These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1707 fasta sequence [ACACTCCAGCCTATCGAGCGGTCACTACTCACTAGCAGTTGGAATTTGGACAGCAGCAGCAGCGGTGAGCGCGGCGGCGGCGGCGGCGGCGACTTGCTCTCCTCCTCCCCACAGTCCAGTTCTTACAGGAGACGAACGCCGGCGAGCCGCCTCCGCCGCAGCTATGGCTTCCAGGACGCTCTCCGTCTCCTCCCTCGCCTCCGCCTTCGCCTCCATCCCCCGCCCCAGGCCCCCTCCTCCGCCTCCATCTCGCATCCGCGCCTCCCCTCTCTCCACCGCCGCCGCCGCCGCCAGTGACGGCGACGCCGCCGACGGGGTCGACACCGTGGAGCAGCTCCTCGTTACGAAGCCCCCCGCCTCCTCCTCCTCCTCCTCCGCGGGAAGGGGCCGGATCGACCGGCTCATGAAGCTGCAGCGTCGCGCGGACGGGGACTTCCCCCCCGGCGGGGCGGGGCGGAGGTGGTTCCCTTACCTGGACGCGTTCCGGGCGGCGGGGGGCGTGGAGCTGACTAGCCGGGAGGTGCTGGAGGTGCTGGAGCCGCACATCATGGAGGCGCGGCGGGAGCGGATCCGCCGCGCCGTCGAGAACCGGAGCTACTCCGTTTGCCTCGTCGTGGAGGGGCTCTCTGACTTCGGGAACGTCTCCGCGGCGTTCCGGTCCGCCGACGCGCTAGGCGTGCAGTCCGTGCACGTCATCTCCTGCGACAACAACAAAAGGTATAGAGACAATAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGATATCGAATTATGGAGCTCAACTGCAGAATGCTTTGATGCTTTAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCGGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCAATGAACTTATGGGCATAAGTGATGATGCTTTAAAGTTGTCAGACTTGCACTGCAGTGTTCCTATGAAAGGCATGGTGGATTCTTTTAATGTATCTGTTGCAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACAACTATCATTATAGTTACTGAAGGAGAAATATACACAACCTAG-GTATTCATTCAAAGAGATTTGCTTTGGCAATTGGAGTTTCTGGCTCTGGCATATCATTTTTGACAGAGCAGCTGGCTTTTTACGGAGAGGAACTATCAGGCTGCTTGACCATCATGGTGCCTCAAGATGATGACTTCAGAACAGAATTTTTTGACAGGACTATGATCTATCAGAGTATCAAGCTATCGCATTATCTTAACAGATGACATTACTATTTCAGTCACATTGCTTGCTACCCAAATTTGGAAGTTGATGCAAAAACTAAGATGTTGTTTTGGATGCTGACATATAAGAAAGGATCGATGCAGCTTTCTCTCCGTTCGCTAGAACCCCAGTTGATAATTTTTAGAGTTTAACTACTGCCTTTTACCGCGATGTGAGACACTGCACTCAGAACTCAACTCTCTTAGCGATTTAATGTCATGTTTTCTCTCTCGGATTGTTCACAATAACAGAGCTAGAGGGTTA] [+] EMBL AK068136 [ACACTCCAGCCTATCGAGCGGTCACTACTCACTAGCAGTTGGAATTTGGACAGCAGCAGCAGCGGTGAGCGCGGCGGCGGCGGCGGCGGCGACTTGCTCTCCTCCTCCCCACAGTCCAGTTCTTACAGGAGACGAACGCCGGCGAGCCGCCTCCGCCGCAGCTATGGCTTCCAGGACGCTCTCCGTCTCCTCCCTCGCCTCCGCCTTCGCCTCCATCCCCCGCCCCAGGCCCCCTCCTCCGCCTCCATCTCGCATCCGCGCCTCCCCTCTCTCCACCGCCGCCGCCGCCGCCAGTGACGGCGACGCCGCCGACGGGGTCGACACCGTGGAGCAGCTCCTCGTTACGAAGCCCCCCGCCTCCTCCTCCTCCTCCTCCGCGGGAAGGGGCCGGATCGACCGGCTCATGAAGCTGCAGCGTCGCGCGGACGGGGACTTCCCCCCCGGCGGGGCGGGGCGGAGGTGGTTCCCTTACCTGGACGCGTTCCGGGCGGCGGGGGGCGTGGAGCTGACTAGCCGGGAGGTGCTGGAGGTGCTGGAGCCGCACATCATGGAGGCGCGGCGGGAGCGGATCCGCCGCGCCGTCGAGAACCGGAGCTACTCCGTTTGCCTCGTCGTGGAGGGGCTCTCTGACTTCGGGAACGTCTCCGCGGCGTTCCGGTCCGCCGACGCGCTAGGCGTGCAGTCCGTGCACGTCATCTCCTGCGACAACAACAAAAGGTATAGAGACAATAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGATATCGAATTATGGAGCTCAACTGCAGAATGCTTTGATGCTTTAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCGGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCAATGAACTTATGGGCATAAGTGATGATGCTTTAAAGTTGTCAGACTTGCACTGCAGTGTTCCTATGAAAGGCATGGTGGATTCTTTTAATGTATCTGTTGCAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACAACTATCATTATAGTTACTGAAGGAGAAATATACACAACCTAG GTATTCATTCAAAGAGATTTGCTTTGGCAATTGGAGTTTCTGGCTCTGGCATATCATTTTTGACAGAGCAGCTGGCTTTTTACGGAGAGGAACTATCAGGCTGCTTGACCATCATGGTGCCTCAAGATGATGACTTCAGAACAGAATTTTTTGACAGGACTATGATCTATCAGAGTATCAAGCTATCGCATTATCTTAACAGATGACATTACTATTTCAGTCACATTGCTTGCTACCCAAATTTGGAAGTTGATGCAAAAACTAAGATGTTGTTTTGGATGCTGACATATAAGAAAGGATCGATGCAGCTTTCTCTCCGTTCGCTAGAACCCCAGTTGATAATTTTTAGAGTTTAACTACTGCCTTTTACCGCGATGTGAGACACTGCACTCAGAACTCAACTCTCTTAGCGATTTAATGTCATGTTTTCTCTCTCGGATTGTTCACAATAACAGAGCTAGAGGGTTA] [+] EMBL CB657703 [ GCGGACGGGGACTTCCCCCCCGGCGGGGCGGGGCGGAGGTGGTTCCCTTACCTGGACGCGTTCCGGGCGGCGGGGGGCGTGGAGCTGACTAGCCGGGAGGTGCTGGAGGTGCTGGAGCCGCACATCATGGAGGCGCGGCGGGAGCGGATCCGCCGCGCCGTCGAGAACCGGAGCTACTCCGTTTGCCTCGTCGTGGAGGGGCTCTCTGACTTCGGGAACGTCTCCGCGGCGTTCCGGTCCGCCGACGCGCTAGGCGTGCAGTCCGTGCACGTCATCTCCTGCGACAACAACAAAAGGTATAGAGACAATAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGATATCGAATTATGGAGCTCAACTGCAGAATGCTTTGATGCTTTAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCGGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCAATGAACTTATGGGCATAAGTGATGATGCTTTAAAGTTGTCAGACTTGCACTGCAGTGTTCCTATGAAAGGCATGGTGGATTCTTTTAATGTATCTGTTGCAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACca ] [+] EMBL CF303081 [ CGGAGCTACTCCGTTTGCCTCGTCGTGGAGGGGCTCTCTGACTTCGGGAACGTCTCCGCGGCGTTCCGGTCCGCCGACGCGCTAGGCGTGCAGTCCGTGCACGTCATCTCCTGCGACAACAACAAAAGGTATAGAGACAATAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGATATCGAATTATGGAGCTCAACTGCAGAATGCTTTGATGCTTTAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCGGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCAATGAACTTATGGGCATAAGTGATGATGCTTTAAAGTTGTCAGACTTGCACTGCAGTGTTCCTATGAAAGGCATGGTGGATTCTTTTAATGTATCTGTTGCAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCGGTCATCATGGTGATC ] [+] EMBL CF335161 [ CTTTAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCGGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCAATGAACTTATGGGCATAAGTGATGATGCTTTAAAGTTGTCAGACTTGCACTGCAGTGTTCCTATGAAAGGCATGGTGGATTCTTTTAATGTATCTGTTGCAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACAACTATCATTATAGTTACTGAAGGAGAAATA ] [-] EMBL CB657704 [ CTTATTTGGGAAATGATTCGGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCAATGAACTTATGGGCATAAGTGATGATGCTTTAAAGTTGTCAGACTTGCACTGCAGTGTTCCTATGAAAGGCATGGTGGATTCTTTTAATGTATCTGTTGCAGCTGGAATCCTTATGCACCATGCTGTCTGTGATGGAATTTCCCGCATCGGTCATCATGGTGATTTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACAACTATCATTATAGTTACTGAAGGAGAAATATACCCACCCTAG GTATTCATTCAAAGAGATTTGCTTTGGCAATTGGAGTTTCTGGTTTTGGCATATCATTTTTGACAGAGCAGCTGGCTTTTTACGGAGAGGAACTATCAGGCTGCTTGACCATCATGGTGCCTCAAGATGATGACTTCAGAACAGAATTTTTTGCCAGGACTATGATTTATCAGAGTATCAAGCTATCGCATTATCTTAACAGATGACATTACTATTTCAGTCACATTGCTTGCTACCCAAATTTGGAAGTTGATGCAAAAACTAAGATGTTGTTTTGGATGCTGACATATAAGAAAGGATGGATGCAG ] [+] EMBL OSC29831 [ TTAATGTATCTGTTGCAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACAACTATCATTATAGTTACTGAAGGAGAAATATACACAACCTAG GTATTCATTCAAAGAGATTTGCTTTGGCAATTGGAGTTTCTGGCTCTGGCATATCATTTTTGACAGAGCAGCTGGCTTTTTACGGAGAGGAACTATCAGGCTGCTTGACCATCATGGTGCCTCAAGATGATGACTTCAGAACAGAA ] [-] EMBL CF335162 [ CGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACAACTATCATTATAGTTACTGAAGGAGAAATATACACAACCTAGTGTATTCATTCAAAGAGATTTGCTTTGGCAATTGGAGTTTCTGGCTCTGGCATATCATTTTTGACAGAGCAGCTGGCTTTTTACGGAGAGGAACTATCAGGCTGCTTGACCATCATGGTGCCTCAAGATGATGACTTCAGAACAGAATTTTTTGACAGGACTATGATCTATCAGAGTATCAAGCTATCGCATTATCTTAACAGATGACATTACTATTTCAGTCACATTGCTTGCTACCCAAATTTGGAAGTTGATGCAAAAACTAAGGTGTTGTTTTGGATGCTGACATATAAGAAAGGATCGATGCAGCTTTCTCTCaaaaaaaa ] consensusID : consensus_11073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 203 fasta sequence [TGTGTTTGAACGAGGACGTAGTGAGTCGTAGTCAGAGGTAGTCAAGCGTATGTCGCAGTTAGTCGTGTACAGAGTGACATTACGTAGTGTGTCAGGTCACATTGCTTGCTACCCAAATTTGGAAGTTGATGCAAAAACTAAGATGTTGTTTTGGATGCTGACATATAAGAAAGGATCGATGCAGCTTTCTCTCAAAAAAAAAA] [+] EMBL BQ907874 [TGTGTTTGAACGAGGACGTAGTGAGTCGTAGTCAGAGGTAGTCAAGCGTATGTCGCAGTTAGTCGTGTACAGAGTGACATTACGTAGTGTGTCAGGTCACATTGCTTGCTACCCAAATTTGGAAGTTGATGCAAAAACTAAGATGTTGTTTTGGATGCTGACATATAAGAAAGGATCGATGCAGCTTTCTCTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11073#0 ACACTCCAGCCTATCGAGCGGTCACTACTCACTAGCAGTTGGAATTTGGACAGCAGCAGC 60 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 AGCGGTGAGCGCGGCGGCGGCGGCGGCGGCGACTTGCTCTCCTCCTCCCCACAGTCCAGT 120 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 TCTTACAGGAGACGAACGCCGGCGAGCCGCCTCCGCCGCAGCTATGGCTTCCAGGACGCT 180 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 CTCCGTCTCCTCCCTCGCCTCCGCCTTCGCCTCCATCCCCCGCCCCAGGCCCCCTCCTCC 240 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 GCCTCCATCTCGCATCCGCGCCTCCCCTCTCTCCACCGCCGCCGCCGCCGCCAGTGACGG 300 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 CGACGCCGCCGACGGGGTCGACACCGTGGAGCAGCTCCTCGTTACGAAGCCCCCCGCCTC 360 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 CTCCTCCTCCTCCTCCGCGGGAAGGGGCCGGATCGACCGGCTCATGAAGCTGCAGCGTCG 420 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 CGCGGACGGGGACTTCCCCCCCGGCGGGGCGGGGCGGAGGTGGTTCCCTTACCTGGACGC 480 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 GTTCCGGGCGGCGGGGGGCGTGGAGCTGACTAGCCGGGAGGTGCTGGAGGTGCTGGAGCC 540 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 GCACATCATGGAGGCGCGGCGGGAGCGGATCCGCCGCGCCGTCGAGAACCGGAGCTACTC 600 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 CGTTTGCCTCGTCGTGGAGGGGCTCTCTGACTTCGGGAACGTCTCCGCGGCGTTCCGGTC 660 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 CGCCGACGCGCTAGGCGTGCAGTCCGTGCACGTCATCTCCTGCGACAACAACAAAAGGTA 720 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 TAGAGACAATAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGATATCGAATTATGGAG 780 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 CTCAACTGCAGAATGCTTTGATGCTTTAAAAAAGCGTGGTTATCGCATTGCAACTACTTA 840 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 TTTGGGAAATGATTCGGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGT 900 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 TGTGGGCAATGAACTTATGGGCATAAGTGATGATGCTTTAAAGTTGTCAGACTTGCACTG 960 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 CAGTGTTCCTATGAAAGGCATGGTGGATTCTTTTAATGTATCTGTTGCAGCTGGAATCCT 1020 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 TATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCGGTCATCATGGTGATCTCTTGCC 1080 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 TGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGG 1140 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 CATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACAACT 1200 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 ATCATTATAGTTACTGAAGGAGAAATATACACAACCTAGGTATTCATTCAAAGAGATTTG 1260 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 CTTTGGCAATTGGAGTTTCTGGCTCTGGCATATCATTTTTGACAGAGCAGCTGGCTTTTT 1320 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 ACGGAGAGGAACTATCAGGCTGCTTGACCATCATGGTGCCTCAAGATGATGACTTCAGAA 1380 consensus_11073#1 -------------------------------------------------TGTGTTTGAAC 11 ** ** * consensus_11073#0 CAGAATTTTTTGA-CAGGACTATGATCTATCAGAGTATCAAGCTATCGCATTATCTTAAC 1439 consensus_11073#1 GAGGACGTAGTGAGTCGTAGTCAGAGGTAGTCAAGCGT-ATGTCGCAGTTAGTCGTGTAC 70 ** * * *** * * * ** ** ** * * * * * ** consensus_11073#0 AGA-TGACATTAC----TATTTCAG-TCACATTGCTTGCTACCCAAATTTGGAAGTTGAT 1493 consensus_11073#1 AGAGTGACATTACGTAGTGTGTCAGGTCACATTGCTTGCTACCCAAATTTGGAAGTTGAT 130 *** ********* * * **** ********************************** consensus_11073#0 GCAAAAACTAAGATGTTGTTTTGGATGCTGACATATAAGAAAGGATCGATGCAGCTTTCT 1553 consensus_11073#1 GCAAAAACTAAGATGTTGTTTTGGATGCTGACATATAAGAAAGGATCGATGCAGCTTTCT 190 ************************************************************ consensus_11073#0 CTCCGTTCGCTAGAACCCCAGTTGATAATTTTTAGAGTTTAACTACTGCCTTTTACCGCG 1613 consensus_11073#1 CTCAAAAAAAAAA----------------------------------------------- 203 *** * consensus_11073#0 ATGTGAGACACTGCACTCAGAACTCAACTCTCTTAGCGATTTAATGTCATGTTTTCTCTC 1673 consensus_11073#1 ------------------------------------------------------------ consensus_11073#0 TCGGATTGTTCACAATAACAGAGCTAGAGGGTTA 1707 consensus_11073#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||