These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1674 fasta sequence [CGGGCCGCGCAGCTGCTGCACTCCAACTCTCCAAGAGAGAAGGAATCGCGACTTCGCCGCCGCGGCCGCAACACCGACTTCGCCGGCGGCGGCGGCGATGGGCAACGCGCAGGCTTCCGCCTCCTCCACCAGCTCCCCCCGCTTCTCCATGGCGTCCAGGGCCTTCTCGAGGCAGGAGCTGGACGACCTCCGCGCGCTGTTCGTCTCGCTGGCGGCGCAGTCGCAGACCGGCGGCCGTGCCATCTCCCGCCCCGTCTTCCTCGAGTATTTCGGGATACGTGGGGCGCTCGGGGATCGGCTGTTCCAGCTGGTGGCGAGGGAGAGCGGCGGGGGTGAGGGGGTCACCTTCGAGGACTTGATCGTCTCCAAAGCAACATACGAGAGAGGAACTCGAGATGAAGTTGATGAATTCATTTATCAACTATGTGATGTTACAGGAGATGAAGTCTTAGAAAGGTCTGATCTGGAAACTATCTTGGCATCTATTCGTGAAACCATATTTTCAGAAAATAAGGAAGCTGGGGAAGGCTCAAACAAGAGGACATTTGAAGCATTTATCAACTCTGCAGTATTTTCGAAGGATGCTGAAGGAGTCGCAAGGAAGTCTATGTCGCTATCAGACTTTAGGAGCTGGTGCATTCTCATTCCATCCTTGAGGAAGTTCCTTGGAAGTTTGTTGATGCCTCCTGATTCAGGCAGACCAGGCTTCCAAGTACCAGCGCTTCATTACCTAGAAAACATCTCCCCAGATTTGCTACTTTTAAATAAAGAGTATGCTTGGCATATTGGAGGTGG-TTTTTCACAACAGGAGGTGCAAGAATGGAGGCTTCTATATCACAGTTCTCTTCATGGACAAAGCTTCAACACTTTCTTAGGCAATGTAACGAATGGAGATGCACAGACTGTTATCATCGTTAAAGATACTGAAGGATTTGTTTTTGGTGGATACGCATCACATCCTTGGGAAAGGCACAGTGATTTTTATGGTGATATGAAAACATTCCTGTTCAAGTTATATCCTGAAGCATCCATTTTCCGCCCTACAGGAGGGAACAGAAACCTCCAATGGTGTGCCGTGAACTTCAGCTCTGACTCCATTCCA-AATGGCATTGGCTTTGGAGGGCAGCCGCATCACTTCGGTTTTTTCCTATCCGCAAATTTTGATCAAGGGCACTCATTTACATGTACCACATTCACCAGTCCTGCCCTTTCAAAGACAAATAGGTTCAGGCCAGAGGTAATTGAATGTTGGGGCATACAAACGAAGGGGGCACTTGATGAAAAGGCAGAGCTTGTCAAGGGGACAGTCCTAGAGAGATTCAAGGAGGATCGGAACATGCTGAAGCTGGTTGGTTTGGCGAACGCGAGTGATTGACAGCTGAAAGAGGATCACCACGGCAAATTCCTGAGGACCCTGTACAGCACAATTTTACAGAAGAAGATAGATCCTTATATACGATTGTCACTGCTGAACTGAGCTTTATGAAACTTGTTTAGCTGCAAGTTGGTCTGTACTGTGTGTTGTGGCTGTATTAGATCAACTTCAATGCCGAATTCGAGATATGATGAGAGAGAAACTGACTGTATTTTGAAACATTGTCTATTTGTTTGTTAATATAAAT-GTTGACTGCTGAATATAGATGTATGACATGTACTTTAATAAAAAGATACTCC] [+] EMBL AK064843 [CGGGCCGCGCAGCTGCTGCACTCCAACTCTCCAAGAGAGAAGGAATCGCGACTTCGCCGCCGCGGCCGCAACACCGACTTCGCCGGCGGCGGCGGCGATGGGCAACGCGCAGGCTTCCGCCTCCTCCACCAGCTCCCCCCGCTTCTCCATGGCGTCCAGGGCCTTCTCGAGGCAGGAGCTGGACGACCTCCGCGCGCTGTTCGTCTCGCTGGCGGCGCAGTCGCAGACCGGCGGCCGTGCCATCTCCCGCCCCGTCTTCCTCGAGTATTTCGGGATACGTGGGGCGCTCGGGGATCGGCTGTTCCAGCTGGTGGCGAGGGAGAGCGGCGGGGGTGAGGGGGTCACCTTCGAGGACTTGATCGTCTCCAAAGCAACATACGAGAGAGGAACTCGAGATGAAGTTGATGAATTCATTTATCAACTATGTGATGTTACAGGAGATGAAGTCTTAGAAAGGTCTGATCTGGAAACTATCTTGGCATCTATTCGTGAAACCATATTTTCAGAAAATAAGGAAGCTGGGGAAGGCTCAAACAAGAGGACATTTGAAGCATTTATCAACTCTGCAGTATTTTCGAAGGATGCTGAAGGAGTCGCAAGGAAGTCTATGTCGCTATCAGACTTTAGGAGCTGGTGCATTCTCATTCCATCCTTGAGGAAGTTCCTTGGAAGTTTGTTGATGCCTCCTGATTCAGGCAGACCAGGCTTCCAAGTACCAGCGCTTCATTACCTAGAAAACATCTCCCCAGATTTGCTACTTTTAAATAAAGAGTATGCTTGGCATATTGGAGGTGGTTTTTTCACAACAGGAGGTGCAAGAATGGAGGCTTCTATATCACAGTTCTCTTCATGGACAAAGCTTCAACACTTTCTTAGGCAATGTAACGAATGGAGATGCACAGACTGTTATCATCGTTAAAGATACTGAAGGATTTGTTTTTGGTGGATACGCATCACATCCTTGGGAAAGGCACAGTGATTTTTATGGTGATATGAAAACATTCCTGTTCAAGTTATATCCTGAAGCATCCATTTTCCGCCCTACAGGAGGGAACAGAAACCTCCAATGGTGTGCCGTGAACTTCAGCTCTGACTCCATTCCA AATGGCATTGGCTTTGGAGGGCAGCCGCATCACTTCGGTTTTTTCCTATCCGCAAATTTTGATCAAGGGCACTCATTTACATGTACCACATTCACCAGTCCTGCCCTTTCAAAGACAAATAGGTTCAGGCCAGAGGTAATTGAATGTTGGGGCATACAAACGAAGGGGGCACTTGATGAAAAGGCAGAGCTTGTCAAGGGGACAGTCCTAGAGAGATTCAAGGAGGATCGGAACATGCTGAAGCTGGTTGGTTTGGCGAACGCGAGTGATTGACAGCTGAAAGAGGATCACCACGGCAAATTCCTGAGGACCCTGTACAGCACAATTTTACAGAAGAAGATAGATCCTTATATACGATTGTCACTGCTGAACTGAGCTTTATGAAACTTGTTTAGCTGCAAGTTGGTCTGTACTGTGTGTTGTGGCTGTATTAGATCAACTTCAATGCCGAATTCGAGATATGATGAGAGAGAAACTGACTGTATTTTGAAACATTGTCTATTTGTTTGTTAATATAAAT GTTGACTGCTGAATATAGATGTATGACATGTACTTTAATAAAAAGATACTCC] [+] EMBL CB654851 [ gcgatACCTCCGCGCGCTGTTCGTCTCGCTGGCGGCGCAGTCGCTGACCGGCGGCCGTGCCATCTCCCGCCCCGTCTTCCTCGAGTATTTCGGGATACGTGGGGCGCTCGGGGATCGGCTGTTCCAGCTGGTGGCGAGGGAGAGCGGCGGGGGTGAGGGGGTCACCTTCGAGGACTTGATCGTCTCCAAAGCAACATACGAGAGAGGAACTCGAGATGAAGTTGATGAATTCATTTATCAACTATGTGATGTTACAGGAGATGAAGTCTTAGAAAGGTCTGATCTGGAAACTATCTTGGCATCTATTCGTGAAACCATATTTTCAGAAAATAAGGAAGCTGGGGAAGGCTCAAACAAGAGGACATTTGAAGCATTTATCAACTCTGCAGTATTTTCGAAGGATGCTGAAGGAGTCGCAAGGAAGTCTATGTCGCTATCAGACTTTAGGAGCTGGTGCATTCTCATTCCATCCTTGAGGAAGTTCCTTGGAAGTTTGTTGATGCCTCCTGATTCAGGCAGACCAGGCTTCCAAGTACCAGCGCTTCATTACCTAGAAAACATCTCCCCAGATTTGCTACTTTTAAATAAAGAGTATGCTTGGCATATTGGAGGTGG TTTTTCACAACAGGAGGTGCAAGAATGGAGGCTTCTATATCACAGTTCTCTTCATGGACAAAGCTTCAACACTTTCTTAGGCAATGTAACGAATGGAGATGCACAGACTGTTATCATCGTTAAAGATACTGAAGGATTTGTTTTTGGTGGATACGCATCACATCCTTGGGAAAGGCACAGTGATTTTTATGGTGATATGAAAACATTCCTGTTCAAGTTATATCCTGAAGC ] [+] EMBL CB644881 [ AGGTCCTTTATGGAAACTATCTTGGCATCTATTCGTGAAACCATATTTTCAGAAAATAAGGAAGCTGGGGAAGGCTCAAACAAGAGGACATTTGAAGCATTTATCAACTCTGCAGTATTTTCGAAGGATGCTGAAGGAGTCGCAAGGAAGTCTATGTCGCTATCAGACTTTAGGAGCTGGTGCATTCTCATTCCATCCTTGAGGAAGTTCCTTGGAAGTTTGTTGATGCCTCCTGATTCAGGCAGACCAGGCTTCCAAGTACCAGCGCTTCATTACCTAGAAAACATCTCCCCAGATTTGCTACTTTTAAATAAAGAGTATGCTTGGCATATTGGAGGTGG TTTTTCACAACAGGAGGTGCAAGAATGGAGGCTTCTATATCACAGTTCTCTTCATGGACAAAGCTTCAACACTTTCTTAGGCAATGTAACGAATGGAGATGCACAGACTGTTATCATCGTTAAAGATACTGAAGGATTTGTTTTTGGTGGATACGCATCACATCCTTGGGAAAGGCACAGTGATTTTTATGGTGATATGAAAACATTCCTGTTCAAGTTATATCCTGAAGCATCCATTTTCCGCCCTACAGGAGGGAACAGAAACCTCCAATGGTGTGCCGTGAACTTCAGCTCTGACTCCATTCCA AATGGCATTGGCTTTGGAGGGCAGCCGCATCACTTCGGTTTTTTCCTATCCGCAAATTTTGATCAAGGGCACTCATTTACATGTA ] [+] EMBL CA767453 [ gggGGACATTTGAAGCATTTAT AACTCTGCAGTATTTTCGAAGGATGCTGAAGGAGTCGCAAGGAAGTCTATGTCGCTATCAGACTTTAGGAGCTGGTGCATTCTCATTCCATCCTTGAGGAAGTTCCTTGGAAGTTTGTTGATGCCTCCTGATTCAGGCAGACCAGGCTTCCAAGTACCAGCGCTTCATTACCTAGAAAACATCTCCCCAGATTTGCTACTTTTAAATAAAGAGTATGCTTGGCATATTGGAGGTGG TTTTTCACAACAGGAGGTGCAAGAATGGAGGCTTCTATATCACAGTTCTCTTCATGGACAAAGCTTCAACACTTTCTTAGGCAATGTAACGAATGGAGATGCACAGACTGTTATCATCGTTAAAGATACTGAAGGATTTGTTTTTGGTGGATACGCATCACATCCTTGGGAAAGGCACAGTGATTTTTATGGTGATATGAAAACATTCCTGTTCAAGTTATATCCTGAAGCATCCATTTTCCGCCCTACAGGAGGGAACAGAAACCTCCAATGGTGTGCCGTGAACTTCAGCTCTGACTCCATTCCA AATGGCATTGGCTTTGGAGGGCAGCCGCATCACTTCGGTTTTTTCCTATCCGCAAATTTTGATCAAGGGCACTCATTTACATGTACCACATTCACCAGTCCTGCCCTTTCAAAGACAAATAGGCTCAGGCCAGAGGTAATTGAATGGTGGGGCATACAAACGAAGGGGGCACTTGATGAAAAGGCAGAGCTTGTCAAGGGGACAGTCCTAGAGAGGATCAAGGAGGATCGGA ] [-] EMBL CB644882 [ TACGCATCACATCCCTGGGAAAGGCACAGTGATTTTTATGGTGATATGAAAACATTCCTGTTCAAGTTATATCCTGAAGCATCCATTTTCCGCCCTACAGGAGGGAACAGAAACCTCCAATGGTGTGCCGTGAACTTCAGCTCTGACTCCATTCCA AATGGCATTGGCTTTGGAGGGCAGCCGCATCACTTCGGTTTTTTCCTATCCGCAAATTTTGATCAAGGGCACTCATTTACATGTACCACATTCACCAGTCCTGCCCTTTCAAAGACAAATAGGTTCAGGCCAGAGGTAATTGAATGTTGGGGCATACAAACGAAGGGGGCACTTGATGAAAAGGCAGAGCTTGTCAAGGGGACAGTCCTAGAGAGATTCAAGGAGGATCGGAACATGCTGAAGCTGGTTGGTTTGGCGAACGCGAGTGATTGACAGCTGAAAGAGGATCACCACGGCAAATTCCTGAGGACCCTGTACAGCACAATTTTACAGAAGAAGATAGATCCTTATATACGATTGTCACTGCTGAACTGAGCTTTATGAAACTTGTTTAGCTGCAAGTTGGTCTGTACTGTGTGTTGTGGCTGTATTAGATCAACTTCAATGCCGAATTCGAGATATGATGAGAGAGAAACTGACTGTATTTTGAAACATTGTCTATTTGTTTGTTAATATAAAT GTTGACTGCTGAATATAGATGTATGCCATAAGGTTTAATAAAAAGATACTC ] [+] EMBL BQ909015 [ gtCCGTGAACTTCAGCTCTGACTCCATTCCATAATGGCATTGGCTTTGGAGGGCAGCCGCATCACTTCAGTTTTTTCCTATCCGCAAATTTTGATCAAGGGCACTCATTTACATGTACCACATTCACCAGTCCTCCCCTTTCAAAGACAAATAGGTTCAGGCCAGAGGTAATTGAATGTTGGGGCATACNAACGAAGGGGGCACTTGATGAAAAGGCAGAGCTTGTCAAGGGGACAGTCCTAGAGAGATTCAAGGAGGATCGGAACATGCTGAAGCTGGTTGGTTTGGCGAACGCGAGTGATTGACAGCTGAAAGAGGATCACCACGGCAAATTCCTGAGGACCCTGTACAGCACAATTTTACAGAAGAAGATAGATCCTTATATACGATTGTCACTGCTGAACTGAGCTTTATGAAACTTGTTTAGCTGCAAGTTGGTCTGTACTGTGTGTTGTGGCTGTATTAGATCAACTTCAATGCCGAATTCGAGATATGATGAGAGAGAAACTGACTGTATTTTGAAACATTGTCTATTTGTTTGTTAATATAAATCNTTGACTGCTGAATATAGATGTAaaaaaa ] [+] EMBL CF311516 [ GGGACAGTCCTAGAGAGATTCAAGGAGGATCGGAACATGCTGAAGCTGGTTGGTTTGGCGAACGCGAGTGATTGACAGCTGAAAGAGGATCACCACGGCAAATTCCTGAGGACCCTGTACAGCACAATTTTACAGAAGAAGATAGATCCTTATATACGATTGTCACTGCTGAACTGAGCTTTATGAAACTTGTTTAGCTGCAAGTTGGTCTGTACTGTGTGTTGTGGCTGTATTTGATCAACTTCAATGCCGAATTCGAGATATGATGAGAGAGAAACTGACTGTATTTTGAAACATTGTCTATTTGTTTGTTAATATAAAT GTTGACTGCTGAATATAGATGTATGACATGTACTTTAATAAAAAGATACTC ] consensusID : consensus_11068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence [AGAAGAAGATAGATCCTTATATACGATTGTCCCTGTTGAACTGAGCTTTATGAAACTTGTTTAGCGGCAAGTTGGTTTGAACTGTGTGTTGGGGCTGTATTTGTATCAACTTCAAAGCCGAATTCGAGATTTGATGAGAGAGAAACTGTTTGTTTTTTAAAACATTGTCTATTTGTTTGTTAAAAAAAAAGTTGCCTGCTAAAAAAAAATGTACCCCCTGTTTTTTAAAAAAAAAAAACTCCCTTCTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF311517 [AGAAGAAGATAGATCCTTATATACGATTGTCCCTGTTGAACTGAGCTTTATGAAACTTGTTTAGCGGCAAGTTGGTTTGAACTGTGTGTTGGGGCTGTATTTGTATCAACTTCAAAGCCGAATTCGAGATTTGATGAGAGAGAAACTGTTTGTTTTTTAAAACATTGTCTATTTGTTTGTTAAAAAAAAAGTTGCCTGCTAAAAAAAAATGTACCCCCTGTTTTTTAAAAAAAAAAAACTCCCTTCTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11068#0 CGGGCCGCGCAGCTGCTGCACTCCAACTCTCCAAGAGAGAAGGAATCGCGACTTCGCCGC 60 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 CGCGGCCGCAACACCGACTTCGCCGGCGGCGGCGGCGATGGGCAACGCGCAGGCTTCCGC 120 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 CTCCTCCACCAGCTCCCCCCGCTTCTCCATGGCGTCCAGGGCCTTCTCGAGGCAGGAGCT 180 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 GGACGACCTCCGCGCGCTGTTCGTCTCGCTGGCGGCGCAGTCGCAGACCGGCGGCCGTGC 240 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 CATCTCCCGCCCCGTCTTCCTCGAGTATTTCGGGATACGTGGGGCGCTCGGGGATCGGCT 300 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 GTTCCAGCTGGTGGCGAGGGAGAGCGGCGGGGGTGAGGGGGTCACCTTCGAGGACTTGAT 360 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 CGTCTCCAAAGCAACATACGAGAGAGGAACTCGAGATGAAGTTGATGAATTCATTTATCA 420 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 ACTATGTGATGTTACAGGAGATGAAGTCTTAGAAAGGTCTGATCTGGAAACTATCTTGGC 480 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 ATCTATTCGTGAAACCATATTTTCAGAAAATAAGGAAGCTGGGGAAGGCTCAAACAAGAG 540 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 GACATTTGAAGCATTTATCAACTCTGCAGTATTTTCGAAGGATGCTGAAGGAGTCGCAAG 600 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 GAAGTCTATGTCGCTATCAGACTTTAGGAGCTGGTGCATTCTCATTCCATCCTTGAGGAA 660 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 GTTCCTTGGAAGTTTGTTGATGCCTCCTGATTCAGGCAGACCAGGCTTCCAAGTACCAGC 720 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 GCTTCATTACCTAGAAAACATCTCCCCAGATTTGCTACTTTTAAATAAAGAGTATGCTTG 780 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 GCATATTGGAGGTGGTTTTTCACAACAGGAGGTGCAAGAATGGAGGCTTCTATATCACAG 840 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 TTCTCTTCATGGACAAAGCTTCAACACTTTCTTAGGCAATGTAACGAATGGAGATGCACA 900 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 GACTGTTATCATCGTTAAAGATACTGAAGGATTTGTTTTTGGTGGATACGCATCACATCC 960 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 TTGGGAAAGGCACAGTGATTTTTATGGTGATATGAAAACATTCCTGTTCAAGTTATATCC 1020 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 TGAAGCATCCATTTTCCGCCCTACAGGAGGGAACAGAAACCTCCAATGGTGTGCCGTGAA 1080 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 CTTCAGCTCTGACTCCATTCCAAATGGCATTGGCTTTGGAGGGCAGCCGCATCACTTCGG 1140 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 TTTTTTCCTATCCGCAAATTTTGATCAAGGGCACTCATTTACATGTACCACATTCACCAG 1200 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 TCCTGCCCTTTCAAAGACAAATAGGTTCAGGCCAGAGGTAATTGAATGTTGGGGCATACA 1260 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 AACGAAGGGGGCACTTGATGAAAAGGCAGAGCTTGTCAAGGGGACAGTCCTAGAGAGATT 1320 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 CAAGGAGGATCGGAACATGCTGAAGCTGGTTGGTTTGGCGAACGCGAGTGATTGACAGCT 1380 consensus_11068#1 ------------------------------------------------------------ consensus_11068#0 GAAAGAGGATCACCACGGCAAATTCCTGAGGACCCTGTACAGCACAATTTTACAGAAGAA 1440 consensus_11068#1 -----------------------------------------------------AGAAGAA 7 ******* consensus_11068#0 GATAGATCCTTATATACGATTGTCACTGCTGAACTGAGCTTTATGAAACTTGTTTAGCTG 1500 consensus_11068#1 GATAGATCCTTATATACGATTGTCCCTGTTGAACTGAGCTTTATGAAACTTGTTTAGCGG 67 ************************ *** ***************************** * consensus_11068#0 CAAGTTGGTCTGTACTGTGTGTTGTGGCTGTATTAG-ATCAACTTCAATGCCGAATTCGA 1559 consensus_11068#1 CAAGTTGGTTTGAACTGTGTGTTGGGGCTGTATTTGTATCAACTTCAAAGCCGAATTCGA 127 ********* ** *********** ********* * *********** *********** consensus_11068#0 GATATGATGAGAGAGAAACTGACTGTATTTTGAAACATTGTCTATTTGTTTGTTAATATA 1619 consensus_11068#1 GATTTGATGAGAGAGAAACTGTTTGTTTTTTAAAACATTGTCTATTTGTTTGTTAAAAAA 187 *** ***************** *** **** ************************ * * consensus_11068#0 AATGTTGACTGCTGAATATAGATGTATGACATGTACTTTAATAAAAAGATACTCC----- 1674 consensus_11068#1 AAAGTTGCCTGCTAAAAAAAAATGTACCCCCTGTTTTTTAAAAAAAAAAAACTCCCTTCT 247 ** **** ***** ** * * ***** * *** ***** ***** * ***** consensus_11068#0 -------------------------------------------- consensus_11068#1 TTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 291 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||