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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1231 fasta sequence
[ACGCGCTCGCTTCCTTCCCNCCTCGCCTCAACGCAAAGNAGNATCCCCCCCTATACCTATTAATACCTCATCTTGTCGTCTCGTATCATCTCATCTCATCACATCAGCACACATCACACGCGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAAGCAAG-AGCGGATCGGGTGCTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCGTTGGTGGCGGCAGCGGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATCGGGAGGCGGGCGTGGCGGCTGCTGCGCCTGGC-GGTGCTC-TGGGCGAGGAAGGGCAGCGCGGTGCAC-AGCCTCCGCCTGCTCAGCAACCTGCGGCGCGCCGGCGT--GGGCCTCGGCGTCGTCGGCCGAGGCGACCG-CTGGGGTACGGCGAGCGGGAGTACTCGATCGAGGAGACGCCGGCGTTCCGGTTCCGCACGCCGTCGGCGCGGGTGCTCCGCCTAATCCCCTGCATCGCCCCCGCCGTCCCGGACACGCCCGGGCTCTACGGCGACGAGGACCGCTACTTC-TTCGCCCGCCGCGACAC-GGAGCCCGAGTGCGGCGGCGGCG-TCGGGTATTAC-GACTA-CAATGGCGAGCCGGGCGAGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCATGCTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCTT-CCTTGAGCATTGATATTGGTTTGGTTCATTGGTTGCGAATTGATATCTGTACATTTTGTGCATTGAGAATAAACGAGCAGAGCAGAAATTTCAGATTCAGGAGGAGGCTTCTTCTTGGACGCGCAGAAGAACATGCAGTTGCTTTGGCTCAATGTAAGCTGTACTGCTGTGTATCCGCATGGTACACTTGCTTGATTCAATTGTGGT]
[+] EMBL OSC782 [ACGCGCTCGCTTCCTTCCCNCCTCGCCTCAACGCAAAGNAGNATCCCCCCCTATACCTATTAATACCTCATCTTGTCGTCTCGTATCATCTCATCTCATCACATCAGCACACATCACACGCGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAAG AAGNAGCGGATCGGGTGCTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCGTTGGTGGCGGCAG NGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATCGGGAGGCGGGCGTGGCGGCTTCTTCGCTTGGCGGGTGCTCTTGGGCGAGGAAGGGCAGCGCGGTGCACAAGCCTCCGCCTGCTCAGCAACCTGCGGCG G CNGCGTTGGGGCCTCGGCGT ]
[+] EMBL OS0960A [ TCACATCAGCACACATCACACGCGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAAGCAAG AGCGGATCGGGTGCTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCGTTGGTGGCGGCAGCGGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATCGGGAGGCGGGCGTGGCGGCTGCTGCGCCTGGC GGTGCTC TGGGCGAGGAAGGGCAGCGCGGTGCAC AGCCTCCGNCTGCTCAGCAACCTGCGGCGCGCCGGCGT GGGCCTCGGCGTCGTCGGCCGAGGCGACCG CTGGGGTACGGCGAGCGGGAGTACTCGAT ]
[+] EMBL AK061293 [ CATCAGCACACATCACACGCGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAAGCAAG AGCGGATCGGGTGCTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCGTTGGTGGCGGCAGCGGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATCGGGAGGCGGGCGTGGCGGCTGCTGCGCCTGGC GGTGCTC TGGGCGAGGAAGGGCAGCGCGGTGCAC AGCCTCCGCCTGCTCAGCAACCTGCGGCGCGCCGGCGT GGGCCTCGGCGTCGTCGGCCGAGGCGACCGCCTGGGGTACGGCGAGCGGGAGTACTCGATCGAGGAGACGCCGGCGTTCCGGTTCCGCACGCCGTCGGCGCGGGTGCTCCGCCTAATCCCCTGCATCGCCCCCGCCGTCCCGGACACGCCCGGGCTCTACGGCGACGAGGACCGCTACTTC TTCGCCCGCCGCGACAC GGAGCCCGAGTGCGGCGGCGGCG TCGGGTATTAC GACTA CAATGGCGAGCCGGGCGAGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCATGCTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCTT CCTTGAGCATTGATATTGGTTTGGTTCATTGGTTGCGAATTGATATCTGTACATTTTGTGCATTGAGAATAAACGAGCAGAGCAGAAATTTCAGATTCAGGAGGAGGCTTCTTCTTGGACGCGCAGAAGAACATGCAGTTGCTTTGGCTCAATGTAAGCTGTACTGCTGTGTATCCGCATGGTACACTTGCTTGATTCAATTGTGGT]
[+] EMBL C74741 [ CACGNGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAA CAAG AGCGGATCGGGTGCTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCGTTGGTGGCGGCA CGGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATCGGGAGGCGGGCGTGGCGGCTGCTGCGCCTGGC GGTGCTC TGGGCGANGAAGGGCA CGCGGTGCAC A NCTCC ]
[+] EMBL BI807256 [ CCCGTACACGCCCGGGCTCT C GCGACGAGGACCGCTACTTCTTTCGCCCGCCGCGACACTGGAGCCCGAGT CGGC GCGGCGTTCGGGTATTACGGACTACCTATGGCGAGCCGGGCGAGTGCGGCGGCGTGGACAACGAGAGCTTCCGCGACGGTGCGATGGAGGA CAGCTCCTCGAGCTGTCCATGCTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCT CAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCNATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTC AATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCTTCCCTTGA CTTTGATATTaaaaaa ]
[+] EMBL AU068939 [ GCGGCGGCG TCGGGTATTAC GACTA CAATGGCGAGCCGGGCGAGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCATGCTGGANGCGAGCGCCGCCGCCGTNACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGANGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTG ]
[+] EMBL CB000051 [ GCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCACGCTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCTT CCTTGAGCATTGATATTGGTTTGGTTCATTGGGTGCGAATTGATATCTGTACATTTTGT ]
consensusID : consensus_11051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence
[CGAGGAGACGCCGGCGTTCCCGGTTCCGCACCCGTCGGCNCGGGTGCTCCGCNTAATCCCCCTGCATCGCCCCCGCCGTACCCGGACACGCCCGGGCTNTACGGCGACGAGGACCGCTACTTCTTCGCCCGCCGCGACACGGAGCCCGAGTGCGGCGGCGGCGTCGGGTATTACGACTACAATGGCGAGCCGGNCGAGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCATGNTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCAAAAAAAAAA]
[+] EMBL AU082966 [CGAGGAGACGCCGGCGTTCCCGGTTCCGCACCCGTCGGCNCGGGTGCTCCGCNTAATCCCCCTGCATCGCCCCCGCCGTACCCGGACACGCCCGGGCTNTACGGCGACGAGGACCGCTACTTCTTCGCCCGCCGCGACACGGAGCCCGAGTGCGGCGGCGGCGTCGGGTATTACGACTACAATGGCGAGCCGGNCGAGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCATGNTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11051#0 ACGCGCTCGCTTCCTTCCCNCCTCGCCTCAACGCAAAGNAGNATCCCCCCCTATACCTAT 60
consensus_11051#1 ------------------------------------------------------------
consensus_11051#0 TAATACCTCATCTTGTCGTCTCGTATCATCTCATCTCATCACATCAGCACACATCACACG 120
consensus_11051#1 ------------------------------------------------------------
consensus_11051#0 CGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAAGCAAGAGCGGATCGGGTG 180
consensus_11051#1 ------------------------------------------------------------
consensus_11051#0 CTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCG 240
consensus_11051#1 ------------------------------------------------------------
consensus_11051#0 TTGGTGGCGGCAGCGGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATC 300
consensus_11051#1 ------------------------------------------------------------
consensus_11051#0 GGGAGGCGGGCGTGGCGGCTGCTGCGCCTGGCGGTGCTCTGGGCGAGGAAGGGCAGCGCG 360
consensus_11051#1 ------------------------------------------------------------
consensus_11051#0 GTGCACAGCCTCCGCCTGCTCAGCAACCTGCGGCGCGCCGGCGTGGGCCTCGGCGTCGTC 420
consensus_11051#1 ------------------------------------------------------------
consensus_11051#0 GGCCGAGGCGACCGCTGGGGTACGGCGAGCGGGAGTACTCGATCGAGGAGACGCCGGCGT 480
consensus_11051#1 -------------------------------------------CGAGGAGACGCCGGCGT 17
*****************
consensus_11051#0 TCC-GGTTCCGCACGCCGTCGGCGCGGGTGCTCCGCCTAATCCCC-TGCATCGCCCCCGC 538
consensus_11051#1 TCCCGGTTCCGCAC-CCGTCGGCNCGGGTGCTCCGCNTAATCCCCCTGCATCGCCCCCGC 76
*** ********** ******** ************ ******** **************
consensus_11051#0 CGT-CCCGGACACGCCCGGGCTCTACGGCGACGAGGACCGCTACTTCTTCGCCCGCCGCG 597
consensus_11051#1 CGTACCCGGACACGCCCGGGCTNTACGGCGACGAGGACCGCTACTTCTTCGCCCGCCGCG 136
*** ****************** *************************************
consensus_11051#0 ACACGGAGCCCGAGTGCGGCGGCGGCGTCGGGTATTACGACTACAATGGCGAGCCGGGCG 657
consensus_11051#1 ACACGGAGCCCGAGTGCGGCGGCGGCGTCGGGTATTACGACTACAATGGCGAGCCGGNCG 196
********************************************************* **
consensus_11051#0 AGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCG 717
consensus_11051#1 AGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCG 256
************************************************************
consensus_11051#0 AGCTGTCCATGCTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCA 777
consensus_11051#1 AGCTGTCCATGNTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCA 316
*********** ************************************************
consensus_11051#0 AGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCAT 837
consensus_11051#1 AGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCAT 376
************************************************************
consensus_11051#0 GGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAAT 897
consensus_11051#1 GGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAAT 436
************************************************************
consensus_11051#0 AAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACA 957
consensus_11051#1 AAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACA 496
************************************************************
consensus_11051#0 GAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTAT 1017
consensus_11051#1 GAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTAT 556
************************************************************
consensus_11051#0 TTTTCTTCCTTGAGCATTGATATTGGTTTGGTTCATTGGTTGCGAATTGATATCTGTACA 1077
consensus_11051#1 TTTTCAAAAAAAAAA--------------------------------------------- 571
***** *
consensus_11051#0 TTTTGTGCATTGAGAATAAACGAGCAGAGCAGAAATTTCAGATTCAGGAGGAGGCTTCTT 1137
consensus_11051#1 ------------------------------------------------------------
consensus_11051#0 CTTGGACGCGCAGAAGAACATGCAGTTGCTTTGGCTCAATGTAAGCTGTACTGCTGTGTA 1197
consensus_11051#1 ------------------------------------------------------------
consensus_11051#0 TCCGCATGGTACACTTGCTTGATTCAATTGTGGT 1231
consensus_11051#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||