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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11094#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1993 fasta sequence
[GAATGCCTCTGCACCACCTCTCCATTTATGGAGCCATCCTGATTGGACAAGGAAGCACAGGAAAGTAGCTGAGGAGCATAACCACACTAGCATAGGGAGGATCGCTTCCCATGTTGAAGAAGATAATCTATCAGATAACCTCCCTATGATGAAAGAAACTGAATCTTATGGTATACATAACTCTAGATCAGGGAAAGAGGAGAATGCAGGACAAACTTCATGCAATCTCAAAGGGACCAATCTATCAGATCTCCCTGTGAGGAGACAGGCTGAAGCTGGCAACAAACGAAATGTTGGACCAGGCAAAGAGAAAGAGACTACAGAGAAGACATCATGCGATGTCAGAGAGGTTATTCTATCAGATGATCGTCCTGTGAAGACACAAGCTGGATATGGACAAGTGAAAGCTAAAGAGTACCATAGATCCGATAGCCTTCCTGTGAAGAAACAAGCTGAGACTAATTACCAGCAAATCTCTCAATCAGGAAAGGAGAAAGAGCATAGCATGGATGAAAGCAATAGCACTCATAACAGGAGCAGGAAAAGAACCCCTGATCAGGTTGATGGGAGCCTCCCTCCAGAAAAACAAGTGGAAGTTGCTTATGAGGAAAGAATGGCTATTCCTATCAAGAAGAGTACTCACCAAGAAAAACAACTAGATGCAGGAGACAGATTAAATGCTCATAGAGGATCAGAGATTATGGGTGCCAAATTCACAGAACAAGCGAACTCTGACATGAGCATGTCATCCTCTGACTCCAGTAATGCTCAAAACAAATCCAGAAGCGGTTCCCCTTTTATTCCAATTGGACACCCTGCTGATAAGAGTACAGGTCGAGATAGTTTTATTAGTTATCCTCCAAAAGAACATCTTGTCTCTAAGCAGGCTACTTATCAGGGCAGATATTTAGCAAGCAATAATGAATGCAACAATGCATTTGAAGGGAAGATTGATCCTCCAATTCATACCAATATCGATGATATCTCCAGGAAGTTCAGCCCTGGTACTGACTTCGAAGTGAACAGGCAGCATTTCACTGCCCCAACTGGCAACGTGTACAGTTTGCAATCTCTAAGAGATAGTGACAGGTTTTATAGGACGCAGCGCTCAGAAGACAGGAACACTAATTCTCTTGAGAGCACAACTGGTGATGCACCTTTGCATGGACACCCCACAAGGTACAGTCGACAAGTTGGTGATGATAATTATCTACAAACCAGTAGGGTCCCATCAACATTGCATGAGCAGGCACATCCAAGAACGCATGTTGGACATGCTGATGGTTACTTACAGACAAGTCAATACTCCCTTGGATCTTCAGGTGCTACATATGGTCAGCAAACATCTTCATATGGACTCCCCGGTGCGAGTACACCATATAGCATTATGGACAAGTATGCTCCTGGA-TTCTTGGCTCCAAGTGCACAAAGAAGCTCAGTTATGGACATGTACGCCCTAGGTCCAAGTGCATCTGG-AAGCTCGGTTATGGACAAGTATGCTCCACCTCTAGAGGATACAAACTACAGTGCACGAGGGGTTCCACAATACCCGTACCGACAGCTAGGCTCTTCTGGTGGGGGTTGGCC-TCGTAGCTGACCACACTTCAGTTTACCTGATCACCGTTTTGAATGTCATTGACGGCTGATG-CAGCGCTTGC-TTTTTTTTTTTCCTT-CTGAGAGATCTGCTGCCATGTTTTTTCTGCGTTCCATTTGATGAATACTAAAGT-GGATCACTTGTACAGGAATAGAAATCTCACCCTCCAAGAAAATGAGCAAGATCCTAGC-TTACTAATGTAGTGTACACTGTGACCC-TAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTTGGGCAAGTGGGTAATCCATATGGTTTCGAATTTTTGTGATATTTCAGCTCTAACAAAAATGCCTGATTTTTTCCCCCTGAAGTTTCGTGTATAGGGAGCGACTTTGGCTGAGTTTGCAGCATTTTGAATGGAATGTTAACAG]
[+] EMBL AK064570 [GAATGCCTCTGCACCACCTCTCCATTTATGGAGCCATCCTGATTGGACAAGGAAGCACAGGAAAGTAGCTGAGGAGCATAACCACACTAGCATAGGGAGGATCGCTTCCCATGTTGAAGAAGATAATCTATCAGATAACCTCCCTATGATGAAAGAAACTGAATCTTATGGTATACATAACTCTAGATCAGGGAAAGAGGAGAATGCAGGACAAACTTCATGCAATCTCAAAGGGACCAATCTATCAGATCTCCCTGTGAGGAGACAGGCTGAAGCTGGCAACAAACGAAATGTTGGACCAGGCAAAGAGAAAGAGACTACAGAGAAGACATCATGCGATGTCAGAGAGGTTATTCTATCAGATGATCGTCCTGTGAAGACACAAGCTGGATATGGACAAGTGAAAGCTAAAGAGTACCATAGATCCGATAGCCTTCCTGTGAAGAAACAAGCTGAGACTAATTACCAGCAAATCTCTCAATCAGGAAAGGAGAAAGAGCATAGCATGGATGAAAGCAATAGCACTCATAACAGGAGCAGGAAAAGAACCCCTGATCAGGTTGATGGGAGCCTCCCTCCAGAAAAACAAGTGGAAGTTGCTTATGAGGAAAGAATGGCTATTCCTATCAAGAAGAGTACTCACCAAGAAAAACAACTAGATGCAGGAGACAGATTAAATGCTCATAGAGGATCAGAGATTATGGGTGCCAAATTCACAGAACAAGCGAACTCTGACATGAGCATGTCATCCTCTGACTCCAGTAATGCTCAAAACAAATCCAGAAGCGGTTCCCCTTTTATTCCAATTGGACACCCTGCTGATAAGAGTACAGGTCGAGATAGTTTTATTAGTTATCCTCCAAAAGAACATCTTGTCTCTAAGCAGGCTACTTATCAGGGCAGATATTTAGCAAGCAATAATGAATGCAACAATGCATTTGAAGGGAAGATTGATCCTCCAATTCATACCAATATCGATGATATCTCCAGGAAGTTCAGCCCTGGTACTGACTTCGAAGTGAACAGGCAGCATTTCACTGCCCCAACTGGCAACGTGTACAGTTTGCAATCTCTAAGAGATAGTGACAGGTTTTATAGGACGCAGCGCTCAGAAGACAGGAACACTAATTCTCTTGAGAGCACAACTGGTGATGCACCTTTGCATGGACACCCCACAAGGTACAGTCGACAAGTTGGTGATGATAATTATCTACAAACCAGTAGGGTCCCATCAACATTGCATGAGCAGGCACATCCAAGAACGCATGTTGGACATGCTGATGGTTACTTACAGACAAGTCAATACTCCCTTGGATCTTCAGGTGCTACATATGGTCAGCAAACATCTTCATATGGACTCCCCGGTGCGAGTACACCATATAGCATTATGGACAAGTATGCTCCTGGA TTCTTGGCTCCAAGTGCACAAAGAAGCTCAGTTATGGACATGTACGCCCTGGTTCCAAGTGCATCTGG AAGCTCGGTTATGGACAAGTATGCTCCACCTTTAGAGGATACAAACTACAGTGCACGAGGGGTTCCACAATACCCGTACCGACAGCTAGGCTCTTCTGGTGGGGGTTGGCC TCGTAGCTGACCACACTTCAGTTTACCTGATCACCGTTTTGAATGTCATTGACGGCTGATG CAGCGCTTGC TTTTTTTTTTCCTT CTGAGAGATCTGCTGCCATGTTATTTCTGCGTTCCATTTGATGAATACTAAAGT GGATCACTTGTACAGGAATAGAAATCTCACCCTCCAAGAAAATGAGCAAGATCCTAGC TTACTAATGTAGTGTACACTGTGACCC TAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTTGGGCAAGTGGGTAATCCATATGGTTTCGAATTTTTGTGATATTTCAGCTCTAACAATCCTGCCTGATTTTTTCCCCCTGAAGTTTCGTGTATAGGGAGCGACTTTGGCTGAGTTTGCAGCATTTTGAATGGAATGTTAACAG]
[+] EMBL D42307 [ TTAAATCCT ATAGAGGATCAGAGATTATGGGTGCCAAATTCACAGAACAAGCGAACTCTGACATGAGCATGTCATCCTCTGGCTCCAGTAATGCTCAAAACAAATCCAGAGGGGGT ]
[+] EMBL BE040149 [ TTGTCTCTAAGCAGGCTACTTATCAGGGCAGATATTTAGCAAGCAATAATGAATGCAACAATGCATTTGAAGGGAAGATTGATCCTCCATTTCATACCAATATCGATGATATCTCCAGGAAGTTCAGCCCTGGTACTGACTTCGAAGTGAACAGGCAGCATTTCACTGCCCCAACTGGCAACGTGTACAGTTTGCAATCTCTAAGAGATAGTGACAGGTTTTATAGGACGCAGCGCTCAGAAGAGAGGAACACTAATTCTCTTGAGAGCACAACTGGTGATGCACCTTTGCATGGACACCCCACAAGGTACAGTCGACAAGTTGGTGATGATAATTATCTACAAACCAGTAGGGTCCCATCAACATTGCATGAGCAGGCACATCTAAGAACGCATGTTGGACATGCTGATGGTTACTTACAGACAAGTCAATACTCCCTTGGATCTTCAGGTGCTACATATGGTCAGCAAACATCTTCATATGGACTCCCCGGTACGAGTACACCATATAGCATTATGGACAAGTATGCTCCTGGA TTCTTGGCTCCAAGTGCACAAAGAAGCTCAGTTATGGACATGTACGCCCTANGTCCAAGTGCATCTGGAAAGCTC GTTATGGACAAGTATGCTCCACCTCTAGAGGATACAAACTACAGTGCACGAAGGGTTTCACAATACCCGTACCGACAGCTAGGCTCTTCTTGTTGGGGGTGGCCTTCG AGCTGACCACAACTCAGTTTAACTGATCACCGTTTTGAATGTCATTGACGGCTGATGCCNNCGCTTGC TTTTTTTTTTTTCTTCCTGAAAAACCTGCTGCC TGTTTTTTTCGCGTCCCAATGGATGAAAACTAAAATGGGATCACTGGAACGGGAATA AAATCTTAACCTTCAAGAAAATGAACCAGAACCTAGCTTTCCTAAGGAGGTG ACACTGGGACCCTTACATTG CGAATGGCCAaaat ]
[+] EMBL BI811988 [ GCTCCTGGATTTCTTGGCTCCAAGTGCACAAAGAAGCTCAGTTATGGACATGTAC CCCTAGGTCCAAGTGCATCTGG AAGCTCGGTTATGGACAAGTATGCTCCACCTCTAGAGGATAC ACTACAGTGCACGAGGGGTTCCAC ATACCCGTACCGACAGCTAGGCTCTTCTGGTGGGGGTT GCC TCGTA CTGACCACACTTCAGTTTACCTGATCACCGTTTTGAATGTCATTGACGGCTGATG CAGCGCTTGCTTTTTTTTTTTTCCTT CTGAGAGATCTGCTGCCATGTTTTTTCTGCGTTCCATTTGATGAATACTAAAGT GGATCACTTGTACAGGAATAAAAATCTCACCCTCCAAGAAAATGAGCAAGATCCTAGC TTACTAATGTAGTGTACACTGTGACCC TAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTTGGGCTAGTGGGTAATCCATATGGTTTCGAATTTTTGTGATAaaaaaa ]
[+] EMBL CF313889 [ TCCAAGAAAATGAGCAAGATCCTAGC TTACTAATGTAGTGTACACTGTGACCC TAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTCGGGCAAGTGGGTAATCCATATGGTTTCGAATTTTTGTGATATTTCAGCTCTAACAAAAA ]
[-] EMBL CF313890 [ CCAAGAAAATGAGCAAGATCCTAGC TTACTAATGTAGTGTACCCTGTGACCC TAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTCGGGCAAGTGGGTAATCCATATGGTTTCGAATTTTTGTGATATTTCAGCTTTACCAAAAAa ]
consensusID : consensus_11094#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 236 fasta sequence
[TCCTTCTGAGAGATCTGCTGCCATGTTTTTTTTGCGCTCCATTTGATGAATACTAAAGTGGATCCCTTGTACAGGAATAAAAATCTCCCCCTCCAAGAAAATGAGCAAGATCCTAGCTTACTAATGTAGTGTACCCTGTGACCCTAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTTGGGCTAGTGGGTAATCCATATGGTTTCGAATTTTTGTGATAAAAAAAAAAAAA]
[-] EMBL CA761415 [TCCTTCTGAGAGATCTGCTGCCATGTTTTTTTTGCGCTCCATTTGATGAATACTAAAGTGGATCCCTTGTACAGGAATAAAAATCTCCCCCTCCAAGAAAATGAGCAAGATCCTAGCTTACTAATGTAGTGTACCCTGTGACCCTAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTTGGGCTAGTGGGTAATCCATATGGTTTCGAATTTTTGTGATAAAAAAAAAAAAA]
[-] EMBL CA761455 [TCCTTCTGAGAGATCTGCTGCCATGTTTTTTTTGCGCTCCATTTGATGAATACTAAAGTGGATCCCTTGTACAGGAATAAAAATCTCCCCCTCCAAGAAAATGAGCAAGATCCTAGCTTACTAATGTAGTGTACCCTGTGACCCTAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTTGGGCTAGTGGGTAATCCATATGGTTTCGAATTTTTGTGATAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11094#0 GAATGCCTCTGCACCACCTCTCCATTTATGGAGCCATCCTGATTGGACAAGGAAGCACAG 60
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 GAAAGTAGCTGAGGAGCATAACCACACTAGCATAGGGAGGATCGCTTCCCATGTTGAAGA 120
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 AGATAATCTATCAGATAACCTCCCTATGATGAAAGAAACTGAATCTTATGGTATACATAA 180
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 CTCTAGATCAGGGAAAGAGGAGAATGCAGGACAAACTTCATGCAATCTCAAAGGGACCAA 240
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 TCTATCAGATCTCCCTGTGAGGAGACAGGCTGAAGCTGGCAACAAACGAAATGTTGGACC 300
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 AGGCAAAGAGAAAGAGACTACAGAGAAGACATCATGCGATGTCAGAGAGGTTATTCTATC 360
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 AGATGATCGTCCTGTGAAGACACAAGCTGGATATGGACAAGTGAAAGCTAAAGAGTACCA 420
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 TAGATCCGATAGCCTTCCTGTGAAGAAACAAGCTGAGACTAATTACCAGCAAATCTCTCA 480
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 ATCAGGAAAGGAGAAAGAGCATAGCATGGATGAAAGCAATAGCACTCATAACAGGAGCAG 540
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 GAAAAGAACCCCTGATCAGGTTGATGGGAGCCTCCCTCCAGAAAAACAAGTGGAAGTTGC 600
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 TTATGAGGAAAGAATGGCTATTCCTATCAAGAAGAGTACTCACCAAGAAAAACAACTAGA 660
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 TGCAGGAGACAGATTAAATGCTCATAGAGGATCAGAGATTATGGGTGCCAAATTCACAGA 720
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 ACAAGCGAACTCTGACATGAGCATGTCATCCTCTGACTCCAGTAATGCTCAAAACAAATC 780
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 CAGAAGCGGTTCCCCTTTTATTCCAATTGGACACCCTGCTGATAAGAGTACAGGTCGAGA 840
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 TAGTTTTATTAGTTATCCTCCAAAAGAACATCTTGTCTCTAAGCAGGCTACTTATCAGGG 900
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 CAGATATTTAGCAAGCAATAATGAATGCAACAATGCATTTGAAGGGAAGATTGATCCTCC 960
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 AATTCATACCAATATCGATGATATCTCCAGGAAGTTCAGCCCTGGTACTGACTTCGAAGT 1020
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 GAACAGGCAGCATTTCACTGCCCCAACTGGCAACGTGTACAGTTTGCAATCTCTAAGAGA 1080
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 TAGTGACAGGTTTTATAGGACGCAGCGCTCAGAAGACAGGAACACTAATTCTCTTGAGAG 1140
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 CACAACTGGTGATGCACCTTTGCATGGACACCCCACAAGGTACAGTCGACAAGTTGGTGA 1200
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 TGATAATTATCTACAAACCAGTAGGGTCCCATCAACATTGCATGAGCAGGCACATCCAAG 1260
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 AACGCATGTTGGACATGCTGATGGTTACTTACAGACAAGTCAATACTCCCTTGGATCTTC 1320
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 AGGTGCTACATATGGTCAGCAAACATCTTCATATGGACTCCCCGGTGCGAGTACACCATA 1380
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 TAGCATTATGGACAAGTATGCTCCTGGATTCTTGGCTCCAAGTGCACAAAGAAGCTCAGT 1440
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 TATGGACATGTACGCCCTAGGTCCAAGTGCATCTGGAAGCTCGGTTATGGACAAGTATGC 1500
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 TCCACCTCTAGAGGATACAAACTACAGTGCACGAGGGGTTCCACAATACCCGTACCGACA 1560
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 GCTAGGCTCTTCTGGTGGGGGTTGGCCTCGTAGCTGACCACACTTCAGTTTACCTGATCA 1620
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 CCGTTTTGAATGTCATTGACGGCTGATGCAGCGCTTGCTTTTTTTTTTTCCTTCTGAGAG 1680
consensus_11094#1 ------------------------------------------------TCCTTCTGAGAG 12
************
consensus_11094#0 ATCTGCTGCCATGTTTTTTCTGCGTTCCATTTGATGAATACTAAAGTGGATCACTTGTAC 1740
consensus_11094#1 ATCTGCTGCCATGTTTTTTTTGCGCTCCATTTGATGAATACTAAAGTGGATCCCTTGTAC 72
******************* **** *************************** *******
consensus_11094#0 AGGAATAGAAATCTCACCCTCCAAGAAAATGAGCAAGATCCTAGCTTACTAATGTAGTGT 1800
consensus_11094#1 AGGAATAAAAATCTCCCCCTCCAAGAAAATGAGCAAGATCCTAGCTTACTAATGTAGTGT 132
******* ******* ********************************************
consensus_11094#0 ACACTGTGACCCTAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTTGGGCAAGTG 1860
consensus_11094#1 ACCCTGTGACCCTAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTTGGGCTAGTG 192
** **************************************************** ****
consensus_11094#0 GGTAATCCATATGGTTTCGAATTTTTGTGATATTTCAGCTCTAACAAAAATGCCTGATTT 1920
consensus_11094#1 GGTAATCCATATGGTTTCGAATTTTTGTGATAAAAAA-----AAAAAAA----------- 236
******************************** * ** ****
consensus_11094#0 TTTCCCCCTGAAGTTTCGTGTATAGGGAGCGACTTTGGCTGAGTTTGCAGCATTTTGAAT 1980
consensus_11094#1 ------------------------------------------------------------
consensus_11094#0 GGAATGTTAACAG 1993
consensus_11094#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||