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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11101#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 946 fasta sequence
[AGGTCCAGACCGTTTCTGGCCGGAAGCAGCCAGAGCGTTGTGTCAGTGTGTGTGTGTGGGAGAGAGAGAGAGACAGCAGA-GGCTCC-ATCGGCCATGGCGCTCCTCCGCTCCCTGGCTTGC-TTCCTCTTCCTCCTCTGCTCGTCCTTCACCTTCGAGGCCGTAAATGGGAGGATGTACGGGGGAGGCGACGTGGTGGAGGAGGAGGAAGACGATAGCAGTACGGTCGCCGACGGCGC-TCGCGGCGGCGCGGGTGGGTGGCCCGGGTACCTC-TACACCAGGGCCGTCGGGAGATGCACGCCCCAATTC-TGGAGCAGTGGAGC-TGAGCAA-TGGCCCAAC-ATC-ATCCCTCAGGAAGCGGCGGTG-TCGAAGGTG-TTCGG-CTCAAGG-TCCA-TCGACAGGTACGGGCCACGGCTCACCGTGC-TGGAGGCCACCACGAGGACCGACGACAATGGCAGCAGCAGCGCCTTCGCCAAGCTCGTCAAGCAAGGCAGCGCGGCTCTGCTCAACGCCTACGCGCGCAAGGGCTTCCCCTTGGACTCGTGGGA-GGTGAAGGCGCTGCTGCTGGAGGCGCTCGTGTCCGAGGACGCCGCGGCCGCGCAGGCCGACCGGTTCGAGCAGGCCAACGAATCCTGCATCTGAATCCTGGATCCTAATAGCGTGTTTGTAGTAGGTCACCTCTTCTGTGACTACCCCCAGCGATCCTGAAGAAAAATGTTGGCACCGCCGCACCGGTGTTTAAGGTGCAATGTGTGTAGTAGTAGTAGATTGTATCCGTGTCCTTGTACGCGATTGTTCCTTCGATGTGTTCTGGTGCCGTGTAGGCAACGCGTCGTGTATGTTGCTTGTTAGAGTGATGTCCAGCCAGGCCTGCTGGGCCTTCTCAATCCTGTCGGTGTAAGGCAAGTTGGGATATTACGCTTACGCTGACATTTCTTTTGGTACGATAACGTAC]
[-] EMBL CB966881 [AGGTCCAGACCGTTTCTGGCCGGAAGCAGCCAGAGCGTTGTGTCAGTGTGTGTGTTTGGGAGAGAGAGAGAGACAGCAGAGGGCTCCAATCGGCCATGGCGCTCCTCCGCTCACTGGCTTGCTTTCCTCTTCCTCCTCTGCTCGTCCTTCACCTTCGAGGCCGTAAATGGGAGGATGTACGGGGGAGGCGACGTGGTGGAGGAGGAGGAAGACGATAGCAGTACGGTCGCCGACGGCGC TCGCGGCGGCGCGGGTGGGTGGCCCGGGTACCTC TACACCAGGGCCGTCGGGAGATGCACGCCCCAATTC TGGAGCAGTGGAGC TGAGCAA TGGCCCAAC ATC ATCCCTCAGGAAGCGGCGGTG TCGAAGGTG TTCGG CTCAAGG TCCA TCGACAGGTACGGGCCACGGCTCACCGTGC TGGAGGCCACCACGAGGACCGACGACAATGGCAGCAGCAGCGCCTTCGCCAAGCTCGTCAAGCAAGGCAGCGCGGCTCTGCTCAACGCCTACGCGCGCAAGGGCTTCCCCTT GACTCGTGGGA GGTGAAGGCGCTGCTGCTGGAGGCGCTCGTGTCCGAGa ]
[+] EMBL AK101663 [ TGTCAGTGTGTGTGTGTGGGAGAGAGAGAGAGACAGCAGA GGCTCC ATCGGCCATGGCGCTCCTCCGCTCCCTGGCTTGC TTCCTCTTCCTCCTCTGCTCGTCCTTCACCTTCGAGGCCGTAAATGGGAGGATGTACGGGGGAGGCGACGTGGTGGAGGAGGAGGAAGACGATAGCAGTACGGTCGCCGACGGCGC TCGCGGCGGCGCGGGTGGGTGGCCCGGGTACCTC TACACCAGGGCCGTCGGGAGATGCACGCCCCAATTC TGGAGCAGTGGAGC TGAGCAA TGGCCCAAC ATC ATCCCTCAGGAAGCGGCGGTG TCGAAGGTG TTCGG CTCAAGG TCCA TCGACAGGTACGGGCCACGGCTCACCGTGC TGGAGGCCACCACGAGGACCGACGACAATGGCAGCAGCAGCGCCTTCGCCAAGCTCGTCAAGCAAGGCAGCGCGGCTCTGCTCAACGCCTACGCGCGCAAGGGCTTCCCCTTGGACTCGTGGGA GGTGAAGGCGCTGCTGCTGGAGGCGCTCGTGTCCGAGGACGCCGCGGCCGCGCAGGCCGACCGGTTCGAGCAGGCCAACGAATCCTGCATCTGAATCCTGGATCCTAATAGCGTGTTTGTAGTAGGTCACCTCTTCTGTGACTACCCCCAGCGATCCTGAAGAAAAATGTTGGCACCGCCGCACCGGTGTTTAAGGTGCAATGTGTGTAGTAGTAGTAGATTGTATCCGTGTCCTTGTACGCGATTGTTCCTTCGATGTGTTCTGGTGCCGTGTAGGCAACGCGTCGTGTATGTTGCTTGTTAGAGTGATGTCCAGCCAGGCCTGCTGGGCCTTCTCAATCCTGTCGGTGTAAGGCAAGTTGGGATATTACGCTTACGCTGACATTTCTTTTGGTACGATAACGTAC]
[+] EMBL CF332624 [ AGTGTGTGTGTGTGGGAGAGAGAGAGAGACAGCAGA GGCTCC ATCGGCCATGGCGCTCCTCCGCTCCCTGGCTTGC TTCCTCTTCCTCCTCTGCTCGTCCTTCACCTTCGAGGCCGTAAATGGGAGGATGTACGGGGGAGGCGACGTGGTGGAGGAGGAGGAAGACGATAGCAGTACGGTCGCCGACGGCGC TCGCGGCGGCGCGGGTGGGTGGCCCGGGTACCTC TACACCAGGGCCGTCGGGAGATGCACGCCCCAATTC TGGAGCAGTGGAGC TGAGCAA TGGCCCAAC ATC ATCCCTCAGGAAGCGGCGGTG TCGAAGGTG TTCGG CTCAAGG TCCA TCGACAGGTACGGGCCACGGCTCACCGTGC TGGAGGCCACCACGAGGACCGACGACAATGGCAGCAGCAGCGCCTTCGCCAAGCTCGTCAAGCAAGGCAGCGCGGCTCTGCTCAACGCCTACGCGCGCAAGGGCTTCCCCTTGGACTCGTGGGAGGGTGAAGGCGCTGCTGCTGGAGGCGCTCGTGTCCGAGGACGCCGCGGCCGCGCAGGCCGACCGGTTCGAGCAGGCCAACGAATCCTGCATCTGAAT ]
[+] EMBL AU164241 [ TGTGGGAGAGAGAGAGAGACAGCAGA GGCTCC ATCGGCCATGGCGCTCCTCCGCTCCCTGGCTTGC TTCCTCTTCCTCCTCTGCTCGTCCTTCACCTTCGAGGCCGTAAATGGGAGGATGTACGGGGGAGGCGACGTGGTGGAGGAGGAGGAAGACGATAGCAGTACGGTCGCCGACGGCGC TCGCGGCGGCGCGGGTGGGTGGCCCGGGTACCTC TACACCAGGGCCGTCGGGAGATGCACGCCCCAATTC TGGAGCAGTGGAGC TGAGCAA TGGCCCAAC ATC ATCCCTCAGGAAGCGGCGGTG TCGAAGGTG TTCGG CTCAAGG TCCA TCGACAGGTACGGGCCACGGCTCACCGTGC TGGAGGCCACCACGAGGACCGACGACAATGGCAGCAGCAGCGCCTTCGCCAAGCTCGTCAAGCAAGGCAGCGCGGCTCTGCTCAACGCCTACGCGCGCAAGGGCTTCCCCTTGGACTCGTGGGA GGTGAAGGCGCTGCTGCTGGAGGCGCTCGTGTC ]
[+] EMBL C73875 [ TGTGGGAGAGAGAGAGAGACAGCAGA GGCTCC ATCGGCCATGGCGCTCCTCCGCTCCCTGGCTTGC TTCCTCTTCCTCCTCTGCTCGTCCTTCACCTTCGAGGCCGTAAATGGGAGGATGTACGGGGGAGGCGACGTGGTGGAGGAGGAGGAAGACGATAGCAGTACGGTCGCCGACGG GCTTCGCGGCGGCGCGGGTGGGTGGCCCGGGTACCTCTTACACCAGGGCCGTCGGGAGATGCACGCCCCAATTCTTGGAGCAGTGGAGCTTGAGCAATTGGCCCAACAATCAATCCCTCAGGAAGCGGCGGTGTTCGAAGGTGTTTCGGNTTAAAGGTTCCATTCGACAag ]
[+] EMBL C26723 [ ntnTGGGAGAGAGAGAGAGACAGCAGA GGCTCC ATCGGCCATGGCGCTCCTCCGCTCCCTGGCTTGC TTCCTCTTCCTCCTCTGCTCGTCCTTCACCTTCGAGGCCGTAAATGGGAGGATGTACGGGGGAGGCGACGTGGTGGAGGAGGAGGAAGACGATAGCAGTACGGTCGCCGACGGNCT TCGCGGCGGCGCGGGTGGGTGGCCCGGGTACCTC TACACCAGGGCCGTCGGGAGATGCACGCCCCAATTC TGGAGCAGTNGAGC TGAGCAA TGGCCCAAC ATC ATCCCTCAGGAAGCGGCGGTN TCGAAGGTG TTCGG CTCAAGG TCCA TCGACAGGTACGGGCCACGGCTCACCGTNCTTGGAGGCCACCACGAGGAC ]
consensusID : consensus_11101#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 833 fasta sequence
[GCTGGAGGCCACCACGAGGACCGACGACAATGGCAGCAGCAGCGCCTTCGCCAAGCTCGTCAAGCAAGGCAGCGCGGCTCTGCTCAACGCCTACGCGCGCAAGGGCTTCCCCTTGGACTCGTGGGAGGTGAAGGCGCTGCTGCTGGAGGCGCTCGTGTCCGAGGACGCCGCGGCCGCGCAGGCCGACCGGTTCGAGCAGGCCAACGAATCCTGCATCTGAATCCTGGATCCTAATAGCGTGTTTGTAGTAGGTCACCTCTTCTGTGACTACCTCCAGCGATCCTGAAGAAAAATGTTGGCACCGCCGCACCGGTGTTTAAGGTGCAATGTGTGTAGTAATANTAGATTGTATCCGTGTCCTTGTACGCGATTGTTCCTTCAATGTGTTCTGGTGCCGTGTAAGCAACGCGTCATGTATGTTGCTTGTTAGAGTGATGACCAACCAGACCTGCTGGGCCTTCTGGGAAGAAAACGGATTCTTTGCGCGCGTTTATGGTCCCTCGTTCTGTTGTAGGTGCGCTTTCGGCGCGTCGTCCCGTCCTTGCGTCGTCACGTTGTTTCTAGCGCTGGTGGTTCGGTTAGTGCCCTATTGAGCGTGTTTTGCACATTCCCTGCCTGGATGTGCCTATGCGCACCCCTTTAGTTAAGGCTCTTTGCGCGCCGCTTACTTTCCGCTTAACGTTTCACGCTTAAGCGCCGCTGCTGCTTGGGAGAGCTTGTACCCGGATAGTGCGGCTTTGTTGTTACCTTGTTATTGCGCGCGCTTTTCTACAGGATTTATATAGGTGGTGCTCTAGTCCTCTTGCTGGTGTGTACTTTATCTGGCCCACGTA]
[+] EMBL CA756921 [GCTGGAGGCCACCACGAGGACCGACGACAATGGCAGCAGCAGCGCCTTCGCCAAGCTCGTCAAGCAAGGCAGCGCGGCTCTGCTCAACGCCTACGCGCGCAAGGGCTTCCCCTTGGACTCGTGGGAGGTGAAGGCGCTGCTGCTGGAGGCGCTCGTGTCCGAGGACGCCGCGGCCGCGCAGGCCGACCGGTTCGAGCAGGCCAACGAATCCTGCATCTGAATCCTGGATCCTAATAGCGTGTTTGTAGTAGGTCACCTCTTCTGTGACTACCTCCAGCGATCCTGAAGAAAAATGTTGGCACCGCCGCACCGGTGTTTAAGGTGCAATGTGTGTAGTAATANTAGATTGTATCCGTGTCCTTGTACGCGATTGTTCCTTCAATGTGTTCTGGTGCCGTGTAAGCAACGCGTCATGTATGTTGCTTGTTAGAGTGATGACCAACCAGACCTGCTGGGCCTTCTGGGAAGAAAACGGATTCTTTGCGCGCGTTTATGGTCCCTCGTTCTGTTGTAGGTGCGCTTTCGGCGCGTCGTCCCGTCCTTGCGTCGTCACGTTGTTTCTAGCGCTGGTGGTTCGGTTAGTGCCCTATTGAGCGTGTTTTGCACATTCCCTGCCTGGATGTGCCTATGCGCACCCCTTTAGTTAAGGCTCTTTGCGCGCCGCTTACTTTCCGCTTAACGTTTCACGCTTAAGCGCCGCTGCTGCTTGGGAGAGCTTGTACCCGGATAGTGCGGCTTTGTTGTTACCTTGTTATTGCGCGCGCTTTTCTACAGGATTTATATAGGTGGTGCTCTAGTCCTCTTGCTGGTGTGTACTTTATCTGGCCCACGTA]
consensusID : consensus_11101#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence
[TCCGAGGACCCCGCGGCCGCGCAGGCCGACCGGTTTGAGCAGGCCAACGAATCCGGCATTTGAATCCTGGATCCTAAAAGGGTGTTTGTAGTAGGTCCCTTTTTTTGTGACTACCTCCAGCGATCCTAAAAAAAAATGTTGGCCCCGCTGCCCCGGTGTTTAAGGTCCAATGTGTGTAGTAGTAGTAAATTGTATCCGTGTCCTTGTACGCGATTGTTCCTTCAATGTGTTTTGGTCCCGTGTAGGCAACGCGTCGTGTATGTTGCTTGTTAAAGTAATGTCCAGCCAGGCCTGTTGGGCTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF332623 [TCCGAGGACCCCGCGGCCGCGCAGGCCGACCGGTTTGAGCAGGCCAACGAATCCGGCATTTGAATCCTGGATCCTAAAAGGGTGTTTGTAGTAGGTCCCTTTTTTTGTGACTACCTCCAGCGATCCTAAAAAAAAATGTTGGCCCCGCTGCCCCGGTGTTTAAGGTCCAATGTGTGTAGTAGTAGTAAATTGTATCCGTGTCCTTGTACGCGATTGTTCCTTCAATGTGTTTTGGTCCCGTGTAGGCAACGCGTCGTGTATGTTGCTTGTTAAAGTAATGTCCAGCCAGGCCTGTTGGGCTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11101#0 AGGTCCAGACCGTTTCTGGCCGGAAGCAGCCAGAGCGTTGTGTCAGTGTGTGTGTGTGGG 60
consensus_11101#2 ------------------------------------------------------------
consensus_11101#1 ------------------------------------------------------------
consensus_11101#0 AGAGAGAGAGAGACAGCAGAGGCTCCATCGGCCATGGCGCTCCTCCGCTCCCTGGCTTGC 120
consensus_11101#2 ------------------------------------------------------------
consensus_11101#1 ------------------------------------------------------------
consensus_11101#0 TTCCTCTTCCTCCTCTGCTCGTCCTTCACCTTCGAGGCCGTAAATGGGAGGATGTACGGG 180
consensus_11101#2 ------------------------------------------------------------
consensus_11101#1 ------------------------------------------------------------
consensus_11101#0 GGAGGCGACGTGGTGGAGGAGGAGGAAGACGATAGCAGTACGGTCGCCGACGGCGCTCGC 240
consensus_11101#2 ------------------------------------------------------------
consensus_11101#1 ------------------------------------------------------------
consensus_11101#0 GGCGGCGCGGGTGGGTGGCCCGGGTACCTCTACACCAGGGCCGTCGGGAGATGCACGCCC 300
consensus_11101#2 ------------------------------------------------------------
consensus_11101#1 ------------------------------------------------------------
consensus_11101#0 CAATTCTGGAGCAGTGGAGCTGAGCAATGGCCCAACATCATCCCTCAGGAAGCGGCGGTG 360
consensus_11101#2 ------------------------------------------------------------
consensus_11101#1 ------------------------------------------------------------
consensus_11101#0 TCGAAGGTGTTCGGCTCAAGGTCCATCGACAGGTACGGGCCACGGCTCACCGTGCTGGAG 420
consensus_11101#2 ------------------------------------------------------------
consensus_11101#1 -----------------------------------------------------GCTGGAG 7
consensus_11101#0 GCCACCACGAGGACCGACGACAATGGCAGCAGCAGCGCCTTCGCCAAGCTCGTCAAGCAA 480
consensus_11101#2 ------------------------------------------------------------
consensus_11101#1 GCCACCACGAGGACCGACGACAATGGCAGCAGCAGCGCCTTCGCCAAGCTCGTCAAGCAA 67
consensus_11101#0 GGCAGCGCGGCTCTGCTCAACGCCTACGCGCGCAAGGGCTTCCCCTTGGACTCGTGGGAG 540
consensus_11101#2 ------------------------------------------------------------
consensus_11101#1 GGCAGCGCGGCTCTGCTCAACGCCTACGCGCGCAAGGGCTTCCCCTTGGACTCGTGGGAG 127
consensus_11101#0 GTGAAGGCGCTGCTGCTGGAGGCGCTCGTGTCCGAGGACGCCGCGGCCGCGCAGGCCGAC 600
consensus_11101#2 ------------------------------TCCGAGGACCCCGCGGCCGCGCAGGCCGAC 30
consensus_11101#1 GTGAAGGCGCTGCTGCTGGAGGCGCTCGTGTCCGAGGACGCCGCGGCCGCGCAGGCCGAC 187
********* ********************
consensus_11101#0 CGGTTCGAGCAGGCCAACGAATCCTGCATCTGAATCCTGGATCCTAATAGCGTGTTTGTA 660
consensus_11101#2 CGGTTTGAGCAGGCCAACGAATCCGGCATTTGAATCCTGGATCCTAAAAGGGTGTTTGTA 90
consensus_11101#1 CGGTTCGAGCAGGCCAACGAATCCTGCATCTGAATCCTGGATCCTAATAGCGTGTTTGTA 247
***** ****************** **** ***************** ** *********
consensus_11101#0 GTAGGTCACCTCTTCTGTGACTACCCCCAGCGATCCTGAAGAAAAATGTTGGCACCGCCG 720
consensus_11101#2 GTAGGTCCCTTTTTTTGTGACTACCTCCAGCGATCCTAAAAAAAAATGTTGGCCCCGCTG 150
consensus_11101#1 GTAGGTCACCTCTTCTGTGACTACCTCCAGCGATCCTGAAGAAAAATGTTGGCACCGCCG 307
******* * * ** ********** *********** ** ************ **** *
consensus_11101#0 CACCGGTGTTTAAGGTGCAATGTGTGTAGTAGTAGTAGATTGTATCCGTGTCCTTGTACG 780
consensus_11101#2 CCCCGGTGTTTAAGGTCCAATGTGTGTAGTAGTAGTAAATTGTATCCGTGTCCTTGTACG 210
consensus_11101#1 CACCGGTGTTTAAGGTGCAATGTGTGTAGTAATANTAGATTGTATCCGTGTCCTTGTACG 367
* ************** ************** ** ** **********************
consensus_11101#0 CGATTGTTCCTTCGATGTGTTCTGGTGCCGTGTAGGCAACGCGTCGTGTATGTTGCTTGT 840
consensus_11101#2 CGATTGTTCCTTCAATGTGTTTTGGTCCCGTGTAGGCAACGCGTCGTGTATGTTGCTTGT 270
consensus_11101#1 CGATTGTTCCTTCAATGTGTTCTGGTGCCGTGTAAGCAACGCGTCATGTATGTTGCTTGT 427
************* ******* **** ******* ********** **************
consensus_11101#0 TAGAGTGATGTCCAGCCAGGCCTGCTGGGCCTTCTC-----AATCCTGTCGGTGTAAGGC 895
consensus_11101#2 TAAAGTAATGTCCAGCCAGGCCTGTTGGGCTTTTTC-----AAAAAAAAAAAAAAAAAAA 325
consensus_11101#1 TAGAGTGATGACCAACCAGACCTGCTGGGCCTTCTGGGAAGAAAACGGATTCTTTGCGCG 487
** *** *** *** **** **** ***** ** * **
consensus_11101#0 AAGTTGGGATATTACGCT-TACGCTGACATTTCTTTTGGTACGATAACGTAC-------- 946
consensus_11101#2 AAAAAAAAAA-------------------------------------------------- 335
consensus_11101#1 CGTTTATGGTCCCTCGTTCTGTTGTAGGTGCGCTTTCGGCGCGTCGTCCCGTCCTTGCGT 547
consensus_11101#0 ------------------------------------------------------------
consensus_11101#2 ------------------------------------------------------------
consensus_11101#1 CGTCACGTTGTTTCTAGCGCTGGTGGTTCGGTTAGTGCCCTATTGAGCGTGTTTTGCACA 607
consensus_11101#0 ------------------------------------------------------------
consensus_11101#2 ------------------------------------------------------------
consensus_11101#1 TTCCCTGCCTGGATGTGCCTATGCGCACCCCTTTAGTTAAGGCTCTTTGCGCGCCGCTTA 667
consensus_11101#0 ------------------------------------------------------------
consensus_11101#2 ------------------------------------------------------------
consensus_11101#1 CTTTCCGCTTAACGTTTCACGCTTAAGCGCCGCTGCTGCTTGGGAGAGCTTGTACCCGGA 727
consensus_11101#0 ------------------------------------------------------------
consensus_11101#2 ------------------------------------------------------------
consensus_11101#1 TAGTGCGGCTTTGTTGTTACCTTGTTATTGCGCGCGCTTTTCTACAGGATTTATATAGGT 787
consensus_11101#0 ----------------------------------------------
consensus_11101#2 ----------------------------------------------
consensus_11101#1 GGTGCTCTAGTCCTCTTGCTGGTGTGTACTTTATCTGGCCCACGTA 833
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||