CTGGTGGCCGTGGACGAGGGCGACGAGAGCGTCCACGCGCTCAAGTGGTGCCTCGCCAGC
TTCGCCAAGCGCGGCGGCGGCGGGGGCGCGGCGCCGCCGGACACCATCATCCTGCTCTAC
GTCCGGCCGCCGCCGCCCACCTACTCCGTGCTCGACGCCTCCGGCTACGTGTTCTCCGAC
GAGGTGGCCGCCGCCATTGACGGGTACAGCAAGGAGGTGGCGGAGGCGGTGGTGGAGAAG
GCGCAGAAGCTCTGCACGCTCTACGGCAAGGAGGTCGGTGGCGACGGTGAGGCTGGCCAT
GAGATGAAGGTGGAGGTGAAGGTGGCGGTCGGCGACGCCAGGAACGTCATCTGCCAGATG
GCGGACAAGCTCGGCGCCGACGTGCTGGTGATGGGGAGCCATGGCTATGGCCTGTTCAAG
AGGGCTCTGCTTGGAAGTGTCAGTGATTACTGCGTCAGGAACGCCAACTGTCCAGTTCTC
ATCGTCAAGTCGTAGCTGCCACTCACTCCAGTGCTTGTAACTGTGCAGCAGCATGTGTGC
TCTGTCCGGCTTTTTTTTTTGTTTTTGCCTTGTGTTCTGCTTTGTATGTCTACTTTAGTT
CGCTTCGCATGTAATCTGCCGGAAGAGGACGTGCTGAGTGATTACTCAGAACTCTGAAGT
TATCCAGCAACCTGTATATAGAAGAACTACTTTCTGTGGAGATGGCAAATTTAGTTTTTC
TGTCATCGGCTTCCACTTTTAGCACTGATTTCTGAATTTGGCTGTATAATTAGCAAATAC
CCAGGGTTTGCTTTGATCTATTCGCGCTAACCATTGCGCAGAAATTCAGAACTCCTTTAT
AAACAAATCTCTAAGAGAGAGA

consensusID : consensus_11030#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [GTGCTTGCAGGAGGTCGGTGGCGACGGTGAGGCTGGCCATGAGATGAAGGTGGAGGTGAAGGTGGCGGTCGGCGACGCAGGAACGTCATCTGCCAGATGGCGGACAAGCTCGGCGCCGACGTGCTGGTGATGGGGAGCCATGGCTATGGCCTGTTCAAGAGGTCACTGAAACGATCTCGTTTTCAATCTCAGAAGCTGTNAGAGCGCANTTAATCTGCTTTGCATATCATCTGCTTCAATCAGCTCGCGCTCTCGGTGACGATGATGTTTAGCTTAATTACGCTATATATGCTCGTTGATTTTGCAGGGCTC]

[+] EMBL C29114               [GTGCTTGCAGGAGGTCGGTGGCGACGGTGAGGCTGGCCATGAGATGAAGGTGGAGGTGAAGGTGGCGGTCGGCGACGCAGGAACGTCATCTGCCAGATGGCGGACAAGCTCGGCGCCGACGTGCTGGTGATGGGGAGCCATGGCTATGGCCTGTTCAAGAGGTCACTGAAACGATCTCGTTTTCAATCTCAGAAGCTGTNAGAGCGCANTTAATCTGCTTTGCATATCATCTGCTTCAATCAGCTCGCGCTCTCGGTGACGATGATGTTTAGCTTAATTACGCTATATATGCTCGTTGATTTTGCAGGGCTC]




>consensus_11030#1
GTGCTTGCAGGAGGTCGGTGGCGACGGTGAGGCTGGCCATGAGATGAAGGTGGAGGTGAA
GGTGGCGGTCGGCGACGCAGGAACGTCATCTGCCAGATGGCGGACAAGCTCGGCGCCGAC
GTGCTGGTGATGGGGAGCCATGGCTATGGCCTGTTCAAGAGGTCACTGAAACGATCTCGT
TTTCAATCTCAGAAGCTGTNAGAGCGCANTTAATCTGCTTTGCATATCATCTGCTTCAAT
CAGCTCGCGCTCTCGGTGACGATGATGTTTAGCTTAATTACGCTATATATGCTCGTTGAT
TTTGCAGGGCTC

consensusID : consensus_11030#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [AAAGGACGTGTTGAGTGATTACTCAGAACTTTGAAGTTATCCAGCAACCTGTATATAAAAGAACTACTTTTTGTGGAGATGGCAAATTTAGTTTTTTTGTCATCGGGTTCCCCTTTTAGCACTGATTTTTGAATTTGGCGGTATAATTAGCAAAAACCCAGGGTTTGCTTTGATTTATTCGCGGTAACCATTGGGCAGAAATTCAGAACTCCTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF316818             [AAAGGACGTGTTGAGTGATTACTCAGAACTTTGAAGTTATCCAGCAACCTGTATATAAAAGAACTACTTTTTGTGGAGATGGCAAATTTAGTTTTTTTGTCATCGGGTTCCCCTTTTAGCACTGATTTTTGAATTTGGCGGTATAATTAGCAAAAACCCAGGGTTTGCTTTGATTTATTCGCGGTAACCATTGGGCAGAAATTCAGAACTCCTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11030#2
AAAGGACGTGTTGAGTGATTACTCAGAACTTTGAAGTTATCCAGCAACCTGTATATAAAA
GAACTACTTTTTGTGGAGATGGCAAATTTAGTTTTTTTGTCATCGGGTTCCCCTTTTAGC
ACTGATTTTTGAATTTGGCGGTATAATTAGCAAAAACCCAGGGTTTGCTTTGATTTATTC
GCGGTAACCATTGGGCAGAAATTCAGAACTCCTTTATAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11030#0      GTTCGAGCGGTGAGGCACAGTCTTGTGACAGGAGAGAGAAGAGAGGAGTTGGTTAGTGCT 60
consensus_11030#2      ------------------------------------------------------------
consensus_11030#1      ------------------------------------------------------------
                                                                                   

consensus_11030#0      ACGCTGCGACGGATGGACCGCGCGACGGAGGAGGAGACGGCGGCGACGGGGCGGCGGATA 120
consensus_11030#2      ------------------------------------------------------------
consensus_11030#1      ------------------------------------------------------------
                                                                                   

consensus_11030#0      CTGGTGGCCGTGGACGAGGGCGACGAGAGCGTCCACGCGCTCAAGTGGTGCCTCGCCAGC 180
consensus_11030#2      ------------------------------------------------------------
consensus_11030#1      ------------------------------------------------------------
                                                                                   

consensus_11030#0      TTCGCCAAGCGCGGCGGCGGCGGGGGCGCGGCGCCGCCGGACACCATCATCCTGCTCTAC 240
consensus_11030#2      ------------------------------------------------------------
consensus_11030#1      ------------------------------------------------------------
                                                                                   

consensus_11030#0      GTCCGGCCGCCGCCGCCCACCTACTCCGTGCTCGACGCCTCCGGCTACGTGTTCTCCGAC 300
consensus_11030#2      ------------------------------------------------------------
consensus_11030#1      ------------------------------------------------------------
                                                                                   

consensus_11030#0      GAGGTGGCCGCCGCCATTGACGGGTACAGCAAGGAGGTGGCGGAGGCGGTGGTGGAGAAG 360
consensus_11030#2      ------------------------------------------------------------
consensus_11030#1      ------------------------------------------------------------
                                                                                   

consensus_11030#0      GCGCAGAAGCTCTGCACGCTCTACGGCAAGGAGGTCGGTGGCGACGGTGAGGCTGGCCAT 420
consensus_11030#2      ------------------------------------------------------------
consensus_11030#1      ------------------------------------------------------------
                                                                                   

consensus_11030#0      GAGATGAAGGTGGAGGTGAAGGTGGCGGTCGGCGACGCCAGGAACGTCATCTGCCAGATG 480
consensus_11030#2      ------------------------------------------------------------
consensus_11030#1      ------------------------------------------------------------
                                                                                   

consensus_11030#0      GCGGACAAGCTCGGCGCCGACGTGCTGGTGATGGGGAGCCATGGCTATGGCCTGTTCAAG 540
consensus_11030#2      ------------------------------------------------------------
consensus_11030#1      ------------------------------------------------------------
                                                                                   

consensus_11030#0      AGGGCTCTGCTTGGAAGTGTCAGTGATTACTGCGTCAGGAACGCCAACTGTCCAGTTCTC 600
consensus_11030#2      ------------------------------------------------------------
consensus_11030#1      ------------------------------------------------------------
                                                                                   

consensus_11030#0      ATCGTCAAGTCGTAGCTGCCACTCACTCCAGTGCTTGTAACTGTGCAGCAGCATGTGTGC 660
consensus_11030#2      ------------------------------------------------------------
consensus_11030#1      ------------------------------------------------------------
                                                                                   

consensus_11030#0      TCTGTCCGGCTTTTTTTTTTGTTTTTGCCTTGTGTTCTGCTTTGTATGTCTACTTTAGTT 720
consensus_11030#2      ------------------------------------------------------------
consensus_11030#1      --------------------------------------GTGCTTGCAGGAGGTCGGTGGC 22
                                                                                   

consensus_11030#0      CGCTTCGCATGTAATCTGCCGGAAGAGGACGTGCTGA--GTGATTACTCAGAACTCTGAA 778
consensus_11030#2      -----------------------AAAGGACGTGTTGA--GTGATTACTCAGAACTTTGAA 35
consensus_11030#1      GACGGTGAGGCTGGCCATGAGATGAAGGTGGAGGTGAAGGTGGCGGTCGGCGACGCAGGA 82
                                                ***  * * ***  ***          **   * *

consensus_11030#0      --GTTATCCAGCAACCTGTATATAGAAGAACTACT--TTCTGTGGAGATGGCAAATT-TA 833
consensus_11030#2      --GTTATCCAGCAACCTGTATATAAAAGAACTACT--TTTTGTGGAGATGGCAAATT-TA 90
consensus_11030#1      ACGTCATCTGCCAGATGGCGGACAAGCTCGGCGCCGACGTGCTGGTGATGGGGAGCCATG 142
                         ** ***   **    *   * *         *        *** *****  *    * 

consensus_11030#0      GTTTT--TCTGTCATCGGCTTCCAC-------TTTTAGCACTGATTTCTGAATTTGGCTG 884
consensus_11030#2      GTTTT--TTTGTCATCGGGTTCCCC-------TTTTAGCACTGATTTTTGAATTTGGCGG 141
consensus_11030#1      GCTATGGCCTGTTCAAGAGGTCACTGAAACGATCTCGTTTTCAATCTCAGAAGCTGTNAG 202
                       * * *    ***    *   **          * *        ** *  ***  **   *

consensus_11030#0      --TATAATTAGCAAA---TACCCAGGGTTTGCTTTGATCTATTCGCGCTAACCATTGCGC 939
consensus_11030#2      --TATAATTAGCAAA---AACCCAGGGTTTGCTTTGATTTATTCGCGGTAACCATTGGGC 196
consensus_11030#1      AGCGCANTTAATCTGCTTTGCATATCATCTGCTTCAATCAGCTCGCGCTCTCGGTGACGA 262
                            * ***          *  *   * *****  **    ***** *  *  *   * 

consensus_11030#0      AGAAATTCAG---AACTCCTTTATAAACAAATCTCTAAGAGAGAGA-------------- 982
consensus_11030#2      AGAAATTCAG---AACTCCTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 253
consensus_11030#1      TGATGTTTAGCTTAATTACGCTATATATGCTCGTTGATTTTGCAGGGCTC---------- 312
                        **  ** **   ** * *  **** *         *      *                

consensus_11030#0      --
consensus_11030#2      AA 255
consensus_11030#1      --