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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11095#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1168 fasta sequence
[AGAGACTTGTTAATGATTGTAATATTCCTACTACTAGCTAGTTAAGTATAAGCATGATACATTGCACATTATACTTCATATATAGTATTATAATTAGCTTATCTTGTCGTGTGTTTATGCCTTGATGCAAGCTATAGCTCCTGGCTCTGAAACAATAGTTTTAAGAAATATATAATTTATGGCGTGCAACTCCTATTCTTAGAAGTGTCCACCTGCCACCGCCATGGCACGTGCGTACGTGAAACTGACGTAATATTGAGCTGGCAGAAGTAGCAGAGCAACTAGATAGACCAGCAGCACCCACATGGATATTGGTGGGCAACGCATGCAGCTTAATTCAACGTGCATGATGCCACTTGTGATATCTAGCTACTTGCTCAACGTCCAAAAGATGCAAAACTTGTTGTATGATATGATGCTGCCATGATTGGCTTATCATTTGATGTAATAGTCCCCGTTGTTTATCTTTTCTAATGCCATGTGTATATATGATTCTGTCAGTCTGGAAGGATGTATTACCTGAACAGGAAGACCTTGAAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGCGTGAACCTGGAGCTCAACATCTCGACTACCCAGCCAACCGTCGTCGTCGTCCCCATCATTATCGATGGAGGAAGCACCGGAGCTGCTGCTACTCCAGTTGCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTCAGCTCTGGACCTGGAGGCAACATGGTGGCCGTGCCTTGTGTCAATTGCCACCTCCTCGTCATGCTCTGCAAGTCCTCCCCATCCTGTCCCAACTGCAAGTTCGCGCAGCCGTTGGCGCCACCGCCGCCGGCCCTGCCGCACCGCAAGCTCGACGCCGTCAAGCCGCTGGAGACCTTGAGCCTTCTCCATTAGGGCAGTCTAGCTAGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCCCCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTAGTACTGTTTGAGGGAAGGACTATTGATCACTATGTTAATCCAGGGACTTTGACATAGAATGGTGAGGGTGAGGAGGAGGCAATATAAATGTATTATTATTAATCAATCAATTAGTTAATAGTAATGGTGATAGATGTGCTAAAAAAAAAAAAA]
[+] EMBL AK108229 [AGAGACTTGTTAATGATTGTAATATTCCTACTACTAGCTAGTTAAGTATAAGCATGATACATTGCACATTATACTTCATATATAGTATTATAATTAGCTTATCTTGTCGTGTGTTTATGCCTTGATGCAAGCTATAGCTCCTGGCTCTGAAACAATAGTTTTAAGAAATATATAATTTATGGCGTGCAACTCCTATTCTTAGAAGTGTCCACCTGCCACCGCCATGGCACGTGCGTACGTGAAACTGACGTAATATTGAGCTGGCAGAAGTAGCAGAGCAACTAGATAGACCAGCAGCACCCACATGGATATTGGTGGGCAACGCATGCAGCTTAATTCAACGTGCATGATGCCACTTGTGATATCTAGCTACTTGCTCAACGTCCAAAAGATGCAAAACTTGTTGTATGATATGATGCTGCCATGATTGGCTTATCATTTGATGTAATAGTCCCCGTTGTTTATCTTTTCTAATGCCATGTGTATATATGATTCTGTCAGTCTGGAAGGATGTATTACCTGAACAGGAAGACCTTGAAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGCGTGAACCTGGAGCTCAACATCTCGACTACCCAGCCAACCGTCGTCGTCGTCCCCATCATTATCGATGGAGGAAGCACCGGAGCTGCTGCTACTCCAGTTGCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTCAGCTCTGGACCTGGAGGCAACATGGTGGCCGTGCCTTGTGTCAATTGCCACCTCCTCGTCATGCTCTGCAAGTCCTCCCCATCCTGTCCCAACTGCAAGTTCGCGCAGCCGTTGGCGCCACCGCCGCCGGCCCTGCCGCACCGCAAGCTCGACGCCGTCAAGCCGCTGGAGACCTTGAGCCTTCTCCATTAGGGCAGTCTAGCTAGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCCCCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTAGTACTGTTTGAGGGAAGGACTATTGATCACTATGTTAATCCAGGGACTTTGACATAGAATGGTGAGGGTGAGGAGGAGGCAATATAAATGTATTATTATTAATCAATCAATT ]
[-] EMBL CF335570 [ GGAGGAAGCACCGGAGCTGCTGCTACTCCAGTTGCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTCAGCTCTGGACCTGGAGGCAACATGGTGGCCGTGCCTTGTGTCAATTGCCACCTCCTCGTCATGCTCTGCAAGTCCTCCCCATCCTGTCCCAACTGCAAGTTCGTGCAGCCGTTGGCGCCACCGCCGCCGGCCCTGCCGCACCGCAAGCTCGACGCCGTCAAGCCGCTGGAGACCTTGAGCCTTCTCCATTAGGGCAGTCTAGCTAGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCCCCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTAGTACTGTTTGAGGGAAGGACTATTGATCACTATGTTAATCCAGGGACTTTGACATAGAATGGTGAGGGTGAGGAGGAGGCAATATAAATGTATTATTATTAATCAATCAATTAGTTAATAGTAATGGTGATAGATGTGCTAAAAAAAAAAAAA]
consensusID : consensus_11095#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1001 fasta sequence
[GGAGTAGAAAACTTGTGTGTGTATATAAGAGCAGGAGCTAGCATCATCAGCCAAGATGACCACTGAATTCCTTAGAGTGGAGAAGTACCTGAGTGTGAAGAGGATGGAGCTGCAGCCGGAGCTCTCACTAGGGCCGACGTGGCCGGCGCCAGGCTTCGTCTCCTCCACCACCAAGAGCACCAAGAGCTCATCGTCGGAGTCAGACGGCAGCTCCAGGAAGAAGAGGAAGCACTTCACCTGGGAGGAGCCCGTGTCGCACGCCAACCTGGAGCTCCAGCTCAATGACCCCCTGCCCCTCGACTGGGAGCAGTGCCTTGACCTGCAATCTGGAAGGATGTATTACCTGAACAGGAAGACCTTGAAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGC-GT-GAACCTGGAGCTCAACATCTCGAC-TACCCAGCCAACCGTC-GTCG-TCGTCCCCACCATTATCGA-TGGAGGAAGCACCGG-AGCTGCTGCT-ACT-CCAGTT--GCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTCAGCTCTGGACCTGGAGGCAACATN-GTGGCCGTGCCTTGTGTCAATTGCCACCTC-CTCGTCATGCTCTGCAAGTCCTCCCCATCCCTGTCCCAACTGCAAGTTCGTGCAGCCGTTGGCGCCACCGCCNGCCGGCCCTGCCGCACCGCAAGCTNGACGCCGTCAAGCCGCTGGAGACCTTGAGCCTTCTCCATTAGGGCAGTCTAGCTAGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCCCCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTAGTACTGTTTGAGGGAAGGACTATTGATCACTATGTTAATCCAGGGACTTTGACATAGAATGGTGAGGGTGAGGAGGAGGCAATATAAATGTATTATTATTAATCAATCAATTAGTTAATAGTAATGGTGATAGATGTGCTAGCTAGTTACTAGAAAAAAA]
[+] EMBL CF335569 [GGAGTAGAAAACTTGTGTGTGTATATAAGAGCAGGAGCTAGCATCATCAGCCAAGATGACCACTGAATTCCTTAGAGTGGAGAAGTACCTGAGTGTGAAGAGGATGGAGCTGCAGCCGGAGCTCTCACTAGGGCCGACGTGGCCGGCGCCAGGCTTCGTCTCCTCCACCACCAAGAGCACCAAGAGCTCATCGTCGGAGTCAGACGGCAGCTCCAGGAAGAAGAGGAAGCACTTCACCTGGGAGGAGCCCGTGTCGCACGCCAACCTGGAGCTCCAGCTCAATGACCCCCTGCCCCTCGACTGGGAGCAGTGCCTTGACCTGCAATCTGGAAGGATGTATTACCTGAACAGGAAGACCTTGAAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGC GT GAACCTGGAGCTCAACATCTCGAC TACCCAGCCAACCGTC GTCG TCGTCCCCACCATTATCGA TGGAGGAAGCACCGG AGCTGCTGCT ACT CCAGTT GCTGTTG ]
[+] EMBL CF333400 [ AATTCCTTAGAGTGGAGAAGTACCTGAGTGTGAAGAGGATGGAGCTGCAGCCGGAGCTCTCACTAGGGCCGACGTGGCCGGCGCCAGGCTTCGTCTCCTCCACCACCAAGAGCACCAAGAGCTCATCGTCGGAGTCAGACGGCAGCTCCAGGAAGAAGAGGAAGCACTTCACCTGGGAGGAGCCCGTGTCGCACGCCAACCTGGAGCTCCAGCTCAATGACCCCCTGCCCCTCGACTGGGAGCAGTGCCTTGACCTGCAATCTGGAAGGATGTATTACCTGAACAGGAAGACCTTGAAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGC GT GAACCTGGAGCTCAACATCTCGAC TACCCAGCCAACCGTCNGTCG TCGTCCCCACCATTATCGA TGGAGGAAGCACCGG AGCTGCTGCT ACT CCAGTT GCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTCAGCTCTGGACCTGGAGGCAACATNGGTGGCCGTGCCTTGTGTCAATTGCCACCTC CTCGTCATGCTCTGCAAGTCCTCC ]
[+] EMBL C74226 [ AGAGTGGAGAAGTACCTGAGTGTGAAGAGGATGGAGCTGCAGCCGGAGCTCTCACTAGGGCCGACGTGGCCGGCGCCAGGCTTCGTCTCCTCCACCACCAAGAGCACCAAGAGCTCATCGTCGGAGTCAGACGGCAGCTCCAGGAAGAAGAGGAAGCACTTCACCTGGGAGGAGCCCGTGTCGCACGCCAACCTGGAGCTCCAGCTCAATGACCCCCTGCCCCTCGACTGGGAGCAGTGCCTTGACCTGCAATCTGGAAGGATGTATTACCTGAACAGGAAGACCTTGAAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGCTNTGGAACCTGGAGCTCAACATCTCGACTTACCCAGCCAANCGTC GTCGTTGGTCCCCACCATTATCGATTGGAGGAAGCACCGG AGCTGCTGCTAATT CCAGTTTGGCTGTTG ]
[+] EMBL AU031288 [ GCCCGTGTCGCACGCCAACCTGGAGCTCCAGCTCAATGACCCCCTGCCCCTCGACTGGGAGCAGTGCCTTGACCTGCAATCTGGAAGGATGTATTACCTGAACAGGAAGACCTTGAAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGC GT GAACCTGGAGCTCAACATCTCGAC TACCCAGCCAACCGTC GTCG TCGTCCCCACCATTATCGA TGGAGGAAGCACCGG AGCTGCTGCT ACT CCAGTT GCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTCANCTCTGGACCTNGAGGCAACATN GTGGCCGTGCCTTGTG ]
[-] EMBL CF333401 [ GGAGGAAGCACCGGAAGCTGCTGCT ACTCCCAGTT GCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTCAGCTCTGGACCTGGAGGCAACATG GTGGCCGTGCCTTGTGTCAATTGCCACCTCNCTCGTCATGCTCTGCAAGTCCTCCCCATCCCTGTCCCAACTGCAAGTTCGTGCAGCCGTTGGCGCCACCGCCNGCCGGCCCTGCCGCACCGCAAGCTNGACGCCGTCAAGCCGCTGGAGACCTTGAGCCTTCTCCATTAGGGCAGTCTAGCTAGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCCCCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTAGTACTGTTTGAGGGAAGGACTATTGATCACTATGTTAATCCAGGGACTTTGACATAGAATGGTGAGGGTGAGGAGGAGGCAATATAAATGTATTATTATTAATCAATCAATTAGTTAATAGTAATGGTGATAGATGTGCTAGCTAGTTACTAGAAAAAAA]
consensusID : consensus_11095#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence
[TTGAGCCTTCTCCATTAGGGCAGTCTAGCTNGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCCCCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTAGTACTGTTTGAGGGAAGGANTNTTGATCACTATGTTAATCCNGGGACTTTGACATAGAATGGTGAGGGTGAGGAGGNGGCNATNTAAATGTNTTNTTATTANTNAAAANAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU031287 [TTGAGCCTTCTCCATTAGGGCAGTCTAGCTNGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCCCCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTAGTACTGTTTGAGGGAAGGANTNTTGATCACTATGTTAATCCNGGGACTTTGACATAGAATGGTGAGGGTGAGGAGGNGGCNATNTAAATGTNTTNTTATTANTNAAAANAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11095#0 AGAGACTTGTTAATGATTGTAATATTCCTACTACTAGCTAGTTAAGTATAAGCATGATAC 60
consensus_11095#2 ------------------------------------------------------------
consensus_11095#1 ------------------------------------------------------------
consensus_11095#0 ATTGCACATTATACTTCATATATAGTATTATAATTAGCTTATCTTGTCGTGTGTTTATGC 120
consensus_11095#2 ------------------------------------------------------------
consensus_11095#1 ------------------------------------------------------------
consensus_11095#0 CTTGATGCAAGCTATAGCTCCTGGCTCTGAAACAATAGTTTTAAGAAATATATAATTTAT 180
consensus_11095#2 ------------------------------------------------------------
consensus_11095#1 --------------------------------------------GGAGTAGAAAACTTGT 16
consensus_11095#0 GGCGTGCAACTCCTATTCTTAGAAGTGTCCACCTGCCACCGCCATGGCACGTGCGTACGT 240
consensus_11095#2 ------------------------------------------------------------
consensus_11095#1 G-TGTGTA---TATAAGAGCAGGAGCTAGCATCATCAGCCAAGATGACCACTGAATTCCT 72
consensus_11095#0 GAAACTGACGTAATAT-TGAGCTGGCAGAAGTAGCAGA-GCAACTAGATAGACCAGCAGC 298
consensus_11095#2 ------------------------------------------------------------
consensus_11095#1 TAGAGTGGAGAAGTACCTGAGTGTGAAGAGGATGGAGCTGCAGCCGGAGCTCTCACTAGG 132
consensus_11095#0 ACCCACATGGATATTGGTGGGCAACGCATGCAGCTTAATTCAACGTGCATGATGCCACTT 358
consensus_11095#2 ------------------------------------------------------------
consensus_11095#1 GCCGACGTGGCCGGCGCCAGGCTTCGTCTCCTCCACCACCAAGAGCACCAAGAGCTCATC 192
consensus_11095#0 GTGATATCTAGCTACTTGCTCAACGTCCAAAAGATGCAAAACTTGTTGTATGATATGATG 418
consensus_11095#2 ------------------------------------------------------------
consensus_11095#1 GTCGGAGTCAGACGGCAGCTCCAGG--AAGAAGAGGAAGCACTTCACCTGGGAGGAGCCC 250
consensus_11095#0 CTGCCATG-ATTGGCTTATCATTTGATGTAATAGTCCCCGTTGTTTATCTTTTCTAATGC 477
consensus_11095#2 ------------------------------------------------------------
consensus_11095#1 GTGTCGCACGCCAACCTGGAGCTCCAGCTCAATGACCCC-CTGCCCCTCGACTGGGA-GC 308
consensus_11095#0 CATGTGTATATATGATTCTGTCAGTCTGGAAGGATGTATTACCTGAACAGGAAGACCTTG 537
consensus_11095#2 ------------------------------------------------------------
consensus_11095#1 AGTGCCTTGACCTG-------CAATCTGGAAGGATGTATTACCTGAACAGGAAGACCTTG 361
consensus_11095#0 AAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGCGTGAACCTGGAGCTCAACATCTCGACT 597
consensus_11095#2 ------------------------------------------------------------
consensus_11095#1 AAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGCGTGAACCTGGAGCTCAACATCTCGACT 421
consensus_11095#0 ACCCAGCCAACCGTCGTCGTCGTCCCCATCATTATCGATGGAGGAAGCACCGGAGCTGCT 657
consensus_11095#2 ------------------------------------------------------------
consensus_11095#1 ACCCAGCCAACCGTCGTCGTCGTCCCCACCATTATCGATGGAGGAAGCACCGGAGCTGCT 481
consensus_11095#0 GCTACTCCAGTTGCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTC 717
consensus_11095#2 ------------------------------------------------------------
consensus_11095#1 GCTACTCCAGTTGCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTC 541
consensus_11095#0 AGCTCTGGACCTGGAGGCAACATGGTGGCCGTGCCTTGTGTCAATTGCCACCTCCTCGTC 777
consensus_11095#2 ------------------------------------------------------------
consensus_11095#1 AGCTCTGGACCTGGAGGCAACATNGTGGCCGTGCCTTGTGTCAATTGCCACCTCCTCGTC 601
consensus_11095#0 ATGCTCTGCAAGTCCTCCCCATCC-TGTCCCAACTGCAAGTTCGCGCAGCCGTTGGCGCC 836
consensus_11095#2 ------------------------------------------------------------
consensus_11095#1 ATGCTCTGCAAGTCCTCCCCATCCCTGTCCCAACTGCAAGTTCGTGCAGCCGTTGGCGCC 661
consensus_11095#0 ACCGCCG-CCGGCCCTGCCGCACCGCAAGCTCGACGCCGTCAAGCCGCTGGAGACCTTGA 895
consensus_11095#2 --------------------------------------------------------TTGA 4
consensus_11095#1 ACCGCCNGCCGGCCCTGCCGCACCGCAAGCTNGACGCCGTCAAGCCGCTGGAGACCTTGA 721
****
consensus_11095#0 GCCTTCTCCATTAGGGCAGTCTAGCTAGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCC 955
consensus_11095#2 GCCTTCTCCATTAGGGCAGTCTAGCTNGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCC 64
consensus_11095#1 GCCTTCTCCATTAGGGCAGTCTAGCTAGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCC 781
************************** *********************************
consensus_11095#0 CCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTA 1015
consensus_11095#2 CCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTA 124
consensus_11095#1 CCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTA 841
************************************************************
consensus_11095#0 GTACTGTTTGAGGGAAGGACTATTGATCACTATGTTAATCCAGGGACTTTGACATAGAAT 1075
consensus_11095#2 GTACTGTTTGAGGGAAGGANTNTTGATCACTATGTTAATCCNGGGACTTTGACATAGAAT 184
consensus_11095#1 GTACTGTTTGAGGGAAGGACTATTGATCACTATGTTAATCCAGGGACTTTGACATAGAAT 901
******************* * ******************* ******************
consensus_11095#0 GGTGAGGGTGAGGAGGAGGCAATATAAATGTATTATTATTAATCAATCAATTAGTTAATA 1135
consensus_11095#2 GGTGAGGGTGAGGAGGNGGCNATNTAAATGTNTTNTTATTANTNAA--AANAAAAAAAAA 242
consensus_11095#1 GGTGAGGGTGAGGAGGAGGCAATATAAATGTATTATTATTAATCAATCAATTAGTTAATA 961
**************** *** ** ******* ** ****** * ** ** * ** *
consensus_11095#0 GTAATGGTGATAGATGTGCTA-------AAAAAAAAAAAA 1168
consensus_11095#2 ANAAAAAAAAAAAA------A-------AAAAAAAAAAA- 268
consensus_11095#1 GTAATGGTGATAGATGTGCTAGCTAGTTACTAGAAAAAAA 1001
** * * * * * * ******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||