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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11056#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 968 fasta sequence
[TCCGCACCAAACTCCTCGTGGTGGTTTCGCAGCTCTCCTGCGAGCGAATTCTAGGGTTTGGGAGGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAGCATGAGCTCGGCGCAGGATCCGTTCTACATCGTCCGGGAGGAGATCCAGGACTCGATTGATAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACA-GGAGAACAT-GTTCATT-T-GA-CAAAGGAGCTTCATACCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAGTTGGAAAAGACAATCTTAGTTGCATCAAGAGATCCAGCGTACTATGGACTGGACGAAGTTGAGCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAGATCTGTTGAAAAGGGGAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGA-TAGACAGCTTCTACTTATGAGGCAGCA-GGATGAGGAACTTGAT-GAGC-TTAGCG-AAAGTGTTCAAAGGATT-GGT-GGT-GTAGGG-CTAACCATA-CACGAAGAGCTGTCTGGACAGGAAAGGATCTTA-A-ACG-ACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAGAGTGGCGA-TGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAATACACGAGTTGCTCATATCTTTCAAATCCTACCTGATTATTGCTCCATCGTTAAAAAAAAAAAAAAAAA]
[+] EMBL CF297106 [TCCGCACCAAACTCCTCGTGGTGGTTTCGCAGCTCTCCTGCGAGCGAATTCTAGGGTTTGGGAGGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAGCATGAGCTCGGCGCAGGATCCGTTCTACATCGTCCGGGAGGAGATCCAGGACTCGATTGATAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACA GGAGAACAT GTTCATT T GA CAAAGGAGCTTCATACCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAGTTGGAAAAGACAATCTTAGTTGCATCAAGAGATCCAGCGTACTATGGACTGGACGAAGTTGAGCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAGATCTGTTGAAAAGGGGAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGA TAGACAGCTT ]
[+] EMBL AK067544 [ CTCCTCGTGGTGGTTTCGCAGCTCTCCTGCGAGCGAATTCTAGGGTTTGGGAGGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAGCATGAGCTCGGCGCAGGATCCGTTCTACATCGTCCGGGAGGAGATCCAGGACTCGATTGATAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACA GGAGAACAT GTTCATT T GA CAAAGGAGCTTCATACCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAGTTGGAAAAGACAATCTTAGTTGCATCAAGAGATCCAGCGTACTATGGACTGGACGAAGTTGAGCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAGATCTGTTGAAAAGGGGAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGA TAGACAGCTTCTACTTATGAGGCAGCA GGATGAGGAACTTGAT GAGC TTAGCG AAAGTGTTCAAAGGATT GGT GGT GTAGGG CTAACCATA CACGAAGAGCTGTCTGGACAGGAAAGGATCTTA A ACG ACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAGAGTGGCGA TGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAATACACGAGTTGCTCATATCTTTCAAATCCTACCTGA ]
[+] EMBL AU101806 [ GCAGCTCTCCTGCGAGCGAATTCTAGGGTTTGGGAGGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAGCATGAGCTCGGCGCAGGATCCGTTCTACATCGTCCGGGAGGAGATCCAGGACTCGATTGATAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACAGGGAGAACATGGTTCATTGTCGACCAAAGcg ]
[+] EMBL AU183871 [ CTCTCCTGCGAGCGAATTCTAGGGTTTGGGATGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAGCATGAGCTCGGCGCAGGATCCGTTCTACATCNTCCGGGAGGAGATCCAGGACTCGATTGATAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACA GGAGAACAT GTTCATT T GA CAAAGGAGCTTCATACCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAGTTGGAAAAGACAATCTTAGTTGCATCAAGAGATCCAGCGTACTATGGACTGGACGAAGTTGAGCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAGATCTGTTGAAAAGGGGAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGA TAGACAGCTTCTACTTATGAGGCAGCA GGATGAGGAACTTGAT GAGC TTAGCG AAAGTGTTCAAAGG ]
[+] EMBL AU101807 [ TGATGACTTCATTGCTTCAGAATCAGATTAGACAGCTTCTACTTATGAGGCAGCA GGATGAGGAACTTGATCGAGCTTTAGCGAAAAGTGTTCAAAGGATTCGGTNGGTCGTAGGGCCTAACCATA CACGAAGAGCTGTCTGGACAGGAAAGGATCTTA A ACGNACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAGAGTGGCGA TGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAATACACGAGTTGCTCATATCTTTCAAATCCTACCTGATTATTGCTCCA AAAAAAA ]
[+] EMBL BM038797 [ CAGA TAGACAGCTTCTACTTATGAGGCAGCACGGATGAGGAACTTGAT GAGC TTAGCG AAAGTGTTCAAAGGATT GGT GGT GTAGGG CTAACCATAGCGCGAAGAGCTGTCTGGACAGGAAAGGATCTTANAGACG ACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAGAGTGGCGAGTGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAAC AATACACGAGTTGCTCATATCTTTC AATCCTACCTGATTATTGCTCCATCGTTAAAAAAAA ]
[-] EMBL CF297105 [ ATGAGGAACTTGAT GAGT TTAGCG AAAGTGTTCAAAGGATT GGT GGT GTAGGG CTACCCATA CACGAAGAGCTGTTTGGACAGGAAAGGTTTTTA A ACG CCCTAAGCTTGGAGATGGAAATTATTTCAAACAGATTTGATTTGGTGCAGAAAAGAGTGGCGA TGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGGGGTTCTGTTCATTAAACTTTTGGGGTGGGTGTTCTTGACATAACGCATTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTCCCTCCCTACTGTAAGCTGTGGAGACCAGAAAACAAATACACGAGTTGTTCATATCTTTCAAATCCTCCCTGATTATTGCTCCAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11056#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[GGTCTGGTCAACCTGTAAAGCATGTGTGCCAGGGGATAAGTTGGAAAGGCAATCTTAGTGCCTCAAGAGGTCCAGCGTCCTATGGCCGGGACGAAGTGAGCTTTTTAGCCGACGAACCGGATGGTTCTGGTGGTAATCAGGTTGGTGCAGTCAGGAGATCTGGTAAAAGGGGAAGAGTAATTCACCTTTCTGGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGATAGACAGCTTCTACTTATGAGGCAGCAGGATGAGGAACTTGATGAGCTTAGCGAAAGTGTTCAAAGGATTGGTGGTGTAGGGCTAACCATACACGAAGAGCTGTCTGGACAGGAAAGGATCTTAAACGACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTTCAGAAAAGAGTGGCGATGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAATACCCGAGTTGCTCATATCTTTCAAATCCTCAAAAAAAAAAAAAAA]
[-] EMBL CA763109 [GGTCTGGTCAACCTGTAAAGCATGTGTGCCAGGGGATAAGTTGGAAAGGCAATCTTAGTGCCTCAAGAGGTCCAGCGTCCTATGGCCGGGACGAAGTGAGCTTTTTAGCCGACGAACCGGATGGTTCTGGTGGTAATCAGGTTGGTGCAGTCAGGAGATCTGGTAAAAGGGGAAGAGTAATTCACCTTTCTGGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGATAGACAGCTTCTACTTATGAGGCAGCAGGATGAGGAACTTGATGAGCTTAGCGAAAGTGTTCAAAGGATTGGTGGTGTAGGGCTAACCATACACGAAGAGCTGTCTGGACAGGAAAGGATCTTAAACGACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTTCAGAAAAGAGTGGCGATGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAATACCCGAGTTGCTCATATCTTTCAAATCCTCAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11056#0 TCCGCACCAAACTCCTCGTGGTGGTTTCGCAGCTCTCCTGCGAGCGAATTCTAGGGTTTG 60
consensus_11056#1 ------------------------------------------------------------
consensus_11056#0 GGAGGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAG 120
consensus_11056#1 ------------------------------------------------------------
consensus_11056#0 CATGAGCTCGGCGCAGGATCCGTTCTACATCGTCCGGGAGGAGATCCAGGACTCGATTGA 180
consensus_11056#1 ------------------------------------------------------------
consensus_11056#0 TAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACAGGAGAACATGT 240
consensus_11056#1 ------------------------------------------------------------
consensus_11056#0 TCATTTGACAAAGGAGCTTCATACCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAGTT 300
consensus_11056#1 ---------------GGTCTGGTCAACCTGT-AAAGCAT-GTGTGCCAGG-GGATAAGTT 42
* * * * **** ******* * *** **** **** ****
consensus_11056#0 GGAAAAGACAATCTTAGTTGCATCAAGAGATCCAGCGTACTATGGACTGGACGAAGTTGA 360
consensus_11056#1 GGAAAGG-CAATCTTAGT-GCCTCAAGAGGTCCAGCGTCCTATGGCCGGGACGAAGT-GA 99
***** * ********** ** ******* ******** ****** * ********* **
consensus_11056#0 GCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAG 420
consensus_11056#1 GCTTTTTAGCCGACG-AACCGGAT-GGTTCTGGTGGTAATCAGGTTGGTGCAGTCAGGAG 157
***** *** ***** *** **** ******* * ************ ************
consensus_11056#0 ATCTGTTGAAAAGGGGAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAG 480
consensus_11056#1 ATCTGGT-AAAAGGGGAAGAGTAATTCACCTTTCTGGGCGCACCAAGACATGGGCACAAG 216
***** * ******************** ****** ************************
consensus_11056#0 CAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGATAG 540
consensus_11056#1 CAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGATAG 276
************************************************************
consensus_11056#0 ACAGCTTCTACTTATGAGGCAGCAGGATGAGGAACTTGATGAGCTTAGCGAAAGTGTTCA 600
consensus_11056#1 ACAGCTTCTACTTATGAGGCAGCAGGATGAGGAACTTGATGAGCTTAGCGAAAGTGTTCA 336
************************************************************
consensus_11056#0 AAGGATTGGTGGTGTAGGGCTAACCATACACGAAGAGCTGTCTGGACAGGAAAGGATCTT 660
consensus_11056#1 AAGGATTGGTGGTGTAGGGCTAACCATACACGAAGAGCTGTCTGGACAGGAAAGGATCTT 396
************************************************************
consensus_11056#0 AAACGACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAG 720
consensus_11056#1 AAACGACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTTCAGAAAAG 456
*************************************************** ********
consensus_11056#0 AGTGGCGATGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCT 780
consensus_11056#1 AGTGGCGATGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCT 516
************************************************************
consensus_11056#0 TGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCC 840
consensus_11056#1 TGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCC 576
************************************************************
consensus_11056#0 AAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAAT 900
consensus_11056#1 AAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAAT 636
************************************************************
consensus_11056#0 ACACGAGTTGCTCATATCTTTCAAATCCTACCTGATTATTGCTCCATCGTTAAAAAAAAA 960
consensus_11056#1 ACCCGAGTTGCTCATATCTTTCAAATCCT---------------------CAAAAAAAAA 675
** ************************** *********
consensus_11056#0 AAAAAAAA 968
consensus_11056#1 AAAAAA-- 681
******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||