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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11081#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 778 fasta sequence
[GAGATCGAAGCGAAAAAAAACAGAGCAAAATCGTCCCAGCGCGAGCGAATCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACCGACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGG-CGGCGC-TTCTCGGA-CCCGTCGGTGCATGCGGACATG-AAGATGTGGCCTGTCAAGGTGGTGCCTGGCCCATGCGATCAGCCGTGATCGTGGTGACGTACTAGGGCGATGAGAAGAGATTCTCGGTGGAGGAATCTGGTCATGGTGCTACATGATGAAGAGATCGCGAGGCCTTCTCACACACCATCATGACGCCGCATAACGTACCGGCTACTTATCATTGCACGCAGTCATCAAGACCCGGGTATCTCGGCTTACGTTGCTCTTATTACGGCCTAGTGGCTTATGGCTCGGCTGACAAAGGGCTCTCTCGGAAAGAATGCCTATTTACCTGTTGGGATTTAGTGTAATCTGACTTTGAGGGCCTCAAGTAGTGTTGCGAGTACCCGTGTGGATGGTGTTACGAGGGGACATTGGCGGT]
[+] EMBL AW155003 [GAGATCGAAGCGAAAAAAAACAGAGCAAAATCGTCCCAGCGCGAGCGAATCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACCGACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGG CGGCGC TTCTCGGA CCCGTCGGTGCATGCGGACATG AAGATGTGGCCTGTCAAGGTGGTGCCTGGCCCATGCGATCAGCCGTGATCGTGGTGACGTACTAGGGCGATGAGAAGAGATTCTCGGTGGAGGAATCTGGTCATGGTGCTACATGATGAAGAGATCGCGAGGCCTTCTCACACACCATCATGACGCCGCATAACGTACCGGCTACTTATCATTGCACGCAGTCATCAAGACCCGGGTATCTCGGCTTACGTTGCTCTTATTACGGCCTAGTGGCTTATGGCTCGGCTGACAAAGGGCTCTCTCGGAAAGAATGCCTATTTACCTGTTGGGATTTAGTGTAATCTGACTTTGAGGGCCTCAAGTAGTGTTGCGAGTACCCGTGTGGATGGTGTTACGAGGGGACATTGGCGGT]
[+] EMBL AU069411 [ AAAAACAGAGCAAAATCGTCCCAGCGCGAGCGAATCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTT ACCGACACCGAGAGGCTCATCGGCGACGCCGNCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGGCCGGCGCTTTTTCGGACCCCGTCGGTGCAAGCGGACATGAAAGATGTGGCC GTCAANGTGGTGCt ]
consensusID : consensus_11081#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 673 fasta sequence
[AAAAAAAACAGAGCAAAATCGTCCCAGCGCGA-CG-NA-TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACC-GACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGC-TGATCGGGCGGCGCTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGCCGTTCAAGG-TGGTGCC-TGGCCCAGCCGAC-AAGCCGATGATCGTGGTGACGTACAAGGGCGAGGAGAAGAAGTTCTCGGCGGAGGAGATCTCGTCCATGGTGCT-ACCAAGATGAAGGAGATCGCCGAGGCCTTCCTCAGCACCACCATCAAGAACGCCGTCATCACCGTCCCGGCCTACTTCAACGACTCCCAACGCCAGGCCACCAAGGACGCCGGCGTCATCTCCGGACTCAACGTCATGCGCATCATCAACGAGCCCACCGCCGGCCGCCATCGCNTA]
[+] EMBL AU069550 [AAAAAAAACAGAGCAAAATCGTCCCAGCGCGA G NANTCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACCNGACACCGAGAGGCTCATCGGCGACGCC CAAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAG GGC TTATCGGGCGGCGTTTTTCGGACCCGTCGGTGCAGGCGGACATTAAGATGTGGCCGTTNAAGG TTGTTCCTTGGCCCAGCCGACAAAGCCGATNATCGTGGTTACGT ]
[+] EMBL AU162017 [AAAAAAAACAGAGCAAAATCGTCCCAGCGCGAGCG AA TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACC GACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGC TGATCGGGCGGCGCTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGCCGTTCAAGG TGGTGCC TGGCCCACCCGAC AAGCCGATGATCGTGGT ]
[+] EMBL AU069365 [AAAAAAAACAGAGCAAAATCGTCCCAGCGCGA NG TA TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGNAGAGCTTNATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGNCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTAGCCTTCACC GACACCGAGAGGCTCATCGNCGACG CGNCAAGAACCAGGTCGNCATGAACCCCACCAACANCGTCTTTGATGCAAAGCGGCTTGATCGNGCGGCGGTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGNCGTTCAAGGTTGGTG C TGGCCCAGCCGAC AAGCCGTTG TCGTGGTGA ]
[+] EMBL AU162015 [ AAAAAACAGAGCAAAATCGTCCCAGCGCGAGCG AA TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACC GACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGC TGATCGGGCGGCGCTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGCCG TCAAGG TGGTGCC TGG CCA CCGAC AAGCCGATGATCGTGGTGACGTACAAGGGCGAGGAGAAGAAGTTCTCGGCGGAGGAGATCTCGTCCATGGTGCT ACCAAGATGAAGG ]
[+] EMBL AU161264 [ AAAAACAGAGCAAAATCGTCCCAGCGCGA CGANA TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACC GACACCGAGAGGCTCATCGGCGACG CGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGC TGATCGGGCGGCG TTTTCGGACCCGTCGGTGCAGGCGGACATGAA ]
[+] EMBL AU069308 [ AAAATCGTCCCAGCGCGA NG NA TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACC GACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGC TGATCGGGCGGCGCTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGCCGTTCAAGG TGGTGCC TGGCCCAGCCGAC AAGCCGATGATCGTGGTGACGTACAAGGGCGAGGAGAAGAAGTTCTCGGCGGAGGAGATCTCGTCCATGGTGCTCACCAAGATGAAGGAGATCGCCGAGGCCTTCCTCAGCACCACCATCAAGAACGCCGTCATCACCGTCCCGGCCTACTTCAACGACTCCCAACGCCAGGCCACCAAGGACGCCGGCGTCATCTCCGGACTCAACGTCATGCGCATCATCAACGAGCCCACCGCCGGCCGCCATCGCNTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11081#0 GAGATCGAAGCGAAAAAAAACAGAGCAAAATCGTCCCAGCGCGAGCGAATCAGAAGAGCA 60
consensus_11081#1 ------------AAAAAAAACAGAGCAAAATCGTCCCAGCGCGA-CGNATCAGAAGAGCA 47
******************************** ** ************
consensus_11081#0 ACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGA 120
consensus_11081#1 ACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGA 107
************************************************************
consensus_11081#0 AAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTAC 180
consensus_11081#1 AAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTAC 167
************************************************************
consensus_11081#0 TCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAAC 240
consensus_11081#1 TCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAAC 227
************************************************************
consensus_11081#0 CGCACCACGCCGTCGTACGTGGCCTTCACCGACACCGAGAGGCTCATCGGCGACGCCGCC 300
consensus_11081#1 CGCACCACGCCGTCGTACGTGGCCTTCACCGACACCGAGAGGCTCATCGGCGACGCCGCC 287
************************************************************
consensus_11081#0 AAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGG 360
consensus_11081#1 AAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGG 347
************************************************************
consensus_11081#0 CGGCGCTTCTCGGACCCGTCGGTGCATGCGGACATGAAGATGTGGCCTGTCAAGGTGGTG 420
consensus_11081#1 CGGCGCTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGCCGTTCAAGGTGGTG 407
************************** ******************** ***********
consensus_11081#0 CCTGGCCCATGCGATCAGCCG-TGATCGTGGTGACGTACTAGGGCGATGAGAAGAGATTC 479
consensus_11081#1 CCTGGCCCAGCCGACAAGCCGATGATCGTGGTGACGTACAAGGGCGAGGAGAAGAAGTTC 467
********* *** ***** ***************** ******* ******* ***
consensus_11081#0 TCGGTGGAGGA-ATCTGGTC-ATGGTGCTAC-ATGATGAAG-AGATCGC-GAGGCCTTCT 534
consensus_11081#1 TCGGCGGAGGAGATCTCGTCCATGGTGCTACCAAGATGAAGGAGATCGCCGAGGCCTTCC 527
**** ****** **** *** ********** * ******* ******* *********
consensus_11081#0 CACACACCATCATGACGCCGCATAACGTACCGGCTACTTATCATTGCACGCAGTCATCAA 594
consensus_11081#1 TCAGCACCACCATCAAGAACGCCGTCATCACCGTCCCGGCCTACTTCA-ACGACTCCCAA 586
***** *** * * * * * * * * * ** * ***
consensus_11081#0 GACCCGGGTATCTCGGCTTACGTTGCTCTTATTACGGCCTAGTGGCTTATGGCTCGGCTG 654
consensus_11081#1 CGCCAGGCCACCAAGGACGCCGGCG-TCATCTCCGGACTCAACGTCATGCGCATCATC-A 644
** ** * * ** ** * ** * * * * * * * * * ** *
consensus_11081#0 ACAAAGGGCTCTCTCGGAAAGAATGCCTATTTACCTGTTGGGATTTAGTGTAATCTGACT 714
consensus_11081#1 ACGAGCCCACCGCCGGCCGCCATCGCNTA------------------------------- 673
** * * * * * ** **
consensus_11081#0 TTGAGGGCCTCAAGTAGTGTTGCGAGTACCCGTGTGGATGGTGTTACGAGGGGACATTGG 774
consensus_11081#1 ------------------------------------------------------------
consensus_11081#0 CGGT 778
consensus_11081#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||