These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11099#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 980 fasta sequence [CCTCCTCCCTCCTCCCTCCTCCCTCCAGATCCACCAGATCCAACAAATAGCACCCTCTCCTCCTCCCTCCCTCGGTGGCGGCTCTAACGGTGGTTCTGGTCCTCGGGTGGCGGCGCGCGGCGGCTCCAGCAGCTGTGTGTGGCGGCGATGGCGACGGAAGGAGAGTGCGCAGCGGCGACAATAGCAATGCATGCGGCGGTGATGGCGACGAAAGGCGAGCATCGGTTCTCGGGCGGTGACGCGCAGTCCCTTTGCCTCCCTCCTCTTGCCGCCTCTTTCCCTCCTCCCTTCTCTCTCCACCGCCACCAGCCTCCCTTCCCTCTCCACCGCTGTGT-GGGGG-AAG-AGGGCAGTGGCACGGGGAAGG-AGGTGTGGCAGCGGCGTGGCGTATGGCGCGG-CGGAGGTTCTTGACAGCAAGCGGGCGGCGCCGGAGCTGAGGACAGGCAACTACGACGACGACAACCACGAACGCGGCGGCGACGACGACGACAACGACGCTACCGGCCGGGAGCGTGGATCCGCCATCGACTATCCTCAGGAGCATGGCTCTGGCGG-CGGAGAGGCTCCCAGGCGGTGGATCTAAGGTGGCCGGGCTC-GGCGACC--TTGACCACGCACGGTTACTCCCCAA-CCTCTATCTCTTCTGGATCTGGCTTGGGGCCGAGGGGAGGAGACCGGCGGCGGCGGCAACAGCTGCTCCTCCAGTCCCAAATCTGGCAGCGGCTTCTTTATGCATTTGATTTGAATTTGGGGAGCGCTTGGGAACTACGGTTGCTAGATGTGGATTTTTCTCAATGCACTATCTTCCCATTCTATTGCAGATTTATTTGATGTAGATGATTTATGTATTACGTAATAGAGATGATG-TAGATGCTTTGATTTGTATGTCATGTTT-GATCAGTGGAAA--TAAGCAGCAAAGGAAATGCTTTGATTTGTATGTCATGTTTGAATGTTTGATTTGTGGAAATAAGCAGGAAAGGAAAAAA] [+] EMBL CA753952 [CCTCCTCCCTCCTCCCTCCTCCCTCCAGATCCACCAGATCCAACAAATAGCACCCTCTCCTCCTCCCTCCCTCGGTGGCGGCTCTAACGGTGGTTCTGGTCCTCGGGTGGCGGCGCGCGGCGGCTCCAGCAGCTGTGTGTGGCGGCGATGGCGACGGAAGGAGAGTGCGCAGCGGCGACTATAGCAATGCATGCGGCGGTGATGGCGACGAAAGGCGAGCATCGGTTCTCGGGCGGTGACGCGCAGTCCCTTTGCCTCCCTCCTCTTGCCGCCTCTTTCCCTCCTCCCTTCTCTCTCCACCGCCACCAGCCTCCCTTCCCTCTCCACCGCTGTGT GGGGG AAG AGGGCAGTGGCACGGGGAAGG AGGTGTGGCAGCGGCGTGGCGTATGGCGCGG CGGAGGTTCTTGACAGCAAGCGGGCGGCGCCGGAGCTGAGGACAGGCAACTACGACGACGACNACCACGAACGCGGTGGCGACGACGACTACNACGACGCTACCGGNCGGGAGCGTGGATCCGCCATCGACTATCCTCAGGAGCATGGCTCTGGCGGAAGAANAGGCTCCCAGGCGGTGGATCTAAGGTGGGCGGGCTCGGGCGACC TTGACCACGCAC ] [+] EMBL AK102516 [ CCAGATCCAACAAATAGCACCCTCTCCTCCTCCCTCCCTCGGTGGCGGCTCTAACGGTGGTTCTGGTCCTCGGGTGGCGGCGCGCGGCGGCTCCAGCAGCTGTGTGTGGCGGCGATGGCGACGGAAGGAGAGTGCGCAGCGGCGACAATAGCAATGCATGCGGCGGTGATGGCGACGAAAGGCGAGCATCGGTTCTCGGGCGGTGACGCGCAGTCCCTTTGCCTCCCTCCTCTTGCCGCCTCTTTCCCTCCTCCCTTCTCTCTCCACCGCCACCAGCCTCCCTTCCCTCTCCACCGCCGTGT GGGGG AAG AGGGCAGTGGCACGGGGAAGG AGGTGTGGCAGCGGCGTGGCGTATGGCGCGG CGGAGGTTCTTGACAGCAAGCGGGCGGCGCCGGAGCTGAGGACAGGCAACTACGACGACGACAACCACGAACGCGGCGGCGACGACGACGACAACGACGCTACCGGCCGGGAGCGTGGATCCGCCATCGACTATCCTCAGGAGCATGGCTCTGGCGG CGGAGAGGCTCCCAGGCGGTGGATCTAAGGTGGCCGGGCTC GGCGACC TTGACCACGCACGGTTACTCCCCAA CCTCTATCTCTTCTGGATCTGGCTTGGGGCCGAGGGGAGGAGACCGGCGGCGGCGGCAACAGCTGCTCCTCCAGTCCCAAATCTGGCAGCGGCTTCTTTATGCATTTGATTTGAATTTGGGGAGCGCTTGGGAACTACGGTTGCTAGATGTGGATTTTTCTCAATGCACTATCTTCCCATTCTATTGCAGATTTATTTGATGTAGATGATTTATGTATTACGTAATAGAGATGATG TAGATGCTTTGATTTGTATGTCATGTTT GATCAGTGGAAA TAAGCAGCAAAGGAAATGC ] [+] EMBL AU032264 [ CCAGATCCAACAAATAGCACCCTCTCCTCCTCCCTCCCTCGGTGGCGGCTCTAACGGTGGTTCTGGTCCTCGGGTGGCGGCGCGCGGCGGCTCCAGCAGCTGTGTGTGGCGGCGATGGCGANGGAAGGAGAGTNCGCA NGGCGACAATAGCNATGCATGCGGCGGTGATGGCGACGAAAGGCGAGCATCGGTTCTCGGGCGGTGACGCGCAGTCCCTTTGCCTCCCTCCTCTTGCCGCCTCTTTCCCTTCTCCCTTCTCTCTCCACCGCCAACAGCCTTCCTTCCCTCTCCACCGCTGTNTNGGGGA AAA ANGGCAGTTGCACGGG ] [+] EMBL CF317965 [ CAGATCCAACAAATAGCACCCTCTCCTCCTCCCTCCCTCGGTGGCGGCTCTAACGGTGGTTCTGGTCCTCGGGTGGCGGCGCGCGGCGGCTCCAGCAGCTGTGTGTGGCGGCGATGGCGACGGAAGGAGAGTGCGCAGCGGCGACAATAGCAATGCATGCGGCGGTGATGGCGACGAAAGGCGAGCATCGGTTCTCGGGCGGTGACGCGCAGTCCCTTTGCCTCCCTCCTCTTGCCGCCTCTTTCCCTCCTCCCTTCTCTCTCCACCGCCACCAGCCTCCCTTCCCTCT CACCGCTGTGT GGGGGAAAGAAGGGCAGTGGCACGGGGAAGGAAGGTGTGGCAGCGGCGTGGCGTATGGCGCGGNCGGAGGTTCTTGACAGCAAGCGGGCGGCGCCGGAGCTGAGGACAGGCAACTACGACGACGACAACCACGAACGCGGCGGCGACGACGACGACAACGACGCTACCGGCCGGGAGCGTGGATCCGCCATC ] [+] EMBL CF332796 [ gagtagaaaGGCGGCTCTAACGGTGGTTCTGGTCCTCGGGTGGCGGCGCGCGGCGGCTCCAGCAGCTGTGTGTGGCGGCGATGGCGACGGAAGGAGAGTGCGCAGCGGCGACAATAGCAATGCATGCGGCGGTGATGGCGACGAAAGGCGAGCATCGGTTCTCGGGCGGTGACGCGCAGTCCCTTTGCCTCCCTCCTCTTGCCGCCTCTTTCCCTCCTCCCTTCTCTCTCCACCGCCACCAGCCTCCCTTCCCTCTCCGCCGCTGTGT GGGGG AAG AGGGCAGTGGCACGGGGAAGG AGGTGTGGCAGCGGCGTGGCGTATGGCGCGG CGGAGGTTCTTGACAGCAAGCGGGCGGCGCCGGAGCTGAGGACAGGCAACTACGACGACGACAACCACGAACGCGGCGGCGACGACGACGACAACGACGCTACCGGCCGGGAGCGTGGATCCGCCATCGACTATCCTCAGGAGCATGGCTCTGGCGG CGGAGAGGCTCCCAGGCGGTGGATCTAAGGTGGCCGGGCTC GGCGACC TTGACCACGCACGGTTACTCCCCAA CCTCTATCTCTTC ] [+] EMBL AU077754 [ GGCGGCGACGACGACGACAACGACGCTACCGGCCGGGAGCGTGGATCCGCCATCGACTATCCTCAGGAGCATGGCTCTGGCGG CGGAGAGGCTCCCAGGCGGTGGATCTAAGGTGGCCGGGCTC GGCGACC TTGACCACGCACGGTTACTCCCCAA CCTCTATCTCTTCTGGATCTGGCTTGGGGCCGAGGGGAGGAGACCGGCGGCGGCGGCAACAGCTGCTCCTCCAGTCCCAAATCTGGCAGCGGCTTCTTTATGCATTTGATTTGAATTTGGGGAGCGCTTGGGAACTACGGTTGCTAGATGTGGATTTTTCTCAATGCACTATCTTCCCATTCTATTGCAGATTTATTTGATGTAGATGATTTATGTATTACGTAATAGAGATGATGTTAGATGCTTTGATTTGTATGTCATGTTTGGATCAGTGGAAAATTAAGCAGCA ] [+] EMBL AU077755 [ GCGACCCTTTGACCACGCACGGTTACTCCCCAACCCTCTATCTCTTCNGGATCTGGCTTGGGNCCGAGGGGAGGAGACCGGCGGCGGCGGCAACAGCTGCTCCTCCAGTCCCAAATCTGGCAGCGGCTTCTTTATGCATTTGATTTGAATTTGGGGAGCGCTTGGGAACTACGGTTGCTAGATGTGGATTTTTCTCAATGCACTATCTTCCCATTCTATTGCAGATTTATTTGATGTAGATGATTTATGTATTACGTAATAGAGATGATG TAGATGCTTTGATTTGTATGTCATGTTT GATCAGTGGAAA TAAGCAGCAAAGGAAATGCTTTGATTTGTATGTCATGTTTGAATGTTTGATTTGTGGAAATAAGCAGGAAAGGAAAAAA] [+] EMBL AU032265 [ GGCGGCNACAGCTGCTCCTCCAGTCCCAAATCTGGCAGCGGCTTCTTTATGCATTTGATTTGAATTTGGGGANCGCTTGGGAACTACGNTTGCTAGATGTGGA TTTCTCAATGCACTATCTTCCCATTCTATTGCAGATTTATTTGATGTAGATGATTTATGTATTACGTAATAGAGATGATG TAGATGCTTTGATTTGTATGTCATGTTT GATCAGTGGAAA TAAGCAGCAAAGGAAATGCTTTGATTTGTATGTCATGTTTGAATGTTTGATTTGTGGAAATAAGCAGGAAAGGAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||