These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1109#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2191 fasta sequence [CCCTTCTCCCCTCCTTCCTCGCTAAGGTTCCCTTGCTTCAGCAGAACCCCTGCTGGGCATCCTCCTCTTTCAAAACATCCTTTGCTCTCCAACCACTTCATCTTGATGTTCTTAATCTCCTATAGTCTTTCCCTGTGCGAATTTTTTCTTTGAGAACCAAAGTTTCTTAGGGAAATTCTGTTGAATTTTTCCTTTGAGAACCAAGGTTTCTCGGGGAGACTCTGCTAAAATTTTTATCAACTAGCAAGTTGAAAATACATCATTGTACATATATTTTGTCTGCACATTTATATACAGTAGCAAAACCTGTTTGTAGAGGGAATTATTATAGTGTTTCTGGCTGGTTGATCCATGATAGATTAAACAAGGGGAGGTTGTGACTTGGTAGATGTCACCAATCCTCTCCGAGGTCATCCTCTCCGGATTTATGATCAGCTCGACGCTCCGGCGAGGCTCTCATCTTGTCCTCTCTTTCTCCGTCGTCTTCCTTTACTGGTTCTATGTCTTCTCAGTAACATCCTAGCTACTGTTCTCTTTTATTTGATCTATCCAATACCAGAGAATAGACCACCATATTCTACAAAATACTTCTCATTGGAAATTATAGCTTATAGACAAAACTGAGGGTGACAATACTGTAAGGTATTTTCCTGAGTGTTGCACTAAGGAGGGTACTCAGGACTTTTATTAGGATGACCCTGTCAGGTGGGACCCTGTCAAGCGGGATAACCTCTGGCTCAAGCCATGGGACCCGGAGCTCAGGGTCAGAGGGTGATATCCAGCTGCAGGTCCAAATGGACCTGAAGCGGAAAAGAAGGAAGGAATCAAACCGAGAGTCGGCAAAGAGGTCTAGGTTACGGAAACAACAGCACCTCGATGACCTTACCTCACAGGTATGTTTGAATTCCTTTTTTTTCCCTATCTATATACATATATATATAATATGGTTGCATTTGTTATGTAGATTTTAATATGTTTGTAGTTCCTAGCTTTAATTAGTTTGCTTTATGGATTGAAGCTTGCACTCATGTGCAGGTGAATTTGATACACAAAAGCAAAATCAGATGAAAAAGGACACTTGAGCTGAAGGACTTGCTCAAGGAAACTCCAATAATGCACACGGTGCCCTTTTTTCAAGGGGCCCCAACTAATTGCTTCGTACATAATACTTGAAAAACATTAAACTCGCTATCACTTCCAAAGAAAAAGGTGATAGGCAACTAGTTACCAACAATTGCTCCCAACTGTCAAATCTGGAAATAAGAGCAAGCTCATCGAAATTTCTTGATGCCGATCAAGACCGGATCAAGCTTATGTTTTGCTCCGGAAATGTGAAGGCAAATTTCTATGAACTGTCAGATATCGCAAGAAACCTTCATCCAGAATTTCATTCATTTTTCCAGATTAATCGTACCAACAATAGTAGGAAAAGATTTCAGAATGTTGCTTGAACAAATTAGCAAAATAATACATACCAGTGTAACATAAATAAATAGCACAATTCACCAGATGCACATGGTAGATAGTAATTACTTGCACAATCTAAAATCTGTTCTGTTCATCACAGCTTCCTTCAGCAAATCCAAAAAAAAAATGTTTATGTTAAAAAGGAATGTTATCTTGATTATATAAAATAGGTGAACCAGTTGAAGATGGAGAACCAGCAGCTCACCACAACATTGAACATGGTCACCCAAAGCTGTGCCTTCGCAGAGTCTCAGAACTCAGTGCTGCGCACTCAGATGATGGAGCTGGATAGCAGGCTATCAGCGCTCCGTGAGATAATCTTCTACATGAACAATGGAAACCAATCACCTTCTAATCCTACAATAGCAGCGACTACATACCCATCCACCACTACAATGACTGCAGCAACTACTGGCCATTACGATTATTATGATGTTTTCACTGCAAATGCATGGGGCTCAGGGATGCAAATGATGCAGCAGCCCATAGATCAGTTTCTGTACCAGTGCTAGCTAGCTTCTAGCCAGGAAGTCGATAGAGATAGTGGACCAAATTAAGAAACAGGGCATTGAGATATTGGGCGTGGTGAATGTTGTAGCTAGGTCCATATTAATTATATTGTGTCACCAGTGGTTGTTTATCTTTTGCTTTGATTTGTGATCGGTTGTGGGGGCAGGAAAAAAATGGTGTTGTACCTTTCTGCTGTTGGTGGTAAGAGGCCAAA] [+] EMBL AK100580 [CCCTTCTCCCCTCCTTCCTCGCTAAGGTTCCCTTGCTTCAGCAGAACCCCTGCTGGGCATCCTCCTCTTTCAAAACATCCTTTGCTCTCCAACCACTTCATCTTGATGTTCTTAATCTCCTATAGTCTTTCCCTGTGCGAATTTTTTCTTTGAGAACCAAAGTTTCTTAGGGAAATTCTGTTGAATTTTTCCTTTGAGAACCAAGGTTTCTCGGGGAGACTCTGCTAAAATTTTTATCAACTAGCAAGTTGAAAATACATCATTGTACATATATTTTGTCTGCACATTTATATACAGTAGCAAAACCTGTTTGTAGAGGGAATTATTATAGTGTTTCTGGCTGGTTGATCCATGATAGATTAAACAAGGGGAGGTTGTGACTTGGTAGATGTCACCAATCCTCTCCGAGGTCATCCTCTCCGGATTTATGATCAGCTCGACGCTCCGGCGAGGCTCTCATCTTGTCCTCTCTTTCTCCGTCGTCTTCCTTTACTGGTTCTATGTCTTCTCAGTAACATCCTAGCTACTGTTCTCTTTTATTTGATCTATCCAATACCAGAGAATAGACCACCATATTCTACAAAATACTTCTCATTGGAAATTATAGCTTATAGACAAAACTGAGGGTGACAATACTGTAAGGTATTTTCCTGAGTGTTGCACTAAGGAGGGTACTCAGGACTTTTATTAGGATGACCCTGTCAGGTGGGACCCTGTCAAGCGGGATAACCTCTGGCTCAAGCCATGGGACCCGGAGCTCAGGGTCAGAGGGTGATATCCAGCTGCAGGTCCAAATGGACCTGAAGCGGAAAAGAAGGAAGGAATCAAACCGAGAGTCGGCAAAGAGGTCTAGGTTACGGAAACAACAGCACCTCGATGACCTTACCTCACAGGTATGTTTGAATTCCTTTTTTTTCCCTATCTATATACATATATATATAATATGGTTGCATTTGTTATGTAGATTTTAATATGTTTGTAGTTCCTAGCTTTAATTAGTTTGCTTTATGGATTGAAGCTTGCACTCATGTGCAGGTGAATTTGATACACAAAAGCAAAATCAGATGAAAAAGGACACTTGAGCTGAAGGACTTGCTCAAGGAAACTCCAATAATGCACACGGTGCCCTTTTTTCAAGGGGCCCCAACTAATTGCTTCGTACATAATACTTGAAAAACATTAAACTCGCTATCACTTCCAAAGAAAAAGGTGATAGGCAACTAGTTACCAACAATTGCTCCCAACTGTCAAATCTGGAAATAAGAGCAAGCTCATCGAAATTTCTTGATGCCGATCAAGACCGGATCAAGCTTATGTTTTGCTCCGGAAATGTGAAGGCAAATTTCTATGAACTGTCAGATATCGCAAGAAACCTTCATCCAGAATTTCATTCATTTTTCCAGATTAATCGTACCAACAATAGTAGGAAAAGATTTCAGAATGTTGCTTGAACAAATTAGCAAAATAATACATACCAGTGTAACATAAATAAATAGCACAATTCACCAGATGCACATGGTAGATAGTAATTACTTGCACAATCTAAAATCTGTTCTGTTCATCACAGCTTCCTTCAGCAAATCCAAAAAAAAAATGTTTATGTTAAAAAGGAATGTTATCTTGATTATATAAAATAGGTGAACCAGTTGAAGATGGAGAACCAGCAGCTCACCACAACATTGAACATGGTCACCCAAAGCTGTGCCTTCGCAGAGTCTCAGAACTCAGTGCTGCGCACTCAGATGATGGAGCTGGATAGCAGGCTATCAGCGCTCCGTGAGATAATCTTCTACATGAACAATGGAAACCAATCACCTTCTAATCCTACAATAGCAGCGACTACATACCCATCCACCACTACAATGACTGCAGCAACTACTGGCCATTACGATTATTATGATGTTTTCACTGCAAATGCATGGGGCTCAGGGATGCAAATGATGCAGCAGCCCATAGATCAGTTTCTGTACCAGTGCTAGCTAGCTTCTAGCCAGGAAGTCGATAGAGATAGTGGACCAAATTAAGAAACAGGGCATTGAGATATTGGGCGTGGTGAATGTTGTAGCTAGGTCCATATTAATTATATTGTGTCACCAGTGGTTGTTTATCTTTTGCTTTGATTTGTGATCGGTTGTGGGGGCAGGAAAAAAATGGTGTTGTACCTTTCTGCTGTTGGTGGTAAGAGGCCAAA] consensusID : consensus_1109#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [GGAAGGAATCAAACCGAGAGTCGGCAAAGAGGTCTAGGTTACGGAAACAACAGCACCTCGATGACCTTACCTCACAGGTGAACCAGTTGAAGATGGAGAACCAGCAGCTCACCACAACATTGAACATGGTCACCCAAAGCTGTGCCTTCGCAGAGTCTCAGAACTCAGTGCTGCGCACTCAGATGATGGAGCTGGATAGCAGGCTATCAGCGCTCCGTGAGATAATCTTCTACATGAACAATGGAAACCAATCACCTTCTAATCCTACAATAGCAGCGACTACATACCCATCCACCACTACAATGACTGCAGCAACTACTGGCCATTACGATTATTATGATGTTTTCACTGCAAATGCATGGGGCTCAGGGATGCAAATGATGCAGCAGCCCATAGATCAGTTTCTGTACCAGTGCTAGCTAGCTTCTAGCCAGGAAGTCGATAGAGATAGTGGACCAAATTAAGAAACAGGGCATTGAGATATTGGGCGTGGTGAATGTTGTAGCTAGGTCCATATTAATTATATTGTGTCACCAGTGGTTGTTTATCTTTTGCTTTGATTTGTGATCGGTTGTGGGGGCAGGAAAAAAATGGTGTTGTACCTTTCTGCTGTTGGTGGTAAGAGGCCAAATGGCTATTGGAAAAAAAAAC] [-] EMBL CF326163 [GGAAGGAATCAAACCGAGAGTCGGCAAAGAGGTCTAGGTTACGGAAACAACAGCACCTCGATGACCTTACCTCACAGGTGAACCAGTTGAAGATGGAGAACCAGCAGCTCACCACAACATTGAACATGGTCACCCAAAGCTGTGCCTTCGCAGAGTCTCAGAACTCAGTGCTGCGCACTCAGATGATGGAGCTGGATAGCAGGCTATCAGCGCTCCGTGAGATAATCTTCTACATGAACAATGGAAACCAATCACCTTCTAATCCTACAATAGCAGCGACTACATACCCATCCACCACTACAATGACTGCAGCAACTACTGGCCATTACGATTATTATGATGTTTTCACTGCAAATGCATGGGGCTCAGGGATGCAAATGATGCAGCAGCCCATAGATCAGTTTCTGTACCAGTGCTAGCTAGCTTCTAGCCAGGAAGTCGATAGAGATAGTGGACCAAATTAAGAAACAGGGCATTGAGATATTGGGCGTGGTGAATGTTGTAGCTAGGTCCATATTAATTATATTGTGTCACCAGTGGTTGTTTATCTTTTGCTTTGATTTGTGATCGGTTGTGGGGGCAGGAAAAAAATGGTGTTGTACCTTTCTGCTGTTGGTGGTAAGAGGCCAAATGGCTATTGGAAAAAAAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1109#0 CCCTTCTCCCCTCCTTCCTCGCTAAGGTTCCCTTGCTTCAGCAGAACCCCTGCTGGGCAT 60 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 CCTCCTCTTTCAAAACATCCTTTGCTCTCCAACCACTTCATCTTGATGTTCTTAATCTCC 120 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 TATAGTCTTTCCCTGTGCGAATTTTTTCTTTGAGAACCAAAGTTTCTTAGGGAAATTCTG 180 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 TTGAATTTTTCCTTTGAGAACCAAGGTTTCTCGGGGAGACTCTGCTAAAATTTTTATCAA 240 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 CTAGCAAGTTGAAAATACATCATTGTACATATATTTTGTCTGCACATTTATATACAGTAG 300 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 CAAAACCTGTTTGTAGAGGGAATTATTATAGTGTTTCTGGCTGGTTGATCCATGATAGAT 360 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 TAAACAAGGGGAGGTTGTGACTTGGTAGATGTCACCAATCCTCTCCGAGGTCATCCTCTC 420 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 CGGATTTATGATCAGCTCGACGCTCCGGCGAGGCTCTCATCTTGTCCTCTCTTTCTCCGT 480 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 CGTCTTCCTTTACTGGTTCTATGTCTTCTCAGTAACATCCTAGCTACTGTTCTCTTTTAT 540 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 TTGATCTATCCAATACCAGAGAATAGACCACCATATTCTACAAAATACTTCTCATTGGAA 600 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 ATTATAGCTTATAGACAAAACTGAGGGTGACAATACTGTAAGGTATTTTCCTGAGTGTTG 660 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 CACTAAGGAGGGTACTCAGGACTTTTATTAGGATGACCCTGTCAGGTGGGACCCTGTCAA 720 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 GCGGGATAACCTCTGGCTCAAGCCATGGGACCCGGAGCTCAGGGTCAGAGGGTGATATCC 780 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 AGCTGCAGGTCCAAATGGACCTGAAGCGGAAAAGAAGGAAGGAATCAAACCGAGAGTCGG 840 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 CAAAGAGGTCTAGGTTACGGAAACAACAGCACCTCGATGACCTTACCTCACAGGTATGTT 900 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 TGAATTCCTTTTTTTTCCCTATCTATATACATATATATATAATATGGTTGCATTTGTTAT 960 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 GTAGATTTTAATATGTTTGTAGTTCCTAGCTTTAATTAGTTTGCTTTATGGATTGAAGCT 1020 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 TGCACTCATGTGCAGGTGAATTTGATACACAAAAGCAAAATCAGATGAAAAAGGACACTT 1080 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 GAGCTGAAGGACTTGCTCAAGGAAACTCCAATAATGCACACGGTGCCCTTTTTTCAAGGG 1140 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 GCCCCAACTAATTGCTTCGTACATAATACTTGAAAAACATTAAACTCGCTATCACTTCCA 1200 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 AAGAAAAAGGTGATAGGCAACTAGTTACCAACAATTGCTCCCAACTGTCAAATCTGGAAA 1260 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 TAAGAGCAAGCTCATCGAAATTTCTTGATGCCGATCAAGACCGGATCAAGCTTATGTTTT 1320 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 GCTCCGGAAATGTGAAGGCAAATTTCTATGAACTGTCAGATATCGCAAGAAACCTTCATC 1380 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 CAGAATTTCATTCATTTTTCCAGATTAATCGTACCAACAATAGTAGGAAAAGATTTCAGA 1440 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 ATGTTGCTTGAACAAATTAGCAAAATAATACATACCAGTGTAACATAAATAAATAGCACA 1500 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 ATTCACCAGATGCACATGGTAGATAGTAATTACTTGCACAATCTAAAATCTGTTCTGTTC 1560 consensus_1109#1 ------------------------------------------------------------ consensus_1109#0 ATCACAGCTTCCTTCAGCAAATCCAAAAAAAAAATGTTTATGTTA-AAAAGGAATGTTAT 1619 consensus_1109#1 -GGAAGGAATCAAACCGAGAGTC---GGCAAAGAGGTCTAGGTTACGGAAACAACAGCAC 56 * * ** * * * ** *** * ** ** **** ** ** * consensus_1109#0 CTTGATTATATAAA---ATAGGTGAACCAGTTGAAGATGGAGAACCAGCAGCTCACCACA 1676 consensus_1109#1 CTCGATGACCTTACCTCACAGGTGAACCAGTTGAAGATGGAGAACCAGCAGCTCACCACA 116 ** *** * * * * ***************************************** consensus_1109#0 ACATTGAACATGGTCACCCAAAGCTGTGCCTTCGCAGAGTCTCAGAACTCAGTGCTGCGC 1736 consensus_1109#1 ACATTGAACATGGTCACCCAAAGCTGTGCCTTCGCAGAGTCTCAGAACTCAGTGCTGCGC 176 ************************************************************ consensus_1109#0 ACTCAGATGATGGAGCTGGATAGCAGGCTATCAGCGCTCCGTGAGATAATCTTCTACATG 1796 consensus_1109#1 ACTCAGATGATGGAGCTGGATAGCAGGCTATCAGCGCTCCGTGAGATAATCTTCTACATG 236 ************************************************************ consensus_1109#0 AACAATGGAAACCAATCACCTTCTAATCCTACAATAGCAGCGACTACATACCCATCCACC 1856 consensus_1109#1 AACAATGGAAACCAATCACCTTCTAATCCTACAATAGCAGCGACTACATACCCATCCACC 296 ************************************************************ consensus_1109#0 ACTACAATGACTGCAGCAACTACTGGCCATTACGATTATTATGATGTTTTCACTGCAAAT 1916 consensus_1109#1 ACTACAATGACTGCAGCAACTACTGGCCATTACGATTATTATGATGTTTTCACTGCAAAT 356 ************************************************************ consensus_1109#0 GCATGGGGCTCAGGGATGCAAATGATGCAGCAGCCCATAGATCAGTTTCTGTACCAGTGC 1976 consensus_1109#1 GCATGGGGCTCAGGGATGCAAATGATGCAGCAGCCCATAGATCAGTTTCTGTACCAGTGC 416 ************************************************************ consensus_1109#0 TAGCTAGCTTCTAGCCAGGAAGTCGATAGAGATAGTGGACCAAATTAAGAAACAGGGCAT 2036 consensus_1109#1 TAGCTAGCTTCTAGCCAGGAAGTCGATAGAGATAGTGGACCAAATTAAGAAACAGGGCAT 476 ************************************************************ consensus_1109#0 TGAGATATTGGGCGTGGTGAATGTTGTAGCTAGGTCCATATTAATTATATTGTGTCACCA 2096 consensus_1109#1 TGAGATATTGGGCGTGGTGAATGTTGTAGCTAGGTCCATATTAATTATATTGTGTCACCA 536 ************************************************************ consensus_1109#0 GTGGTTGTTTATCTTTTGCTTTGATTTGTGATCGGTTGTGGGGGCAGGAAAAAAATGGTG 2156 consensus_1109#1 GTGGTTGTTTATCTTTTGCTTTGATTTGTGATCGGTTGTGGGGGCAGGAAAAAAATGGTG 596 ************************************************************ consensus_1109#0 TTGTACCTTTCTGCTGTTGGTGGTAAGAGGCCAAA-------------------- 2191 consensus_1109#1 TTGTACCTTTCTGCTGTTGGTGGTAAGAGGCCAAATGGCTATTGGAAAAAAAAAC 651 *********************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||