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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1109#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2191 fasta sequence
[CCCTTCTCCCCTCCTTCCTCGCTAAGGTTCCCTTGCTTCAGCAGAACCCCTGCTGGGCATCCTCCTCTTTCAAAACATCCTTTGCTCTCCAACCACTTCATCTTGATGTTCTTAATCTCCTATAGTCTTTCCCTGTGCGAATTTTTTCTTTGAGAACCAAAGTTTCTTAGGGAAATTCTGTTGAATTTTTCCTTTGAGAACCAAGGTTTCTCGGGGAGACTCTGCTAAAATTTTTATCAACTAGCAAGTTGAAAATACATCATTGTACATATATTTTGTCTGCACATTTATATACAGTAGCAAAACCTGTTTGTAGAGGGAATTATTATAGTGTTTCTGGCTGGTTGATCCATGATAGATTAAACAAGGGGAGGTTGTGACTTGGTAGATGTCACCAATCCTCTCCGAGGTCATCCTCTCCGGATTTATGATCAGCTCGACGCTCCGGCGAGGCTCTCATCTTGTCCTCTCTTTCTCCGTCGTCTTCCTTTACTGGTTCTATGTCTTCTCAGTAACATCCTAGCTACTGTTCTCTTTTATTTGATCTATCCAATACCAGAGAATAGACCACCATATTCTACAAAATACTTCTCATTGGAAATTATAGCTTATAGACAAAACTGAGGGTGACAATACTGTAAGGTATTTTCCTGAGTGTTGCACTAAGGAGGGTACTCAGGACTTTTATTAGGATGACCCTGTCAGGTGGGACCCTGTCAAGCGGGATAACCTCTGGCTCAAGCCATGGGACCCGGAGCTCAGGGTCAGAGGGTGATATCCAGCTGCAGGTCCAAATGGACCTGAAGCGGAAAAGAAGGAAGGAATCAAACCGAGAGTCGGCAAAGAGGTCTAGGTTACGGAAACAACAGCACCTCGATGACCTTACCTCACAGGTATGTTTGAATTCCTTTTTTTTCCCTATCTATATACATATATATATAATATGGTTGCATTTGTTATGTAGATTTTAATATGTTTGTAGTTCCTAGCTTTAATTAGTTTGCTTTATGGATTGAAGCTTGCACTCATGTGCAGGTGAATTTGATACACAAAAGCAAAATCAGATGAAAAAGGACACTTGAGCTGAAGGACTTGCTCAAGGAAACTCCAATAATGCACACGGTGCCCTTTTTTCAAGGGGCCCCAACTAATTGCTTCGTACATAATACTTGAAAAACATTAAACTCGCTATCACTTCCAAAGAAAAAGGTGATAGGCAACTAGTTACCAACAATTGCTCCCAACTGTCAAATCTGGAAATAAGAGCAAGCTCATCGAAATTTCTTGATGCCGATCAAGACCGGATCAAGCTTATGTTTTGCTCCGGAAATGTGAAGGCAAATTTCTATGAACTGTCAGATATCGCAAGAAACCTTCATCCAGAATTTCATTCATTTTTCCAGATTAATCGTACCAACAATAGTAGGAAAAGATTTCAGAATGTTGCTTGAACAAATTAGCAAAATAATACATACCAGTGTAACATAAATAAATAGCACAATTCACCAGATGCACATGGTAGATAGTAATTACTTGCACAATCTAAAATCTGTTCTGTTCATCACAGCTTCCTTCAGCAAATCCAAAAAAAAAATGTTTATGTTAAAAAGGAATGTTATCTTGATTATATAAAATAGGTGAACCAGTTGAAGATGGAGAACCAGCAGCTCACCACAACATTGAACATGGTCACCCAAAGCTGTGCCTTCGCAGAGTCTCAGAACTCAGTGCTGCGCACTCAGATGATGGAGCTGGATAGCAGGCTATCAGCGCTCCGTGAGATAATCTTCTACATGAACAATGGAAACCAATCACCTTCTAATCCTACAATAGCAGCGACTACATACCCATCCACCACTACAATGACTGCAGCAACTACTGGCCATTACGATTATTATGATGTTTTCACTGCAAATGCATGGGGCTCAGGGATGCAAATGATGCAGCAGCCCATAGATCAGTTTCTGTACCAGTGCTAGCTAGCTTCTAGCCAGGAAGTCGATAGAGATAGTGGACCAAATTAAGAAACAGGGCATTGAGATATTGGGCGTGGTGAATGTTGTAGCTAGGTCCATATTAATTATATTGTGTCACCAGTGGTTGTTTATCTTTTGCTTTGATTTGTGATCGGTTGTGGGGGCAGGAAAAAAATGGTGTTGTACCTTTCTGCTGTTGGTGGTAAGAGGCCAAA]
[+] EMBL AK100580 [CCCTTCTCCCCTCCTTCCTCGCTAAGGTTCCCTTGCTTCAGCAGAACCCCTGCTGGGCATCCTCCTCTTTCAAAACATCCTTTGCTCTCCAACCACTTCATCTTGATGTTCTTAATCTCCTATAGTCTTTCCCTGTGCGAATTTTTTCTTTGAGAACCAAAGTTTCTTAGGGAAATTCTGTTGAATTTTTCCTTTGAGAACCAAGGTTTCTCGGGGAGACTCTGCTAAAATTTTTATCAACTAGCAAGTTGAAAATACATCATTGTACATATATTTTGTCTGCACATTTATATACAGTAGCAAAACCTGTTTGTAGAGGGAATTATTATAGTGTTTCTGGCTGGTTGATCCATGATAGATTAAACAAGGGGAGGTTGTGACTTGGTAGATGTCACCAATCCTCTCCGAGGTCATCCTCTCCGGATTTATGATCAGCTCGACGCTCCGGCGAGGCTCTCATCTTGTCCTCTCTTTCTCCGTCGTCTTCCTTTACTGGTTCTATGTCTTCTCAGTAACATCCTAGCTACTGTTCTCTTTTATTTGATCTATCCAATACCAGAGAATAGACCACCATATTCTACAAAATACTTCTCATTGGAAATTATAGCTTATAGACAAAACTGAGGGTGACAATACTGTAAGGTATTTTCCTGAGTGTTGCACTAAGGAGGGTACTCAGGACTTTTATTAGGATGACCCTGTCAGGTGGGACCCTGTCAAGCGGGATAACCTCTGGCTCAAGCCATGGGACCCGGAGCTCAGGGTCAGAGGGTGATATCCAGCTGCAGGTCCAAATGGACCTGAAGCGGAAAAGAAGGAAGGAATCAAACCGAGAGTCGGCAAAGAGGTCTAGGTTACGGAAACAACAGCACCTCGATGACCTTACCTCACAGGTATGTTTGAATTCCTTTTTTTTCCCTATCTATATACATATATATATAATATGGTTGCATTTGTTATGTAGATTTTAATATGTTTGTAGTTCCTAGCTTTAATTAGTTTGCTTTATGGATTGAAGCTTGCACTCATGTGCAGGTGAATTTGATACACAAAAGCAAAATCAGATGAAAAAGGACACTTGAGCTGAAGGACTTGCTCAAGGAAACTCCAATAATGCACACGGTGCCCTTTTTTCAAGGGGCCCCAACTAATTGCTTCGTACATAATACTTGAAAAACATTAAACTCGCTATCACTTCCAAAGAAAAAGGTGATAGGCAACTAGTTACCAACAATTGCTCCCAACTGTCAAATCTGGAAATAAGAGCAAGCTCATCGAAATTTCTTGATGCCGATCAAGACCGGATCAAGCTTATGTTTTGCTCCGGAAATGTGAAGGCAAATTTCTATGAACTGTCAGATATCGCAAGAAACCTTCATCCAGAATTTCATTCATTTTTCCAGATTAATCGTACCAACAATAGTAGGAAAAGATTTCAGAATGTTGCTTGAACAAATTAGCAAAATAATACATACCAGTGTAACATAAATAAATAGCACAATTCACCAGATGCACATGGTAGATAGTAATTACTTGCACAATCTAAAATCTGTTCTGTTCATCACAGCTTCCTTCAGCAAATCCAAAAAAAAAATGTTTATGTTAAAAAGGAATGTTATCTTGATTATATAAAATAGGTGAACCAGTTGAAGATGGAGAACCAGCAGCTCACCACAACATTGAACATGGTCACCCAAAGCTGTGCCTTCGCAGAGTCTCAGAACTCAGTGCTGCGCACTCAGATGATGGAGCTGGATAGCAGGCTATCAGCGCTCCGTGAGATAATCTTCTACATGAACAATGGAAACCAATCACCTTCTAATCCTACAATAGCAGCGACTACATACCCATCCACCACTACAATGACTGCAGCAACTACTGGCCATTACGATTATTATGATGTTTTCACTGCAAATGCATGGGGCTCAGGGATGCAAATGATGCAGCAGCCCATAGATCAGTTTCTGTACCAGTGCTAGCTAGCTTCTAGCCAGGAAGTCGATAGAGATAGTGGACCAAATTAAGAAACAGGGCATTGAGATATTGGGCGTGGTGAATGTTGTAGCTAGGTCCATATTAATTATATTGTGTCACCAGTGGTTGTTTATCTTTTGCTTTGATTTGTGATCGGTTGTGGGGGCAGGAAAAAAATGGTGTTGTACCTTTCTGCTGTTGGTGGTAAGAGGCCAAA]
consensusID : consensus_1109#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence
[GGAAGGAATCAAACCGAGAGTCGGCAAAGAGGTCTAGGTTACGGAAACAACAGCACCTCGATGACCTTACCTCACAGGTGAACCAGTTGAAGATGGAGAACCAGCAGCTCACCACAACATTGAACATGGTCACCCAAAGCTGTGCCTTCGCAGAGTCTCAGAACTCAGTGCTGCGCACTCAGATGATGGAGCTGGATAGCAGGCTATCAGCGCTCCGTGAGATAATCTTCTACATGAACAATGGAAACCAATCACCTTCTAATCCTACAATAGCAGCGACTACATACCCATCCACCACTACAATGACTGCAGCAACTACTGGCCATTACGATTATTATGATGTTTTCACTGCAAATGCATGGGGCTCAGGGATGCAAATGATGCAGCAGCCCATAGATCAGTTTCTGTACCAGTGCTAGCTAGCTTCTAGCCAGGAAGTCGATAGAGATAGTGGACCAAATTAAGAAACAGGGCATTGAGATATTGGGCGTGGTGAATGTTGTAGCTAGGTCCATATTAATTATATTGTGTCACCAGTGGTTGTTTATCTTTTGCTTTGATTTGTGATCGGTTGTGGGGGCAGGAAAAAAATGGTGTTGTACCTTTCTGCTGTTGGTGGTAAGAGGCCAAATGGCTATTGGAAAAAAAAAC]
[-] EMBL CF326163 [GGAAGGAATCAAACCGAGAGTCGGCAAAGAGGTCTAGGTTACGGAAACAACAGCACCTCGATGACCTTACCTCACAGGTGAACCAGTTGAAGATGGAGAACCAGCAGCTCACCACAACATTGAACATGGTCACCCAAAGCTGTGCCTTCGCAGAGTCTCAGAACTCAGTGCTGCGCACTCAGATGATGGAGCTGGATAGCAGGCTATCAGCGCTCCGTGAGATAATCTTCTACATGAACAATGGAAACCAATCACCTTCTAATCCTACAATAGCAGCGACTACATACCCATCCACCACTACAATGACTGCAGCAACTACTGGCCATTACGATTATTATGATGTTTTCACTGCAAATGCATGGGGCTCAGGGATGCAAATGATGCAGCAGCCCATAGATCAGTTTCTGTACCAGTGCTAGCTAGCTTCTAGCCAGGAAGTCGATAGAGATAGTGGACCAAATTAAGAAACAGGGCATTGAGATATTGGGCGTGGTGAATGTTGTAGCTAGGTCCATATTAATTATATTGTGTCACCAGTGGTTGTTTATCTTTTGCTTTGATTTGTGATCGGTTGTGGGGGCAGGAAAAAAATGGTGTTGTACCTTTCTGCTGTTGGTGGTAAGAGGCCAAATGGCTATTGGAAAAAAAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1109#0 CCCTTCTCCCCTCCTTCCTCGCTAAGGTTCCCTTGCTTCAGCAGAACCCCTGCTGGGCAT 60
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 CCTCCTCTTTCAAAACATCCTTTGCTCTCCAACCACTTCATCTTGATGTTCTTAATCTCC 120
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 TATAGTCTTTCCCTGTGCGAATTTTTTCTTTGAGAACCAAAGTTTCTTAGGGAAATTCTG 180
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 TTGAATTTTTCCTTTGAGAACCAAGGTTTCTCGGGGAGACTCTGCTAAAATTTTTATCAA 240
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 CTAGCAAGTTGAAAATACATCATTGTACATATATTTTGTCTGCACATTTATATACAGTAG 300
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 CAAAACCTGTTTGTAGAGGGAATTATTATAGTGTTTCTGGCTGGTTGATCCATGATAGAT 360
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 TAAACAAGGGGAGGTTGTGACTTGGTAGATGTCACCAATCCTCTCCGAGGTCATCCTCTC 420
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 CGGATTTATGATCAGCTCGACGCTCCGGCGAGGCTCTCATCTTGTCCTCTCTTTCTCCGT 480
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 CGTCTTCCTTTACTGGTTCTATGTCTTCTCAGTAACATCCTAGCTACTGTTCTCTTTTAT 540
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 TTGATCTATCCAATACCAGAGAATAGACCACCATATTCTACAAAATACTTCTCATTGGAA 600
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 ATTATAGCTTATAGACAAAACTGAGGGTGACAATACTGTAAGGTATTTTCCTGAGTGTTG 660
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 CACTAAGGAGGGTACTCAGGACTTTTATTAGGATGACCCTGTCAGGTGGGACCCTGTCAA 720
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 GCGGGATAACCTCTGGCTCAAGCCATGGGACCCGGAGCTCAGGGTCAGAGGGTGATATCC 780
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 AGCTGCAGGTCCAAATGGACCTGAAGCGGAAAAGAAGGAAGGAATCAAACCGAGAGTCGG 840
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 CAAAGAGGTCTAGGTTACGGAAACAACAGCACCTCGATGACCTTACCTCACAGGTATGTT 900
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 TGAATTCCTTTTTTTTCCCTATCTATATACATATATATATAATATGGTTGCATTTGTTAT 960
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 GTAGATTTTAATATGTTTGTAGTTCCTAGCTTTAATTAGTTTGCTTTATGGATTGAAGCT 1020
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 TGCACTCATGTGCAGGTGAATTTGATACACAAAAGCAAAATCAGATGAAAAAGGACACTT 1080
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 GAGCTGAAGGACTTGCTCAAGGAAACTCCAATAATGCACACGGTGCCCTTTTTTCAAGGG 1140
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 GCCCCAACTAATTGCTTCGTACATAATACTTGAAAAACATTAAACTCGCTATCACTTCCA 1200
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 AAGAAAAAGGTGATAGGCAACTAGTTACCAACAATTGCTCCCAACTGTCAAATCTGGAAA 1260
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 TAAGAGCAAGCTCATCGAAATTTCTTGATGCCGATCAAGACCGGATCAAGCTTATGTTTT 1320
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 GCTCCGGAAATGTGAAGGCAAATTTCTATGAACTGTCAGATATCGCAAGAAACCTTCATC 1380
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 CAGAATTTCATTCATTTTTCCAGATTAATCGTACCAACAATAGTAGGAAAAGATTTCAGA 1440
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 ATGTTGCTTGAACAAATTAGCAAAATAATACATACCAGTGTAACATAAATAAATAGCACA 1500
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 ATTCACCAGATGCACATGGTAGATAGTAATTACTTGCACAATCTAAAATCTGTTCTGTTC 1560
consensus_1109#1 ------------------------------------------------------------
consensus_1109#0 ATCACAGCTTCCTTCAGCAAATCCAAAAAAAAAATGTTTATGTTA-AAAAGGAATGTTAT 1619
consensus_1109#1 -GGAAGGAATCAAACCGAGAGTC---GGCAAAGAGGTCTAGGTTACGGAAACAACAGCAC 56
* * ** * * * ** *** * ** ** **** ** ** *
consensus_1109#0 CTTGATTATATAAA---ATAGGTGAACCAGTTGAAGATGGAGAACCAGCAGCTCACCACA 1676
consensus_1109#1 CTCGATGACCTTACCTCACAGGTGAACCAGTTGAAGATGGAGAACCAGCAGCTCACCACA 116
** *** * * * * *****************************************
consensus_1109#0 ACATTGAACATGGTCACCCAAAGCTGTGCCTTCGCAGAGTCTCAGAACTCAGTGCTGCGC 1736
consensus_1109#1 ACATTGAACATGGTCACCCAAAGCTGTGCCTTCGCAGAGTCTCAGAACTCAGTGCTGCGC 176
************************************************************
consensus_1109#0 ACTCAGATGATGGAGCTGGATAGCAGGCTATCAGCGCTCCGTGAGATAATCTTCTACATG 1796
consensus_1109#1 ACTCAGATGATGGAGCTGGATAGCAGGCTATCAGCGCTCCGTGAGATAATCTTCTACATG 236
************************************************************
consensus_1109#0 AACAATGGAAACCAATCACCTTCTAATCCTACAATAGCAGCGACTACATACCCATCCACC 1856
consensus_1109#1 AACAATGGAAACCAATCACCTTCTAATCCTACAATAGCAGCGACTACATACCCATCCACC 296
************************************************************
consensus_1109#0 ACTACAATGACTGCAGCAACTACTGGCCATTACGATTATTATGATGTTTTCACTGCAAAT 1916
consensus_1109#1 ACTACAATGACTGCAGCAACTACTGGCCATTACGATTATTATGATGTTTTCACTGCAAAT 356
************************************************************
consensus_1109#0 GCATGGGGCTCAGGGATGCAAATGATGCAGCAGCCCATAGATCAGTTTCTGTACCAGTGC 1976
consensus_1109#1 GCATGGGGCTCAGGGATGCAAATGATGCAGCAGCCCATAGATCAGTTTCTGTACCAGTGC 416
************************************************************
consensus_1109#0 TAGCTAGCTTCTAGCCAGGAAGTCGATAGAGATAGTGGACCAAATTAAGAAACAGGGCAT 2036
consensus_1109#1 TAGCTAGCTTCTAGCCAGGAAGTCGATAGAGATAGTGGACCAAATTAAGAAACAGGGCAT 476
************************************************************
consensus_1109#0 TGAGATATTGGGCGTGGTGAATGTTGTAGCTAGGTCCATATTAATTATATTGTGTCACCA 2096
consensus_1109#1 TGAGATATTGGGCGTGGTGAATGTTGTAGCTAGGTCCATATTAATTATATTGTGTCACCA 536
************************************************************
consensus_1109#0 GTGGTTGTTTATCTTTTGCTTTGATTTGTGATCGGTTGTGGGGGCAGGAAAAAAATGGTG 2156
consensus_1109#1 GTGGTTGTTTATCTTTTGCTTTGATTTGTGATCGGTTGTGGGGGCAGGAAAAAAATGGTG 596
************************************************************
consensus_1109#0 TTGTACCTTTCTGCTGTTGGTGGTAAGAGGCCAAA-------------------- 2191
consensus_1109#1 TTGTACCTTTCTGCTGTTGGTGGTAAGAGGCCAAATGGCTATTGGAAAAAAAAAC 651
***********************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||