|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11078#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1136 fasta sequence
[TTTTTTTGCAGCATTGCAGCCCCTAATTAATCCCATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCACCTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATTTTTTTTCTCTCATTTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGTATGGTCACCGGCGGCGGAGGAGGAGGAGGACGACGACGACGACCTGCCGCCGTTCGGCGAGCCGTCCATGCTCCCGATCTTGCCGCTGTCCGCCTTGGACGTGCCGTTCTCGGCGAAGCCGAAGCCGGAGCTGAAGTCGGCGAAGCCGAAGAACTCGTTGAGCGGCCAGTCCGGCGATCCGCCGGCGAGGTTGCCGAACACCGCCGCGGCGGTGCCGGCCGTGACGGGGCCACGGGAGGCCCGCTTCGGCGGGGTCTTGGTCACCACCGGCGGCAGCGCAGGGGTGTTGAACTGCTCGTCGACGAGCGACCAGTCGGGCAGGTTGCCGGTGATGCCGATGTCGTGGCCACCGGTGGCCCAGTCGATGACGTCGTCATCGCTGTAGATCGGCGAGGGGCTGCGCTTCGGCGGCGGCTGCGGGGGCGGTGCCGTGTTGCGCGGCAGCGACGACGACAAGGGGTGTGGGGGGTGTTTGTCGTCGTCGTCGGCGGCGGCGTCAAGGCCGACGTGGACGCCGGTGAGGAGGAAGCGGCGGTGGGCGGAGACGAGGGCGTTGGCGGTGTGGACGGCGACGTCGCAGGCGCGGCAGAGGAGGGCGCGGTCCTCGACGCAGAAGAAGTAGGCGTGGGCGTCCTGGCAGATGTCGCAGGTCGGGGGGGAGGGAGAGGAGGAAGTAGAGGAGGAGGAGAGGAGGGGGAGGCGGTGGTGCTTGCCGGCGAGGCGGTTGGCGGCGTGGACGTGGAGGTCGCAGCGCGCGCAGAGGGCGGCGTCGTCGGCGCAGCAGAGCACCCGCGCCTCCGCCGCCTCGCACGCGGAGCACAGCACCTTCATCGATCTAGCTACCTACCTACCACCACGACTCATCCACGAGGCGCTGGGG]
[+] EMBL CB659560 [TTTTTTTGCAGCATTGCAGCCCCTAATTAATCCCATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCACCTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATTTTTTTTCTCTCATTTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGTATGGTCACCGGCGGCGGAGGAGGAGGAGGACGACGACGACGACCTGCCGCCGTTCGGCGAGCCGTCCATGCTCCCGATCTTGCCGCTGTCCGCCTTGGACGTGCCGTTCTCGGCGAAGCCGAAGCCGGAGCTGAAGTCGGCGAAGCCGAAGAACTCGTTGAGCGGCCAGTCCGGCGATCCGCCGGCGAGGTTGCCGAACACCGCCGCGGCGGTGCCGGCCGTGACGGGGCCACGGGAGGCCCGCTTCGGCGGGGTCTTGGTCACCACCGGCGGCAGCGCAGGGGTGTTGAACTGCTCGTCGACGAGCGACCAGTCGGGCAGGTTGCCGGTGATGCCGATGTCGTGGCCACCGGTGGCCCAGTCGATGACGTCGTCATCGCTGTAGATCGGCGAGGGGCTGCGCTTCNGCGGCGGCTGCGGGGGCGGTGCCGT ]
[-] EMBL CB660660 [ ACGACGACCTGCCGCCGTTCGGCGAGCCGTCCATGCTCCCGATCTTGCCGCTGTCCGCCTTGGACGTGCCGTTCTCGGCGAAGCCGAAGCCGGAGCTGAAGTCGGCGAAGCCGAAGAACTCGTTGAGCGGCCAGTCCGGCGATCCGCCGGCGAGGTTGCCGAACACCGCCGCGGCGGTGCCGGCCGTGACGGGGCCACGGGAGGCCCGCTTCGGCGGGGTCTTGGTCACCACCGGCGGCAGCGCAGGGGTGTTGAACTGCTCGTCGACGAGCGACCAGTCGGGCAGGTTGCCGGTGATGCCGATGTCGTGGCCACCGGTGGCCCAGTCGATGACGTCGTCATCGCTGTAGATCGGCGAGGGGCTGCGCTTCGGCGGCGGCTGCGGGGGCGGTGCCGTGTTGCGCGGCAGCGACGACGACAAGGGGTGTGGGGGGTGTTTGTCGTCGTCGTCGGCGGCGGCGTCAAGGCCGACGTGGACGCCGGTGAGGAGGAAGCGGCGGTGGGCGGAGACGAGGGCGTTGGCGGTGTGGA ]
[-] EMBL CB659559 [ GGCGGTGCCGGCCGTGACGGGGCCACGGGAGGCCCGCTTCGGCGGGGTCTTGGTCACCACCGGCGGCAGCGCAGGGGTGTTGAACTGCTCGTCGACGAGCGACCAGTCGGGCAGGTTGCCGGTGATGCCGATGTCGTGGCCACCGGTGGCCCAGTCGATGACGTCGTCATCGCTGTAGATCGGCGAGGGGCTGCGCTTCGGCGGCGGCTGCGGGGGCGGTGCCGTGTTGCGCGGCAGCGACGACGACAAGGGGTGTGGGGGGTGTTTGTCGTCGTCGTCGGCGGCGGCGTCAAGGCCGACGTGGACGCCGGTGAGGAGGAAGCGGCGGTGGGCGGAGACGAGGGCGTTGGCGGTGTGGACGGCGACGTCGCAGGCGCGGCAGAGGAGGGCGCGGTCCTCGACGCAGAAGAAGTAGGCGTGGGCGTCCTGGCAGATGTCGCAGGTCGGGGGGGAGGGAGAGGAGGAAGTAGAGGAGGAGGAGAGGAGGGGGAGGCGGTGGTGCTTGCCGGCGAGGCGGTTGGCGGCGTGGACGTGGAGGTCGCAGCGCGCGCAGAGGGCGGCGTCGTCGGCGCAGCAGAGCACCCGCGCCTCCGCCGCCTCGCACGCGGAGCACAGCACCTTCATCGATCTAGCTACCTACCTACCACCACGACTCATCCACGAGGCGCTGGGG]
consensusID : consensus_11078#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 725 fasta sequence
[TTTTTGAAACAAATTGACTTGCAATTTTCTCCACTTTATTTCGTTTTCTTTTCACTGTCCTTAATTTCTATTCCCTCCGTCTCTAAATAT-AGGAATTTTAATTAGACAGCCAAAATCACTTA---TATTTAGGGACGGAGGAGAGTAGTAACTAACACAAAACGTTACACAAATGCAGCATTGCAGCCCCTAATTAATCAGATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCACCTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATTTTTTTTCTCTCA-TTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGTATGGTCACCGGCGCCGGCGGCGGCGAAGCAACGGAAGGGGTTCTCCGGCGAGGAGATGTCCGGCACGAACACCGCGCTGGCGTCGGTGGCGCCGCCACCGTAGCGCGGGTCCCGTTGCCAGTGGAGCCCTGACGCCGTGGGC-GGCGAGGGGAGCTCCGGCACGGCCCAGTGAACTTCCGGCACCTGGCCGAAGAAGTCCTGGCC-GC-CGCCGCGCGCGCGCGGGGGGCGGCGGAGGAGGACGACGACGACGACGACACTGCGCGTTCGGCGAGCCGGTCCATGGTCCCGAATCTGGCGGTGTCCGGC]
[-] EMBL BM418675 [TTTTTGAAACAAATTGACTTGCAATTTTCTCCACTTTATTTCGTTTTCTTTTCACTGTCCTTAATTTCTATTCCCTCCGTCTCTAAATATAAGGAATTTTAATTAGACAATCAAAATCACTTATATTATTTAGGGACGTAGGAGAGTAGTAACTAACACAAAACGTTACACAAATGCAACATTGCAGCCCCTAATTAATCAGATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCACCTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATTTTTTTTCTCTCA TTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGTATGGTCACCGGCGCCGGCGGCGGCGAAGCAACGGAAGGGGTTCTCCGGCGAGGAGATGTCCGGCACGAACACCGCGCTGGCGTCGGTGGCGCCGCCACGGTAG ]
[+] EMBL CB660661 [ ctttTAAATAT AGGGATTTTAATTAGACAGCCAAAATCACTTA TATTTAGGGACGGAGGAGAGTAGTAACTCACACAAAACGTTACACAAATGCAGCATTGCAGCCCCTAATTAATCAGATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCACCTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATTTTTTTTCTCTCATTTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGTATGGTCACCGGCGGCGGCGGCGGCGAAGCAACGGAAGGGGTTCTCCGGCGAGGAGATGTCCGGCACGAACACCGCGCTGGCGTCGGTGGCGCCGCCACCGTAGCGCGGGTCCCGTTGCCAGTGGAGCCCTGACGCCGTGGGC GGCGAGGGGAGCTCCGGCACGGCCCAGTGAACTTCCGGCACCTGGCCGAAGAAGTCCTGGCC GC CGCCGC ]
[+] EMBL CB654763 [ GACAGCCAAAATCACTTA TATTTAGGGACGGACCATAGTAGTAACTAACACAAAACGTTACACAAATGCAGCATTGCAGCCCCTAATTAATCAGATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCACCTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATTTTTTTTCTCTCATTTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGTATGGTCACCGGCGGCGGCGGCGGCGAAGCAACGGAAGGGGTTCTCCGGCGAGGAGATGTCCGGCACGAACACCGCGCTGGCGTCGGTGGCGCCGCCACCGTAGCGCGGGTCCCGTTGCCAGTGGAGCCCTGACGCCGTGGGC GGCGAGGGGAGCTCCGGCACGGCCCAGTGAACTTCCGGCACCTGGCCGAAGAAGTCCTGGCC GC CGCCGC ]
[-] EMBL BI811305 [ ttTTGCAGCCCCTAATTAATCAGATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCACCTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATTTTTTTTCTCTCA TTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGTATGGTCACCGGCGCCGGCGGCGGCGAAGCAACGGAAGGGGTTCTCCGGCGAGGAGATGTCCGGCACGAACACCG GCTGGCGTCGGTGGCGCCGCCACCGTAGCGCGGGTCCCGTTGCCAGTGGAGCCCTGACGCCGTGGGCTGGCGAGGGGAGCTCCGGCACGG CCAGTGAACTTCCGGCACCTGGCCGAAGAAGTCCTGGCCGGCGCGCCGCGCGCGCGCGGGGGGCGGCGGAGGAGGACGACGACGACGACGACACTGCGCGTTCGGCGAGCCGGTCCATGGTCCCGAATCTGGCGGTGTCCGGC]
[-] EMBL BE229816 [ CGATCACCTAGTAGCAGGCTAACTAGCCAAGTACATCAATTTANTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTACTACATGTACCAANTCGAACATTTTCTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11078#0 ------------------------------------------------------------
consensus_11078#1 TTTTTGAAACAAATTGACTTGCAATTTTCTCCACTTTATTTCGTTTTCTTTTCACTGTCC 60
consensus_11078#0 ------------------------------------------------------------
consensus_11078#1 TTAATTTCTATTCCCTCCGTCTCTAAATATAGGAATTTTAATTAGACAGCCAAAATCACT 120
consensus_11078#0 --------------------------------------------TTTTTTTGCAGCATTG 16
consensus_11078#1 TATATTTAGGGACGGAGGAGAGTAGTAACTAACACAAAACGTTACACAAATGCAGCATTG 180
**********
consensus_11078#0 CAGCCCCTAATTAATCCCATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCAC 76
consensus_11078#1 CAGCCCCTAATTAATCAGATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCAC 240
**************** ******************************************
consensus_11078#0 CTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAA 136
consensus_11078#1 CTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAA 300
************************************************************
consensus_11078#0 TCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATT 196
consensus_11078#1 TCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATT 360
************************************************************
consensus_11078#0 TTTTTTCTCTCATTTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGT 256
consensus_11078#1 TTTTTTCTCTCATTT-GTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGT 419
*************** ********************************************
consensus_11078#0 ATGGTCACCGGCGGCGGAGGAGGAGGAGGACGACGACGACGACCTGCCGCCGTTCGGCGA 316
consensus_11078#1 ATGGTCACCGGCGCCGGCGGCGGCGAAG--CAACGGAAGGGGTTCTCCGG----CGAGGA 473
************* *** ** ** * ** * *** * *** ** **
consensus_11078#0 GCCGTCCATGCTCCCGATCTTGCCGCTGTCCGCCTTGGACGTGCCGTTCTCG--GCGAAG 374
consensus_11078#1 GATGTCCGG---CACGAACACCGCGCTG---GCGTCGGTGGCGCCGCCACCGTAGCGCGG 527
* **** * *** * ***** ** * ** * **** ** *** *
consensus_11078#0 CCGAAGCCGGAGCTGAAGTCGGCGAAGCCGAAGAACTCGTTGAGCGGCCAGTCCGGCGAT 434
consensus_11078#1 GTCCCGTTGCCAGTGGAGCCC-TGACGCCGTGGG---CGGCGAGGGG--AGCTCCGGCAC 581
* * ** ** * ** **** * ** *** ** ** * * *
consensus_11078#0 CCGCCGGCGAGGTTGCCGAACACCGCCGCGGCGGTGCCGGCCGTGACGGGGCCACGGGAG 494
consensus_11078#1 GGCCCAGTGAACTTCCGGCACCTGGCCGAAGAAGTCCTGGCCGCCGCCGCGC-GCGCGCG 640
** * ** ** * * ** **** * ** * ***** * * ** ** * *
consensus_11078#0 GCCCGCTTCGGCGGGGTCTTGGTCACCACCGGCGGCAGCGCAGGGGTGTTGAACTGCTCG 554
consensus_11078#1 GGGGGCGGCGGAGGA-----GGACGACGACGACGACGACACTGCGCGTTCGGCGAGCCGG 695
* ** *** ** ** * * ** ** * * * * * * * ** *
consensus_11078#0 TCGACGAGCGACCAGTCGGGCAGGTTGCCGGTGATGCCGATGTCGTGGCCACCGGTGGCC 614
consensus_11078#1 TCCATGGTCC-CGAATCTGGC-GGTGTCCGGC---------------------------- 725
** * * * * * ** *** *** ****
consensus_11078#0 CAGTCGATGACGTCGTCATCGCTGTAGATCGGCGAGGGGCTGCGCTTCGGCGGCGGCTGC 674
consensus_11078#1 ------------------------------------------------------------
consensus_11078#0 GGGGGCGGTGCCGTGTTGCGCGGCAGCGACGACGACAAGGGGTGTGGGGGGTGTTTGTCG 734
consensus_11078#1 ------------------------------------------------------------
consensus_11078#0 TCGTCGTCGGCGGCGGCGTCAAGGCCGACGTGGACGCCGGTGAGGAGGAAGCGGCGGTGG 794
consensus_11078#1 ------------------------------------------------------------
consensus_11078#0 GCGGAGACGAGGGCGTTGGCGGTGTGGACGGCGACGTCGCAGGCGCGGCAGAGGAGGGCG 854
consensus_11078#1 ------------------------------------------------------------
consensus_11078#0 CGGTCCTCGACGCAGAAGAAGTAGGCGTGGGCGTCCTGGCAGATGTCGCAGGTCGGGGGG 914
consensus_11078#1 ------------------------------------------------------------
consensus_11078#0 GAGGGAGAGGAGGAAGTAGAGGAGGAGGAGAGGAGGGGGAGGCGGTGGTGCTTGCCGGCG 974
consensus_11078#1 ------------------------------------------------------------
consensus_11078#0 AGGCGGTTGGCGGCGTGGACGTGGAGGTCGCAGCGCGCGCAGAGGGCGGCGTCGTCGGCG 1034
consensus_11078#1 ------------------------------------------------------------
consensus_11078#0 CAGCAGAGCACCCGCGCCTCCGCCGCCTCGCACGCGGAGCACAGCACCTTCATCGATCTA 1094
consensus_11078#1 ------------------------------------------------------------
consensus_11078#0 GCTACCTACCTACCACCACGACTCATCCACGAGGCGCTGGGG 1136
consensus_11078#1 ------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||