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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 948 fasta sequence
[CGGAGGAGCGCCTATCTGAAGTCCAACACCCGTCCAGGCACCGGCTCTCCGCCGCTCGAAGCTTCTCTCTTCTCACCGGAATCTCGAGAGCACAGCGCCGCCCCGACGACGAGATCCCTCACCGGCGCCGCCGCCGCCGCGGCCAGGAGGCCGAGGGGCCATGACGACCATCCGCCGGTTCTGCTGCGACGACCTCCTCCGCTTCTCCTCCGTCAACCTCGACCACCTCACCGAGACCTTCAACATGTCCTTCTACATGACGTACATGGCTCGCTGGCCCGACTACTTCCACGCCGCCGTCAGCCCCGGGGACCGCGTCATGGGATACATCATGGGTAAGGTTGAAGGACAAGGTGAATCTTGGCATGGACATGTTACAGCAGTGTCTGTTGCCACAGAATTTCGGAGGCAGAAGCTAGCCAAAAAACTTATGAACCTTTTGGAGGAAATCAGTGACAAGATGGATAAGGCCTACTTTGTGGATCTCTTCGTAAGAGCATCTAACATGCCAGCAATAAGGATGTATGAAAAGCTTGGCTATGTGGTTTATCGAAGGGTGCTCCGCTATTACTCAGGGGAAGAAGATGGCCTTGATATGAGGAAAGCTTTGTCACAAGACGTTGAAAAGAAGTCCATCATACCACTGAAGAGACCAATAACACCGGATGAACTTGAATATGATTGAAGTTAACTTCTAGTTACTTCCAGTGTTTTGTTTGCTGTTAACTTCTATGGTGATTTGCCAAGTGTCTTTTGTCTCCAGTAGTATCATCTAGTGATCGTGCTGTTTTCTTTTCTGCATCCTGATAAGATTCAACATAACTCTGAAGGTGATTCTATCGTTTTGGAATGGAATGCAGCACTTAGTAAGTAGTCTATCTTGGAATGAGGTGCTATCTTGTAACCGTACCGTTATTTTCTTGTATCGAGGAGTTCCACGTCTGTATC]
[+] EMBL AK069110 [CGGAGGAGCGCCTATCTGAAGTCCAACACCCGTCCAGGCACCGGCTCTCCGCCGCTCGAAGCTTCTCTCTTCTCACCGGAATCTCGAGAGCACAGCGCCGCCCCGACGACGAGATCCCTCACCGGCGCCGCCGCCGCCGCGGCCAGGAGGCCGAGGGGCCATGACGACCATCCGCCGGTTCTGCTGCGACGACCTCCTCCGCTTCTCCTCCGTCAACCTCGACCACCTCACCGAGACCTTCAACATGTCCTTCTACATGACGTACATGGCTCGCTGGCCCGACTACTTCCACGCCGCCGTCAGCCCCGGGGACCGCGTCATGGGATACATCATGGGTAAGGTTGAAGGACAAGGTGAATCTTGGCATGGACATGTTACAGCAGTGTCTGTTGCCACAGAATTTCGGAGGCAGAAGCTAGCCAAAAAACTTATGAACCTTTTGGAGGAAATCAGTGACAAGATGGATAAGGCCTACTTTGTGGATCTCTTCGTAAGAGCATCTAACATGCCAGCAATAAGGATGTATGAAAAGCTTGGCTATGTGGTTTATCGAAGGGTGCTCCGCTATTACTCAGGGGAAGAAGATGGCCTTGATATGAGGAAAGCTTTGTCACAAGACGTTGAAAAGAAGTCCATCATACCACTGAAGAGACCAATAACACCGGATGAACTTGAATATGATTGAAGTTAACTTCTAGTTACTTCCAGTGTTTTGTTTGCTGTTAACTTCTATGGTGATTTGCCAAGTGTCTTTTGTCTCCAGTAGTATCATCTAGTGATCGTGCTGTTTTCTTTTCTGCATCCTGATAAGATTCAACATAACTCTGAAGGTGATTCTATCGTTTTGGAATGGAATGCAGCACTTAG ]
[+] EMBL CF335597 [ TCCAGGCACCGGCTCTCCGCCGCTCGAAGCTTCTCTCTTCTCACCGGAATCTCGAGAGCACAGCGCCGCCCCGACGACGAGATCCCTCACCGGCGCCGCCGCCGCCGCGGCCAGGAGGCCGAGGGGCCATGACGACCATCCGCCGGTTCTGCTGCGACGACCTCCTCCGCTTCTCCTCCGTCAACCTCGACCACCTCACCGAGACCTTCAACATGTCCTTCTACATGACGTACATGGCTCGCTGGCCCGACTACTTCCACGCCGCCGTCAGCCCCGGGGACCGCGTCATGGGATACATCATGGGTAAGGTTGAAGGACAAGGTGAATCTTGGCATGGACATGTTACAGCAGTGTCTGTTGCCACAGAATTTCGGAGGCAGAAGCTAGCCAAAAAACTTATGAACCTTTTGGAGGAAATCAGTGACAAGATGGATAAGGCCTACTTTGTGGATCTCTTCGTAAGAGCATCTAACATGCCAGCAATAAGGATGTATGAAAAGCT ]
[+] EMBL CA765119 [ TTGAAGGACAAGGTGAATCTTGGCATGGACATGTTACAGCAGTGTCTGTTGCCACAGAATTTCGGAGGCAGAAGCTAGCCAAAAAACTTATGAACCTTTTGGAGGAAATCAGTGACAAGATGGATAAGGCCTACTTTGTGGATCTCTTCGTAAGAGCATCTAACATGCCAGCAATAAGGATGTATGAAAAGCTTGGCTATGTGGTTTATCGAAGGGTGCTCCGCTATTACTCAGGGGAAGAAGATGGCCTTGATATGAGGAAAGCTTTGTCACAAGACGTTGAAAAGAAGTCCATCATACCACTGAAGAGACCAATAACACCGGATGAACTTGAATATGATTGAAGTTAACTTCTAGTTACTTCCAGTGTTTTGTTTGCTGTTAACTTCTATGGTGATTTGCCAAGTGTCTTTTGTCTCCAGTAGTATCATCTAGTGATCGTGCTGTTTTCTTTTCTGCATCCTGATAAGATTCAACATAACTCTGAAGGTGATTCTATCGTTTTGGAATGGAATGCAGCACTTAGTAAGTAGTCTATCTTGGAATGAGGTGCTATCTTGTAACCGTACCGTTATTTTCTTGTATCGAGGAGTTCCACGTCTGTATC]
consensusID : consensus_11071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 605 fasta sequence
[TGGACTGAAGGAGTAGAAAGCTCGAAGCTTCTCTCTTCTCACCGGAATCTCGAGAGCACAGCGCCGCCCCGACGACGAGATCCCTCACCGGCGCCGCCGCCGCCGCGGCCAGGAGGCCGAGGGGCCATGACGACCATCCGCCGGTTCTGCTGCGACGACCTCCTCCGCTTCTCCTCCGTCAACCTCGACCACCTCACCGAGACCTTCAACATGTCCTTCTACATGACGTACATGGCTCGCTGGCCCGACTACTTCCACGCCGCCGTCAGCCCCGGGGACCGCGTCATGGGATACATCATGGGTAAGGTTGAAGGACAAGGTGAATCTTGGCATGGACATGTTACAGCAGTGTCTGTTGCCACAGAATTTCGGA-GGCAGAAGCTAGCCAAAAAACTTATGAACCTTTTGGAGGAAATCAGTGACAAGATGGATAAGGCCTACTTTGTGGATCTCTTCGTAAGAGCATCTAACATGCCAGCAATAAGGATGTATGAAAAGCTTGGCTATGTGGTTTATCGAAGGGTGCTCCGCTATTACTCAGGGGAAGAAGATGGCCTTGATATGAGGAAAGCTTTGTCACAAGACGTTGAAAAGAAGTCCATCAT]
[+] EMBL CF294222 [TGGACTGAAGGAGTAGAAAGCTCGAAGCTTCTCTCTTCTCACCGGAATCTCGAGAGCACAGCGCCGCCCCGACGACGAGATCCCTCACCGGCGCCGCCGCCGCCGCGGCCAGGAGGCCGAGGGGCCATGACGACCATCCGCCGGTTCTGCTGCGACGACCTCCTCCGCTTCTCCTCCGTCAACCTCGACCACCTCACCGAGACCTTCAACATGTCCTTCTACATGACGTACATGGCTCGCTGGCCCGACTACTTCCACGCCGCCGTCAGCCCCGGGGACCGCGTCATGGGATACATCATGGGTAAGGTTGAAGGACAAGGTGAATCTTGGCATGGACATGTTACAGCAGTGTCTGTTGCCACAGAATTTCGGA GGCAGAAGCTAGCCAAAAAACTTATGAACCTTTTGGAGGAAATCAGTGACAAGATGGATAAGGCCTACTTTGTGGATCTCTTCGTAAGAGCATCTAACATGCCAGCAATAAGGATGTATGAAAAGCTTGGCTATGTGGTTTATCGAAGGGTGCTCCGCTATTACTCAGGGGAAGAAGATGGCCTTGATATGAGGAAAGCTTTGTCACAAGACGTTGAAAAGAAGTCCATCAT]
[+] EMBL C73216 [ CGAGAGCACAGCGCCGCCCCGACGACGAGATCCCTCACCGGCGCCGCCGCCGCCGCGNNCAGGAGGCCGAGGGGCCATGACGACCATCCGCCGGTTCTGCTGCNACGACCTCCTCCGCTTCTCCTCCGTNAACCTCGACCACCTCACCGAGACCTTCAACATGTCCTTCTACATGACGTACATGGCTCGCTGGCCCGACTACTTCCACGCCGCCGTCAGCCCCGGGGACCGCGTCATGGGATACATCATGGGTAAGGTTGAAGGACAAGGTGAATCTTGGCATGGACATGTTACAGCAGTTTCTGTTGCCACAGAATTTCGGAGGGCAGAAGCTAGCCAAAAAACTTATGNACC ]
consensusID : consensus_11071#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 577 fasta sequence
[AGAGGACGAGACAAGGGGGGGTAAGGTTGAAGGACAAGGTGAATCTTGGCATGGACATGTTACAGCAGTGTCTGTTGCCACAGAATTTCGGAGGCAGAAGCTAGCCAAAAAACTTATGAACCTTTTGGAGGAAATCAGTGCCAAGATGGATAAGGCCTACTTTGTGGATCTCTTCGTAAGAGCATCTAACATGCCAGCAATAAGGATGTATGAAAAGCTTGGCTATGTGGTTTATCGAAGGGTGCTCCGCTATTACTCAGGGGAAGAAGATGGCCTTGATATGAGGAAAGCTTTGTCCCAAGACGTTGAAAAGAAGTCCATCATACCACTGAAGAGACCAATAACACCGGATGAACTTGAATATGATTGAAGTTAACTTCTAGTTACTTCCAGTGTTTTGTTTGCTGTTAACTTCTATGGTGATTTGCCAAGTGTCTTTTGTCTCCAGTAGTATCATCTAGTGATCGTGCTGTTTTCTTTTCTGCATCCTGATAAGATTCAACATAACTCTGAAGGTGATTCTATCGTTTTGGAATGGAATGCAGCACTTAGTAAGTAGTCTAAAAAAAAAAAAAAA]
[-] EMBL CA759476 [AGAGGACGAGACAAGGGGGGGTAAGGTTGAAGGACAAGGTGAATCTTGGCATGGACATGTTACAGCAGTGTCTGTTGCCACAGAATTTCGGAGGCAGAAGCTAGCCAAAAAACTTATGAACCTTTTGGAGGAAATCAGTGCCAAGATGGATAAGGCCTACTTTGTGGATCTCTTCGTAAGAGCATCTAACATGCCAGCAATAAGGATGTATGAAAAGCTTGGCTATGTGGTTTATCGAAGGGTGCTCCGCTATTACTCAGGGGAAGAAGATGGCCTTGATATGAGGAAAGCTTTGTCCCAAGACGTTGAAAAGAAGTCCATCATACCACTGAAGAGACCAATAACACCGGATGAACTTGAATATGATTGAAGTTAACTTCTAGTTACTTCCAGTGTTTTGTTTGCTGTTAACTTCTATGGTGATTTGCCAAGTGTCTTTTGTCTCCAGTAGTATCATCTAGTGATCGTGCTGTTTTCTTTTCTGCATCCTGATAAGATTCAACATAACTCTGAAGGTGATTCTATCGTTTTGGAATGGAATGCAGCACTTAGTAAGTAGTCTAAAAAAAAAAAAAAA]
[-] EMBL CA759477 [AGAGGACGAGACAAGGGGGGGTAAGGTTGAAGGACAAGGTGAATCTTGGCATGGACATGTTACAGCAGTGTCTGTTGCCACAGAATTTCGGAGGCAGAAGCTAGCCAAAAAACTTATGAACCTTTTGGAGGAAATCAGTGCCAAGATGGATAAGGCCTACTTTGTGGATCTCTTCGTAAGAGCATCTAACATGCCAGCAATAAGGATGTATGAAAAGCTTGGCTATGTGGTTTATCGAAGGGTGCTCCGCTATTACTCAGGGGAAGAAGATGGCCTTGATATGAGGAAAGCTTTGTCCCAAGACGTTGAAAAGAAGTCCATCATACCACTGAAGAGACCAATAACACCGGATGAACTTGAATATGATTGAAGTTAACTTCTAGTTACTTCCAGTGTTTTGTTTGCTGTTAACTTCTATGGTGATTTGCCAAGTGTCTTTTGTCTCCAGTAGTATCATCTAGTGATCGTGCTGTTTTCTTTTCTGCATCCTGATAAGATTCAACATAACTCTGAAGGTGATTCTATCGTTTTGGAATGGAATGCAGCACTTAGTAAGTAGTCTAAAAAAAAAAAAAAA]
[-] EMBL CF294223 [ CAGTGACAAGATGGATAAGGCCTACTTTGTGGATCTCTTCGTAAGAGCATCTAACATGCCAGCAATAAGGATGTATGAAAAGCTTGGCTATGTGGTTTATCGAAGGGTGCTCCGCTATTACTCAGGGGAAGAAGATGGCCTTGATATGAGGAAAGCTTTGTCACAAGACGTTGAAAAGAAGTCCATCATACCACTGAAGAGACCAATAACACCGGATGAACTTGAATAAAAAAAAAGTTAACTTCTAGTTACTTCCAGTGTTTTGTTTGCTGTTAAAATATATGGTGATTTGCCAAGTGTCTTTTGTCTCCAGTAGTATCATCTAGTGATCGTGCTGTTTTCTTTTCTGCATCCTGATAAGATTCAACATAACTCTGAAGGTGATTCTATCGTTTTGGAATGGAGGGCAGCACTTAGTAAGTAGTCTAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11071#0 CGGAGGAGCGCCTATCTGAAGTCCAACACCCGTCCAGGCACCGGCTCTCCGCCGCTCGAA 60
consensus_11071#1 ----------------------------------TGGACTGAAGGAGTAGAAAGCTCGAA 26
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 GCTTCTCTCTTCTCACCGGAATCTCGAGAGCACAGCGCCGCCCCGACGACGAGATCCCTC 120
consensus_11071#1 GCTTCTCTCTTCTCACCGGAATCTCGAGAGCACAGCGCCGCCCCGACGACGAGATCCCTC 86
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 ACCGGCGCCGCCGCCGCCGCGGCCAGGAGGCCGAGGGGCCATGACGACCATCCGCCGGTT 180
consensus_11071#1 ACCGGCGCCGCCGCCGCCGCGGCCAGGAGGCCGAGGGGCCATGACGACCATCCGCCGGTT 146
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 CTGCTGCGACGACCTCCTCCGCTTCTCCTCCGTCAACCTCGACCACCTCACCGAGACCTT 240
consensus_11071#1 CTGCTGCGACGACCTCCTCCGCTTCTCCTCCGTCAACCTCGACCACCTCACCGAGACCTT 206
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 CAACATGTCCTTCTACATGACGTACATGGCTCGCTGGCCCGACTACTTCCACGCCGCCGT 300
consensus_11071#1 CAACATGTCCTTCTACATGACGTACATGGCTCGCTGGCCCGACTACTTCCACGCCGCCGT 266
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 CAGCCCCGGGGACCGCGTCATGGGATACATCATGGGTAAGGTTGAAGGACAAGGTGAATC 360
consensus_11071#1 CAGCCCCGGGGACCGCGTCATGGGATACATCATGGGTAAGGTTGAAGGACAAGGTGAATC 326
consensus_11071#2 -------AGAGGACGAGACAAGGGG--------GGGTAAGGTTGAAGGACAAGGTGAATC 45
* * ** * ** *** ***************************
consensus_11071#0 TTGGCATGGACATGTTACAGCAGTGTCTGTTGCCACAGAATTTCGGAGGCAGAAGCTAGC 420
consensus_11071#1 TTGGCATGGACATGTTACAGCAGTGTCTGTTGCCACAGAATTTCGGAGGCAGAAGCTAGC 386
consensus_11071#2 TTGGCATGGACATGTTACAGCAGTGTCTGTTGCCACAGAATTTCGGAGGCAGAAGCTAGC 105
************************************************************
consensus_11071#0 CAAAAAACTTATGAACCTTTTGGAGGAAATCAGTGACAAGATGGATAAGGCCTACTTTGT 480
consensus_11071#1 CAAAAAACTTATGAACCTTTTGGAGGAAATCAGTGACAAGATGGATAAGGCCTACTTTGT 446
consensus_11071#2 CAAAAAACTTATGAACCTTTTGGAGGAAATCAGTGCCAAGATGGATAAGGCCTACTTTGT 165
*********************************** ************************
consensus_11071#0 GGATCTCTTCGTAAGAGCATCTAACATGCCAGCAATAAGGATGTATGAAAAGCTTGGCTA 540
consensus_11071#1 GGATCTCTTCGTAAGAGCATCTAACATGCCAGCAATAAGGATGTATGAAAAGCTTGGCTA 506
consensus_11071#2 GGATCTCTTCGTAAGAGCATCTAACATGCCAGCAATAAGGATGTATGAAAAGCTTGGCTA 225
************************************************************
consensus_11071#0 TGTGGTTTATCGAAGGGTGCTCCGCTATTACTCAGGGGAAGAAGATGGCCTTGATATGAG 600
consensus_11071#1 TGTGGTTTATCGAAGGGTGCTCCGCTATTACTCAGGGGAAGAAGATGGCCTTGATATGAG 566
consensus_11071#2 TGTGGTTTATCGAAGGGTGCTCCGCTATTACTCAGGGGAAGAAGATGGCCTTGATATGAG 285
************************************************************
consensus_11071#0 GAAAGCTTTGTCACAAGACGTTGAAAAGAAGTCCATCATACCACTGAAGAGACCAATAAC 660
consensus_11071#1 GAAAGCTTTGTCACAAGACGTTGAAAAGAAGTCCATCAT--------------------- 605
consensus_11071#2 GAAAGCTTTGTCCCAAGACGTTGAAAAGAAGTCCATCATACCACTGAAGAGACCAATAAC 345
************ **************************
consensus_11071#0 ACCGGATGAACTTGAATATGATTGAAGTTAACTTCTAGTTACTTCCAGTGTTTTGTTTGC 720
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ACCGGATGAACTTGAATATGATTGAAGTTAACTTCTAGTTACTTCCAGTGTTTTGTTTGC 405
consensus_11071#0 TGTTAACTTCTATGGTGATTTGCCAAGTGTCTTTTGTCTCCAGTAGTATCATCTAGTGAT 780
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 TGTTAACTTCTATGGTGATTTGCCAAGTGTCTTTTGTCTCCAGTAGTATCATCTAGTGAT 465
consensus_11071#0 CGTGCTGTTTTCTTTTCTGCATCCTGATAAGATTCAACATAACTCTGAAGGTGATTCTAT 840
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 CGTGCTGTTTTCTTTTCTGCATCCTGATAAGATTCAACATAACTCTGAAGGTGATTCTAT 525
consensus_11071#0 CGTTTTGGAATGGAATGCAGCACTTAGTAAGTAGTCTATCTTGGAATGAGGTGCTATCTT 900
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 CGTTTTGGAATGGAATGCAGCACTTAGTAAGTAGTCTAAAAAAAAAAAAAAA-------- 577
consensus_11071#0 GTAACCGTACCGTTATTTTCTTGTATCGAGGAGTTCCACGTCTGTATC 948
consensus_11071#1 ------------------------------------------------
consensus_11071#2 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||