These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1693 fasta sequence [TAGCTGCTGCGCGCTGACCAGCTAGCTGCCAATTGCTCCCTGTGAGCTGCGTGCTGCGAGAGGTCAAGCTAGCTGTAGTGGTCATGGCGAGCGTCCCGCTCCTCGCGGAGTGGCCGGCCGGGAAAGAGAAGGAGGAGGGGCGCGTCCGGCGGCGGCTGCCGGCGTTGGCGAGGGAGGCGTGGGAGGAGTCCAAGAAGCTGTGGGAGATCGTCGGCCCGGCCGTGTTCCTGCGGCTGGTGCTGTACAGCTTCAACATCATCAGCCAGGCCTTCGCCGGCCACATCGGCGACCTCGAGCTCGCCGCCTTCTCCATCGCCAACAACGTCATCACCGGCCTCAACTTTGGCTTCCTGCTGGGCATGGCTAGTGCACTGGAAACACTCTGCGGCCAGGCCTACGGCGCAAAGCAGTGCTCCATGCTTGGCATCTACCTACAACGTTCTTGGATCATCCTCTTCGTCTTCGCCGTGCTCCTCGTCCCGACCTACGTCTTCACCGCCCCGCTGCTCGAGGCGCTGGGCCAGCCCGCCGCGCTGGCGCGCAAGGCCGGCATGGTCAGCGTGTACATGCTCCCGTCGCACTTCCAGTACGCCGTCCTCCTGCCGCTCAACAAGTTCCTGCAGAGCCAGCGCAAGAACTGGGTCACCGTGGTGACCGCGGCGGCGGCGTTCCCGGTGCACATCGCGGTGAGCTGGCTGCTGGTCAGCCGCCTCCGGTTCGGGGTGCTCGGCGCCGCCATGTCGCTCGGTGTCTCCGGCTGGCTCGTCACGCTGCTGCAGCTCGCCTACGTCGTCGGCGGCGGGTGCCCGGTGACGTGGAGTGGGTTCTCCCCGTTGGCGTTCGTGGATTTGTGGGGTTTTGTCAAGCTGTCCGTCTCGTCTGGAGTTATGGTATGTTTGGAGACTTGGTACTACAAGATACTGATCCTGCTCACAGGACACCTGAAGAATTCTGAACTTGCAGTGAATGCTCTTTCTATCTGTATGAGTTTTCAATCTTGGGAGATGATGATTCCAGTGGGATTCTTAGCCGGCACCGGGGTGCGAGTGGCTAACGAGCTTGGCGCGGGCAACGGGAAGGGAGCAAAGTTCGCGACGATCGTGTCGACGACGACCTCCTTCCTGATCGGCCTCTTCTTCAGCGCGCTGGCGCTGGCCTTCCATGACAAGATAGCGCTCGTCTTCTCGTCGAGCAATGCGGTGATCGACGCCGTGGACAACATCTCCTTTCTGCTAGCCGTCACCATCCTCCTCAACGGCGTCCAACCTGTTCTTTCAGGGGTTGCTATTGGTTCAGGGTGGCAAGCGGCAGTGGCCTATGTAAACATCGGATGCTACTACTTCATCGGAGTTCCTATCGGTGTTCTGCTTGGTTGGAGTTTCAACCTTGGAGTTTTTGGAATTTGGGCTGGAATGATCGCTGGCACTGCAATCCAGACTATAATTCTGGCGCACATGACCATTCAGTGTGATTGGAACAAAGAGGTTTTGCAAGCAAGTGAACGCGTCCAAAGATGGGGGAACCCAAAATGAACAGGAGCAAGTATATTATGTGTTCGTACTAGCAGTATTGTGGATTGTTCACTGTATCAACAGGTTTTCCATGTTGGAGAATTGGGCTTGCTTGCTTGAGTTGCGGCTTGTAATTTGTAGAACTTTAGTTTAGAATTTGGTTGGTTACTCTACTTGCTTGA] [+] EMBL AK103478 [TAGCTGCTGCGCGCTGACCAGCTAGCTGCCAATTGCTCCCTGTGAGCTGCGTGCTGCGAGAGGTCAAGCTAGCTGTAGTGGTCATGGCGAGCGTCCCGCTCCTCGCGGAGTGGCCGGCCGGGAAAGAGAAGGAGGAGGGGCGCGTCCGGCGGCGGCTGCCGGCGTTGGCGAGGGAGGCGTGGGAGGAGTCCAAGAAGCTGTGGGAGATCGTCGGCCCGGCCGTGTTCCTGCGGCTGGTGCTGTACAGCTTCAACATCATCAGCCAGGCCTTCGCCGGCCACATCGGCGACCTCGAGCTCGCCGCCTTCTCCATCGCCAACAACGTCATCACCGGCCTCAACTTTGGCTTCCTGCTGGGCATGGCTAGTGCACTGGAAACACTCTGCGGCCAGGCCTACGGCGCAAAGCAGTGCTCCATGCTTGGCATCTACCTACAACGTTCTTGGATCATCCTCTTCGTCTTCGCCGTGCTCCTCGTCCCGACCTACGTCTTCACCGCCCCGCTGCTCGAGGCGCTGGGCCAGCCCGCCGCGCTGGCGCGCAAGGCCGGCATGGTCAGCGTGTACATGCTCCCGTCGCACTTCCAGTACGCCGTCCTCCTGCCGCTCAACAAGTTCCTGCAGAGCCAGCGCAAGAACTGGGTCACCGTGGTGACCGCGGCGGCGGCGTTCCCGGTGCACATCGCGGTGAGCTGGCTGCTGGTCAGCCGCCTCCGGTTCGGGGTGCTCGGCGCCGCCATGTCGCTCGGTGTCTCCGGCTGGCTCGTCACGCTGCTGCAGCTCGCCTACGTCGTCGGCGGCGGGTGCCCGGTGACGTGGAGTGGGTTCTCCCCGTTGGCGTTCGTGGATTTGTGGGGTTTTGTCAAGCTGTCCGTCTCGTCTGGAGTTATGGTATGTTTGGAGACTTGGTACTACAAGATACTGATCCTGCTCACAGGACACCTGAAGAATTCTGAACTTGCAGTGAATGCTCTTTCTATCTGTATGAGTTTTCAATCTTGGGAGATGATGATTCCAGTGGGATTCTTAGCCGGCACCGGGGTGCGAGTGGCTAACGAGCTTGGCGCGGGCAACGGGAAGGGAGCAAAGTTCGCGACGATCGTGTCGACGACGACCTCCTTCCTGATCGGCCTCTTCTTCAGCGCGCTGGCGCTGGCCTTCCATGACAAGATAGCGCTCGTCTTCTCGTCGAGCAATGCGGTGATCGACGCCGTGGACAACATCTCCTTTCTGCTAGCCGTCACCATCCTCCTCAACGGCGTCCAACCTGTTCTTTCAGGGGTTGCTATTGGTTCAGGGTGGCAAGCGGCAGTGGCCTATGTAAACATCGGATGCTACTACTTCATCGGAGTTCCTATCGGTGTTCTGCTTGGTTGGAGTTTCAACCTTGGAGTTTTTGGAATTTGGGCTGGAATGATCGCTGGCACTGCAATCCAGACTATAATTCTGGCGCACATGACCATTCAGTGTGATTGGAACAAAGAGGTTTTGCAAGCAAGTGAACGCGTCCAAAGATGGGGGAACCCAAAATGAACAGGAGCAAGTATATTATGTGTTCGTACTAGCAGTATTGTGGATTGTTCACTGTATCAACAGGTTTTCCATGTTGGAGAATTGGGCTTGCTTGCTTGAGTTGCGGCTTGTAATTTGTAGAACTTTAGTTTAGAATTTGGTTGGTTACTCTACTTGCTTGA] consensusID : consensus_111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [TTGACATCGGGGGGAAAACACAAGAGGAGGAATCGAAGAATTAATCGAAGCAGAGGAGGTTGGATTGTTCGTTCGTTCGGACGACACGGTCGGCGGCGATGGGTGACGGGCGAGGGGATGAGGAGGAGTGCATGGTGGCGCTGCTGAATGGCGGCGGCGCGGCGAAGGAGGGCTGGTGTTTTTGTCCGGCGGCGACGGCAAGCTGAGGAGGAGGGTGTGGGAGGAGTCNAGGAAGCTGTGGGTCATCGTGGCGCCGGCCATCTTCAGCCGCGTCGTCACCTACAGCATGAACGTCATCACGCAGGCGTTCGCCGGCCACCTCGGCGACCTCGAGCTCGCCGCCATCTCCATCGCCAACACCGTCGTCGTCGGCTTCAACTTCGGCCTCATGCTTTGGCATGGCGAGCGCGCTGGAGACG] [+] EMBL CB636985 [TTGACATCGGGGGGAAAACACAAGAGGAGGAATCGAAGAATTAATCGAAGCAGAGGAGGTTGGATTGTTCGTTCGTTCGGACGACACGGTCGGCGGCGATGGGTGACGGGCGAGGGGATGAGGAGGAGTGCATGGTGGCGCTGCTGAATGGCGGCGGCGCGGCGAAGGAGGGCTGGTGTTTTTGTCCGGCGGCGACGGCAAGCTGAGGAGGAGGGTGTGGGAGGAGTCNAGGAAGCTGTGGGTCATCGTGGCGCCGGCCATCTTCAGCCGCGTCGTCACCTACAGCATGAACGTCATCACGCAGGCGTTCGCCGGCCACCTCGGCGACCTCGAGCTCGCCGCCATCTCCATCGCCAACACCGTCGTCGTCGGCTTCAACTTCGGCCTCATGCTTTGGCATGGCGAGCGCGCTGGAGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_111#0 -------------------------------------TAGCTGCTGCGCGCTGACCAGCT 23 consensus_111#1 TTGACATCGGGGGGAAAACACAAGAGGAGGAATCGAAGAATTAATCGAAGCAGAGGAGGT 60 * * * ** ** ** * consensus_111#0 AG--CTGCCAATTGCTCCCTGTGA-GCTGCGTGCTGCGAGAGGTCAAGCTAGCTGTAGTG 80 consensus_111#1 TGGATTGTTCGTTCGTTCGGACGACACGGTCGGCGGCGATGGGTGACG---GGCGAGGGG 117 * ** ** * * ** * * ** **** *** * * * * * * consensus_111#0 GTCATGGCGAGCGTCCCGCTCCTC-GCGGAGTGGC--CGGCCGGGAAAGAGAAGGAGGAG 137 consensus_111#1 ATGAGGAGGAGTGCATGGTGGCGCTGCTGAATGGCGGCGGCGCGGCGAAGGAGGGCTGGT 177 * * * *** * * * * ** ** **** **** ** * ** ** * consensus_111#0 GGGCGCGTCCGGCGGCGGCTGCCGGCGTTGGCGAGGGAGGCGTGGGAGGAGTCCAAGAAG 197 consensus_111#1 GTTTTTGTCCGGCGGCGACGGCAAGC--TGAGGAGGAGGGTGTGGGAGGAGTCNAGGAAG 235 * *********** * ** ** ** **** ** ************ * **** consensus_111#0 CTGTGGGAGATCGTCGGCCCGGCCGTGTTCCTGCGGCTGGTGCTGTACAGCTTCAACATC 257 consensus_111#1 CTGTGGGTCATCGTGGCGCCGGCCATCTTCAGCCGCGTCGTCACCTACAGCATGAACGTC 295 ******* ***** * ****** * *** ** * ** ****** * *** ** consensus_111#0 ATCAGCCAGGCCTTCGCCGGCCACATCGGCGACCTCGAGCTCGCCGCCTTCTCCATCGCC 317 consensus_111#1 ATCACGCAGGCGTTCGCCGGCCACCTCGGCGACCTCGAGCTCGCCGCCATCTCCATCGCC 355 **** ***** ************ *********************** *********** consensus_111#0 AACAACGTCATCACCGGCCTCAACTTTGGCTTCCTGCTG-GGCATGGCTAGTGCACTGGA 376 consensus_111#1 AACACCGTCGTCGTCGGCTTCAACTTCGGCCTCATGCTTTGGCATGGCGAGCGCGCTGGA 415 **** **** ** **** ******* *** ** **** ******** ** ** ***** consensus_111#0 AACACTCTGCGGCCAGGCCTACGGCGCAAAGCAGTGCTCCATGCTTGGCATCTACCTACA 436 consensus_111#1 GACG-------------------------------------------------------- 419 ** consensus_111#0 ACGTTCTTGGATCATCCTCTTCGTCTTCGCCGTGCTCCTCGTCCCGACCTACGTCTTCAC 496 consensus_111#1 ------------------------------------------------------------ consensus_111#0 CGCCCCGCTGCTCGAGGCGCTGGGCCAGCCCGCCGCGCTGGCGCGCAAGGCCGGCATGGT 556 consensus_111#1 ------------------------------------------------------------ consensus_111#0 CAGCGTGTACATGCTCCCGTCGCACTTCCAGTACGCCGTCCTCCTGCCGCTCAACAAGTT 616 consensus_111#1 ------------------------------------------------------------ consensus_111#0 CCTGCAGAGCCAGCGCAAGAACTGGGTCACCGTGGTGACCGCGGCGGCGGCGTTCCCGGT 676 consensus_111#1 ------------------------------------------------------------ consensus_111#0 GCACATCGCGGTGAGCTGGCTGCTGGTCAGCCGCCTCCGGTTCGGGGTGCTCGGCGCCGC 736 consensus_111#1 ------------------------------------------------------------ consensus_111#0 CATGTCGCTCGGTGTCTCCGGCTGGCTCGTCACGCTGCTGCAGCTCGCCTACGTCGTCGG 796 consensus_111#1 ------------------------------------------------------------ consensus_111#0 CGGCGGGTGCCCGGTGACGTGGAGTGGGTTCTCCCCGTTGGCGTTCGTGGATTTGTGGGG 856 consensus_111#1 ------------------------------------------------------------ consensus_111#0 TTTTGTCAAGCTGTCCGTCTCGTCTGGAGTTATGGTATGTTTGGAGACTTGGTACTACAA 916 consensus_111#1 ------------------------------------------------------------ consensus_111#0 GATACTGATCCTGCTCACAGGACACCTGAAGAATTCTGAACTTGCAGTGAATGCTCTTTC 976 consensus_111#1 ------------------------------------------------------------ consensus_111#0 TATCTGTATGAGTTTTCAATCTTGGGAGATGATGATTCCAGTGGGATTCTTAGCCGGCAC 1036 consensus_111#1 ------------------------------------------------------------ consensus_111#0 CGGGGTGCGAGTGGCTAACGAGCTTGGCGCGGGCAACGGGAAGGGAGCAAAGTTCGCGAC 1096 consensus_111#1 ------------------------------------------------------------ consensus_111#0 GATCGTGTCGACGACGACCTCCTTCCTGATCGGCCTCTTCTTCAGCGCGCTGGCGCTGGC 1156 consensus_111#1 ------------------------------------------------------------ consensus_111#0 CTTCCATGACAAGATAGCGCTCGTCTTCTCGTCGAGCAATGCGGTGATCGACGCCGTGGA 1216 consensus_111#1 ------------------------------------------------------------ consensus_111#0 CAACATCTCCTTTCTGCTAGCCGTCACCATCCTCCTCAACGGCGTCCAACCTGTTCTTTC 1276 consensus_111#1 ------------------------------------------------------------ consensus_111#0 AGGGGTTGCTATTGGTTCAGGGTGGCAAGCGGCAGTGGCCTATGTAAACATCGGATGCTA 1336 consensus_111#1 ------------------------------------------------------------ consensus_111#0 CTACTTCATCGGAGTTCCTATCGGTGTTCTGCTTGGTTGGAGTTTCAACCTTGGAGTTTT 1396 consensus_111#1 ------------------------------------------------------------ consensus_111#0 TGGAATTTGGGCTGGAATGATCGCTGGCACTGCAATCCAGACTATAATTCTGGCGCACAT 1456 consensus_111#1 ------------------------------------------------------------ consensus_111#0 GACCATTCAGTGTGATTGGAACAAAGAGGTTTTGCAAGCAAGTGAACGCGTCCAAAGATG 1516 consensus_111#1 ------------------------------------------------------------ consensus_111#0 GGGGAACCCAAAATGAACAGGAGCAAGTATATTATGTGTTCGTACTAGCAGTATTGTGGA 1576 consensus_111#1 ------------------------------------------------------------ consensus_111#0 TTGTTCACTGTATCAACAGGTTTTCCATGTTGGAGAATTGGGCTTGCTTGCTTGAGTTGC 1636 consensus_111#1 ------------------------------------------------------------ consensus_111#0 GGCTTGTAATTTGTAGAACTTTAGTTTAGAATTTGGTTGGTTACTCTACTTGCTTGA 1693 consensus_111#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||