cluster # 11083

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Oryza sativa
cluster # 11083 cluster # 11083 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11083#0 length = 666 sequences # 7

consensus_11083#1 length = 556 sequences # 1

consensusID : consensus_11083#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 666
fasta sequence

                              [AATACTGCACTGCATAAGTTCAGAAAACTAGAGCAGATCGAGAATGGCATCCAAGAACCTCCTCCTCTCGGCCGCCGTGCTTC-TGTCCGTGCTCGCCATCGCCGCGGCGGCGGCTACGGCCAGCGCGGCGACGACGTCCTGCCAGCCGGGCAT-GCGATCCCGCACGACCCG-CTCC-GCGGCTGCCGCCGGTACGTGCTCCGGCGC-GCGTGCG-GCCTCGCCGCCGGCGGG-CGGCTGTACG-ACTGGTCG-CTGAAGGAGCTTTGCTGCCAGGAGCTC-GCCGCCGTGCCGGCCT-ACTGCCGGTGC-GCCGCG-CTGGCCTACTTCATGGACGGC-GCGTCCGA-GGGCCGCCTCCTGGAGGACCTCCCCGGATGCCCGA-GGGAGACGCAGAGGGGTCTCGCCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCA-TGGCGGACCGTACTGCCTCGAGCTCA-CCGACA-GGGAGATGCCCAAATACTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCA-CCGTGAATAAGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGTGCATCATCAGTGATGTGTGTTGAATAACAAGCATATATAC-AATGCTTTTTTTTCCCTTTTCTAACAAAAAAAAAA]

[+] EMBL AK107870             [AATACTGCACTGCATAAGTTCAGAAAACTAGAGCAGATCGAGAATGGCATCCAAGAACCTCCTCCTCTCGGCCGCCGTGCTTC TGTCCGTGCTCGCCATCGCCGCGGCGGCGGCTACGGCCAGCGCGGCGACGACGTCCTGCCAGCCGGGCATGGCGATCCCGCACGACCCG CTCC GCGGCTGCCGCCGGTACGTGCTCCGGCGC GCGTGCG GCCTCGCCGCCGGCGGG CGGCTGTACG ACTGGTCG CTGAAGGAGCGTTGCTGCCAGGAGCTC GCCGCCGTGCCGGCCT ACTGCCGGTGC GCCGCG CTGGCCTACTTCATGGACGGC GCGTCCGA GGGCCGCCTCCTGGAGGACCTCCCCGGATGCCCGA GGGAGACGCAGAGGGGTCTCGCCGCCGTGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCA TGGCGGACCGTACTGCCTCGAGCTCA CCGACA GGGAGATGCCCAAATATTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCA CCGTGAATAAGTGTTGCTAATCGCATCAATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGTGCATCATCAGTGATGTGTGTTGAATAACAAGCATATATAC AA                                 ]
[+] EMBL BI800897             [                                                                             gctTTCGTGTCCGTGGTTCCCATC CC C GCGGCGGTTAC GCCAGC CGCGGACGACGTCCT CCA CCGGCCAT GCGATCCCGCACGACCCG CTCC GCGGCTTCCCCCGGTACGTGCTCCGGCGC GCGTGCG GCCTC CCGCCGGCGGG CGGCTGTACG ACTGGTCG CTGAAGGAGCTTTGCTGCCGGGAGCTC  CC CCGTGCCGGCCT ACTGCCGGTGC GCCGCG CTGGCCTACTTCATGGACGGC GCGTCCGA  GGCC CCTCCTGGAGGACCTCCCCGGATGCCCGA GGGAGACGCAGAGGGTTCTC CCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCA TGGCGGACCGTACTGCCTCGAGCTCA CCGACA GGGAGATGCCCCAATACTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCA CCGTGAATAAGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGTGCATCATCAGTGATGTGTGTTGAATAACAAGCATATATACAAATGCTTTTTTTTCCCTTTTCCAACAAAAAAAAAA]
[+] EMBL BI796517             [                                                                                                                                           CTGCCAGCCGGGCAT GCGATCCCGCACGACCCGTCTCC GCGGCTGCCGCCGGTACGTGCTCCGGCGC GCGTGCG GCCTCGCCGCCGGC GG CGGCTGTACG ACTGGTCG CTGAAGGAGCTTTGCTGCCGGGAGCTC GCCGCCGTGCCGGCCT ACTGCCGGTGC GCCGCG CTGGCCTACTTCATGGACGGC GCGTCCGA GGGCCGCCTCCTGGAGGACCTCCCCGGATGCCCGA GGGAGACGCAGAGGGGTCTCGCCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCA TGGCGGACCGTACTGCCTCGAGCTCA CCGACA GGGAGATGCCCAAATACTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCA CCGTGAATAAGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGTGCATCATCAGTGATGTGTGTTGAATAACAAGCATATATAC  ATGCTTTTTTTTCCCTTTTCAAAaa         ]
[+] EMBL BI802376             [                                                                                                                                                                  CGCACGACCCGTCTCCTGCGGCTGCCTCCGGTACGTGCTCCGGCGCTGCGTTCGTGCCTCGCCGCCGGCGGGTCGGCTGTACGTACTGGTCGTCTGAAGGAGCTTTGCTGCCGGGAGCTCTGCCGCCGTGCCGGCCT ACTGCCGGTGCTGCCGCG CTGGCCTACTTCATGGACGGCTGCGTCCGATGGGCCGCCTCCTGGAGGACCTCCCCGGATGCCCGATGGGAGACGCAGAGGGGTCTCGCCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCACTGGCGGACCGTACTGCCTCGAGCTCATCCGACACGGGAGATGCCCAAATACTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCACCCGTGAATAAGTGTTGCTAATCGCATCGATCTATGGTCCCTGGATCATCACATGAATGCATGCTTGAGTGCATCATCAGTGATGTGTGTTGAATAACCAGCATATATAC CATGCTTTTTTTTCCC      AAAAAAAAAA   ]
[+] EMBL OSC194               [                                                                                                                                                                                                                                                                                CCAGGAGCTC GCCGCCGTGCC CCNTNACTGCCGTNGC GCCGCG CTGGCCTACTTCATGGACGGC GCGT CGA GGGCCGCCTCCT   GGACCTCCCCGGATGCCCGA GGGAGACGCAGAGGGGTCTCGCCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCA TGGCGGACCGTACTGCCTCGAGCTCA CCGACA  GGAGATGCCCAAATATTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCA CCGTGAATAAGTGTTGCTAATCGCATCAATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGTGCATCATCAGTGATGTGTGTTGAATAACAAGCATATATAC AATGCTTTTTTTT CCTTTTCTGACAAAANAAA  ]
[+] EMBL AU101302             [                                                                                                                                                                                                                                                                                 CAGGAGCTCGGCCCCCGTGCCGGCCT ACTGCCGGTGC GCCGCG CTGGCCTACTTCATGGACGGC GCGTCCGA GGGCCGCCTCCTG  GCACCTCCCCGGATGCCCGA GGGAGACGCAGAGGGGTCTCGCCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCA TGGCGGACCGTACTGCCTCGAGCTCA CCGACA GGGAGATGCCCAAATATTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCA CCGTGAATAAGTGTTGCTAATCGCATCAATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGTGCATCATCAGTGATGTGTGTTGAATAACAAGCATATATAC AATGCTTTTTTTTCCCTTTTCTGACAAAAAA    ]
[+] EMBL BI801714             [                                                                                                                                                                                                                                                                                                         CT ACTGCCGGTGC  CCGCGCCTGGCCTACTTCATGGACGGC GCGTCCGA  GGCCGCCTCCTGGAGGACCTCCCCGGATGCCCGA GGGAGACGCAGAGGGGTCTC CCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCA TGGCGGACCGTACTGCCTCGAGCTCA CCGACA GGGAGATGCCCAAATACTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCA CCGTGAATAAGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGTGCATCATCAGTGATGTGTGTTGAATAACAAGCATATATAC AATGCTTTTTTTTCCaaaaaa              ]




>consensus_11083#0
AATACTGCACTGCATAAGTTCAGAAAACTAGAGCAGATCGAGAATGGCATCCAAGAACCT
CCTCCTCTCGGCCGCCGTGCTTCTGTCCGTGCTCGCCATCGCCGCGGCGGCGGCTACGGC
CAGCGCGGCGACGACGTCCTGCCAGCCGGGCATGCGATCCCGCACGACCCGCTCCGCGGC
TGCCGCCGGTACGTGCTCCGGCGCGCGTGCGGCCTCGCCGCCGGCGGGCGGCTGTACGAC
TGGTCGCTGAAGGAGCTTTGCTGCCAGGAGCTCGCCGCCGTGCCGGCCTACTGCCGGTGC
GCCGCGCTGGCCTACTTCATGGACGGCGCGTCCGAGGGCCGCCTCCTGGAGGACCTCCCC
GGATGCCCGAGGGAGACGCAGAGGGGTCTCGCCGCCATGCTCACCACGCCCGGCGAGTGC
AACCTCGAGACCATCCATGGCGGACCGTACTGCCTCGAGCTCACCGACAGGGAGATGCCC
AAATACTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCACCGTGAATAAGTGTTGCT
AATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGTGCATCATCA
GTGATGTGTGTTGAATAACAAGCATATATACAATGCTTTTTTTTCCCTTTTCTAACAAAA
AAAAAA

consensusID : consensus_11083#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence

                              [ACGCCAGCGCGGGTGTGCACTTCCTGCCATCCGGGCATGGCGATCCCGCACTGACCCGCTCCCGCGGCTCCCGCCGGTACGTGTCTCCGGCGCGCGTCAGGCCTCCCCCGCGGTCGTCTGTACGACTGGTCTTCTGAAGGTATCTTTCCTGTCCGGGAGCTCGCTCCCCGTGCCGCCCTTCTGCCGGTGCTCCGCGCTGGCCTACTTCATGGACGGCGCGTCCGAGGGTCCCCCTCCTGGAGGACCTCCCCGGATGCCCGAGGGAGACGCAGAGGGGTCTCCCCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCCTGGCGGACCGTTCTGCCTCGAGCTCACCGACAGGGAGATGCCCAAATTACTGAATTGAAGTGTATGGATTAATTAGTAGTGTGTTCACCGTGAATACAGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGCCCATCACTCAGTGATGTCTGTTGAATAACAAGCATATATACCATGCTTTTTTTTCCCTTTAAAAAAAAAAA]

[+] EMBL BI801738             [ACGCCAGCGCGGGTGTGCACTTCCTGCCATCCGGGCATGGCGATCCCGCACTGACCCGCTCCCGCGGCTCCCGCCGGTACGTGTCTCCGGCGCGCGTCAGGCCTCCCCCGCGGTCGTCTGTACGACTGGTCTTCTGAAGGTATCTTTCCTGTCCGGGAGCTCGCTCCCCGTGCCGCCCTTCTGCCGGTGCTCCGCGCTGGCCTACTTCATGGACGGCGCGTCCGAGGGTCCCCCTCCTGGAGGACCTCCCCGGATGCCCGAGGGAGACGCAGAGGGGTCTCCCCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCCTGGCGGACCGTTCTGCCTCGAGCTCACCGACAGGGAGATGCCCAAATTACTGAATTGAAGTGTATGGATTAATTAGTAGTGTGTTCACCGTGAATACAGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGCCCATCACTCAGTGATGTCTGTTGAATAACAAGCATATATACCATGCTTTTTTTTCCCTTTAAAAAAAAAAA]




>consensus_11083#1
ACGCCAGCGCGGGTGTGCACTTCCTGCCATCCGGGCATGGCGATCCCGCACTGACCCGCT
CCCGCGGCTCCCGCCGGTACGTGTCTCCGGCGCGCGTCAGGCCTCCCCCGCGGTCGTCTG
TACGACTGGTCTTCTGAAGGTATCTTTCCTGTCCGGGAGCTCGCTCCCCGTGCCGCCCTT
CTGCCGGTGCTCCGCGCTGGCCTACTTCATGGACGGCGCGTCCGAGGGTCCCCCTCCTGG
AGGACCTCCCCGGATGCCCGAGGGAGACGCAGAGGGGTCTCCCCGCCATGCTCACCACGC
CCGGCGAGTGCAACCTCGAGACCATCCCTGGCGGACCGTTCTGCCTCGAGCTCACCGACA
GGGAGATGCCCAAATTACTGAATTGAAGTGTATGGATTAATTAGTAGTGTGTTCACCGTG
AATACAGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCT
TGAGCCCATCACTCAGTGATGTCTGTTGAATAACAAGCATATATACCATGCTTTTTTTTC
CCTTTAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11083#0      AATACTGCACTGCATAAGTTCAGAAAACTAGAGCAGATCGAGAATGGCATCCAAGAACCT 60
consensus_11083#1      ------------------------------------------------------------
                                                                                   

consensus_11083#0      CCTCCTCTCGGCCGCCGTGCTTCTGTCCGTGCTCGCCATCGCCGCGGCGGCGGCTACGGC 120
consensus_11083#1      -------------------------------------------------------ACG-C 4
                                                                              *** *

consensus_11083#0      CAGCGCGGCGACG-ACGTCCTGCCAGCCGGGCATG-CGATCCCGCAC-GACCCGCTCC-G 176
consensus_11083#1      CAGCGCGGGTGTGCACTTCCTGCCATCCGGGCATGGCGATCCCGCACTGACCCGCTCCCG 64
                       ********    * ** ******** ********* *********** ********** *

consensus_11083#0      CGGCTGCCGCCGGTACGTG-CTCCGGCGCGCGTGCGGCCTCGCCGCCGGCGGGCGGCTGT 235
consensus_11083#1      CGGCTCCCGCCGGTACGTGTCTCCGGCGCGCGTCAGGCCTCCCC---CGCGGTCGTCTGT 121
                       ***** ************* *************  ****** **    **** ** ****

consensus_11083#0      ACGACTGGTCG-CTGAAGG-AGCTTTGCTG-CCAGGAGCTCGC-CGCCGTGCCGGCCTAC 291
consensus_11083#1      ACGACTGGTCTTCTGAAGGTATCTTTCCTGTCCGGGAGCTCGCTCCCCGTGCCGCCCTTC 181
                       **********  ******* * **** *** ** ********* * ******** *** *

consensus_11083#0      TGCCGGTGCGCCGCGCTGGCCTACTTCATGGACGGCGCGTCCGAGGG-CCGCCTCCTGGA 350
consensus_11083#1      TGCCGGTGCTCCGCGCTGGCCTACTTCATGGACGGCGCGTCCGAGGGTCCCCCTCCTGGA 241
                       ********* ************************************* ** *********

consensus_11083#0      GGACCTCCCCGGATGCCCGAGGGAGACGCAGAGGGGTCTCGCCGCCATGCTCACCACGCC 410
consensus_11083#1      GGACCTCCCCGGATGCCCGAGGGAGACGCAGAGGGGTCTCCCCGCCATGCTCACCACGCC 301
                       **************************************** *******************

consensus_11083#0      CGGCGAGTGCAACCTCGAGACCATCCATGGCGGACCGTACTGCCTCGAGCTCACCGACAG 470
consensus_11083#1      CGGCGAGTGCAACCTCGAGACCATCCCTGGCGGACCGTTCTGCCTCGAGCTCACCGACAG 361
                       ************************** *********** *********************

consensus_11083#0      GGAGATGCCCAAAT-ACTGAATTGAAGTG-ATGGATTAATTAGTAGTGTGTTCACCGTGA 528
consensus_11083#1      GGAGATGCCCAAATTACTGAATTGAAGTGTATGGATTAATTAGTAGTGTGTTCACCGTGA 421
                       ************** ************** ******************************

consensus_11083#0      ATA-AGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTT 587
consensus_11083#1      ATACAGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTT 481
                       *** ********************************************************

consensus_11083#0      GAGTGCATCA-TCAGTGATGTGTGTTGAATAACAAGCATATATACAATGCTTTTTTTTCC 646
consensus_11083#1      GAGCCCATCACTCAGTGATGTCTGTTGAATAACAAGCATATATACCATGCTTTTTTTTCC 541
                       ***  ***** ********** *********************** **************

consensus_11083#0      CTTTTCTAACAAAAAAAAAA 666
consensus_11083#1      CTTT---AAAAAAAAAAA-- 556
                       ****   ** ********