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Oryza sativa
cluster # 11111 cluster # 11111       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11111#0 length = 2144 sequences # 7  
consensus_11111#1 length = 647 sequences # 1  

consensusID : consensus_11111#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 2144
fasta sequence
                              [CACCCATCCGCCGCCGCTGGCTGAACTCGCGGGTGATCTGATCGGAGCCGGAGGAGGAGGAGGAGGATGTTCGTGGAGGGCTTCAGGGTGGAGAGCCCGCGCGTGCGGTACGGCGACGGGGAGATCGAGTCGGAGTACCGATATGACACGACGGAGGTGGTGGCGCCGCCGTCGCCGGAGAAGGGGTGGGTCGTCCGCCCCAAGTCCGTCACCTACCACTTCAAGACCACCACCACCGTCCCCAAGCTCGGGGTGATGCTGGTTGGATGGGGAGGCAACAACGGCACCACGCTCACGGCTGGTGTCATCGCCAACAGAGAGGGAATTTCATGGGCGACCAAGGAGAAGGTGCACAAGGCCAACTAC-TTTGGTTCCCTGACACAATCATCCACCATCAGGGTTGGGAGCTACAACGGGGAGGAGATCTATGCGCCTTTTAAGAGCCTTGTACCCATGGTAAACCCAAACGACATCGTGTTCGGTGGGTGGGACATCAGCAGCATGAACCTGGCCGACGCCATGACCAGGGCTCGGGTGCTGGACATCGACCTGCAGAAGCAGCTCCGGCATCACATGGAGTCCATGGTGCCCCTCCCCGGCGTCTACAACCCTGACTTCATCGCCGCCAACCAGGGCTCCCGCGCCAACAATGTCATCAAGGGCACCAAGAAGGAGCAGGTCGAACAGGTCAAGAAGGACATCAGGGAGTTCAAGGAGAAGAGCAAGGTGGACAAGGTGGTGGTGCTGTGGACGGCCAACACGGAGCGGTACAGCAACGTGGTGGCCGGGATGAACGACACCATGGACAACCTGCTGGCGTCGCTGGACAAGGACGAGCCGGAGATGTCGCCGTCGACGCTCTACGCCATCGCCTGCGTCATGGAGGGCGTCCCCTTCATCAACGGCAGCCCCCAGAACACCTTCGTGCCCGGGCTGATCGAGCTCGCCATCAAGAAGAACTCGGTGATCGGCGGCGACGACTTCAAGAGTGGGCAGACCAAGATGAAGTCCGTCCTCGTCGACTTCCTCGTCGGCGCCGGCATCAAGCCGACGTCGATCGCGAGCTACAACCACCTAGGCAACAACGACGGCATGAACCTGTCGGCGCCGCAGACGTTCCGGTCCAAGGAGATCTCCAAGAGCGGCGTCGTCGACGACATGGTCTCCAGCAACGCCATCCTCTACGAGCCCGGCGAGCACCCCGACCACGTCATCGTCATCAAGTATATTCCATACGTTGGGGACAGCAAGAGGGCCATGGACGAGTACACCTCGGAGATCTTCATGGGAGGGAAGAACACCATCGTGCTGCACAACACCTGCGAGGACTCGCTCCTCGCCGCGCCCATCATCCTCGACCTCGTCCTCCTCGCCGAGCTCAGCACCAGGATCCAGCTCAAAGCTGAAGACCAGGATAAGTACCATTCTTTCCATCCAGTGGCTACCATCCTGAGCTACCTCAGCAAGGCTCCTCTTGTTCCCCCAGGCACACCAGTGGTGAATGCACTGGCCAAGCAGAGGGCCATGCTGGAGAACATCCTGAGGGCCTGTGTTGGACTGGCCCCTGAGAACAACATGATGCTTGAGTACAAGTGATATAGGCCTTGACAGGTCCTCTTATCAGGAGGGATGATGAACAGCAAGTGGTGGAGGAAGGTGACAGTTTTCTTCAACAAGAAAAAGAACAAAAAAAGAGAGAAAATGAGGAACACCTGAAAGAAATAACAAGAGGCCAAGTGGGGAAGCAAATGAAATGATCAAGTGATATTCATTCAGAAAATGGGTGTCATTCACTTGGATCCTCTTAATTGGGGGCATCTATTGACAGTTTGACACTCTGCTCCATGATTTTTTTTTTCATTTTTTGTTTTTTTAATTGAGATGGAGACTTTTTTCAGCTCTGCTGCTAGTATGCTGTGAGCTGC-ATGAACATTGGTTAATATT-GTGTATGATGATAGGTGAAG-CAAGGAACTAATCGTCTTCTATGCTTATGGATCTATAGTACAAGTTGTCAGTATTACTGTTAAGTCTTATATCTGGAACACTTTGTGAATCAAAGAACAGCTTGGGGTCCTAGTCGTGGTATTTATGAGGCCAGTGGTTCTGGTTATCAAAATGCAGCAATTTCCGTGGTTATTATCCGT]

[+] EMBL AK069323             [CACCCATCCGCCGCCGCTGGCTGAACTCGCGGGTGATCTGATCGGAGCCGGAGGAGGAGGAGGAGGATGTTCGTGGAGGGCTTCAGGGTGGAGAGCCCGCGCGTGCGGTACGGCGACGGGGAGATCGAGTCGGAGTACCGATATGACACGACGGAGGTGGTGGCGCCGCCGTCGCCGGAGAAGGGGTGGGTCGTCCGCCCCAAGTCCGTCACCTACCACTTCAAGACCACCACCACCGTCCCCAAGCTCGGGGTGATGCTGGTTGGATGGGGAGGCAACAACGGCACCACGCTCACGGCTGGTGTCATCGCCAACAGAGAGGGAATTTCATGGGCGACCAAGGAGAAGGTGCACAAGGCCAACTAC TTTGGTTCCCTGACACAATCATCCACCATCAGGGTTGGGAGCTACAACGGGGAGGAGATCTATGCGCCTTTTAGGAGCCTTGTACCCATGGTAAACCCAAACGACATCGTGTTCGGTGGGTGGGACATCAGCAGCATGAACCTGGCCGACGCCATGACCAGGGCTCGGGTGCTGGACATCGACCTGCAGAAGCAGCTCCGGCATCACATGGAGTCCATGGTGCCCCTCCCCGGCGTCTACAACCCTGACTTCATCGCCGCCAACCAGGGCTCCCGCGCCAACAATGTCATCAAGGGCACCAAGAAGGAGCAGGTCGAACAGGTCAAGAAGGACATCAGGGAGTTCAAGGAGAAGAGCAAGGTGGACAAGGTGGTGGTGCTGTGGACGGCCAACACGGAGCGGTACAGCAACGTGGTGGCCGGGATGAACGACACCATGGACAACCTGCTGGCGTCGCTGGACAAGGACGAGCCGGAGATGTCGCCGTCGACGCTCTACGCCATCGCCTGCGTCATGGAGGGCGTCCCCTTCATCAACGGCAGCCCCCAGAACACCTTCGTGCCCGGGCTGATCGAGCTCGCCATCAAGAAGAACTCGGTGATCGGCGGCGACGACTTCAAGAGTGGGCAGACCAAGATGAAGTCCGTCCTCGTCGACTTCCTCGTCGGCGCCGGCATCAAGCCGACGTCGATCGCGAGCTACAACCACCTAGGCAACAACGACGGCATGAACCTGTCGGCGCCGCAGACGTTCCGGTCCAAGGAGATCTCCAAGAGCGGCGTCGTCGACGACATGGTCTCCAGCAACGCCATCCTCTACGAGCCCGGCGAGCACCCCGACCACGTCATCGTCATCAAGTATATTCCATACGTTGGGGACAGCAAGAGGGCCATGGACGAGTACACCTCGGAGATCTTCATGGGAGGGAAGAACACCATCGTGCTGCACAACACCTGCGAGGACTCGCTCCTCGCCGCGCCCATCATCCTCGACCTCGTCCTCCTCGCCGAGCTCAGCACCAGGATCCAGTTCAAAGCTGAAGACCAGGATAAGTACCATTCTTTCCATCCAGTGGCTACCATCCTGAGCTACCTCAGCAAGGCTCCTCTTGTTCCCCCAGGCACACCAGTGGTGAATGCACTGGCCAAGCAGAGGGCCATGCTGGAGAACATCCTGAGGGCCTGTGTTGGACTGGCCCCTGAGAACAACATGATGCTTGAGTACAAGTGATATAGGCCTTGACAGGTCCTCTTATCAGGAGGGATGATGAACAGCAAGTGGTGGAGGAAGGTGACAGTTTTCTTCAACAAGAAAAAGAACAAAAAAAGAGAGAAAATGAGGAACACCTGAAAGAAATAACAAGAGGCCAAGTGGGGAAGCAAATGAAATGATCAAGTGATATTCATTCAGAAAATGGGTGTCATTCACTTGGATCCTCTTAATTGGGGGCATCTATTGACAGTTTGACACTCTGCTCCATGATTTTTTTTTTCATTTTTTGTTTTTTTAATTGAGATGGAGACTTTTTTCAGCTCTGCTGCTAGTATGCTGTGAGCTGC ATGAACATTGGTTAATATT GTGTATGATGATAGGTGAAG CAAGGAACTAATCGTCTTCTATGCTTATGGATCTATAGTACAAGTTGTCAGTATTACTGTTAAGTCTTATATCTGGAACA                                                                                                    ]
[+] EMBL AK100872             [ ACCCATCCGCCGCCGCTGGCTGAACTCGCGGGTGATCTGATCGGAGCCGGAGGAGGAGGAGGAGGATGTTCGTGGAGGGCTTCAGGGTGGAGAGCCCGCGCGTGCGGTACGGCGACGGGGAGATCGAGTCGGAGTACCGATATGACACGACGGAGGTGGTGGCGCCGCCGTCGCCGGAGAAGGGGTGGGTCGTCCGCCCCAAGTCCGTCACCTACCACTTCAAGACCACCACCACCGTCCCCAAGCTCGGGGTGATGCTGGTTGGATGGGGAGGCAACAACGGCACCACGCTCACGGCTGGTGTCATCGCCAACAGAGAGGGAATTTCATGGGCGACCAAGGAGAAGGTGCACAAGGCCAACTAC TTTGGTTCCCTGACACAATCATCCACCATCAGGGTTGGGAGCTACAACGGGGAGGAGATCTATGCGCCTTTTAAGAGCCTTATACCCATGGTAAACCCAAACGACATCGTGTTCGGTGGGTGGGACATCAGCAGCATGAACCTGGCCGACGCCATGACCAGGGCTCGGGTGCTGGACATCGACCTGCAGAAGCAGCTCCGGCATCACATGGAGTCCATGGTGCCCCTCCCCGGCGTCTACAACCCTGACTTCATCGCCGCCAACCAGGGCTCCCGCGCCAACAATGTCATCAAGGGCACCAAGAAGGAGCAGGTCGAACAGGTCAAGAAGGACATCAGGGAGTTCAAGGAGAAGAGCAAGGTGGACAAGGTGGTGGTGCTGTGGACGGCCAACACGGAGCGGTACAGCAACGTGGTGGCCGGGATGAACGACACCATGGACAACCTGCTGGCGTCGCTGGACAAGGACGAGCCGGAGATGTCGCCGTCGACGCTCTACGCCATCGCCTGCGTCATGGAGGGCGTCCCCTTCATCAACGGCAGCCCCCAGAACACCTTCGTGCCCGGGCTGATCGAGCTCGCCATCAAGAAGAACTCGGTGATCGGCGGCGACGACTTCAAGAGTGGGCAGACCAAGATGAAGTCCGTCCTCGTCGACTTCCTCGTCGGCGCCGGCATCAAGCCGACGTCGATCGCGAGCTACAACCACCTAGGCAACAACGACGGCATGAACCTGTCGGCGCCGCAGACGTTCCGGTCCAAGGAGATCTCCAAGAGCGGCGTCGTCGACGACATGGTCTCCAGCAACGCCATCCTCTACGAGCCCGGCGAGCACCCCGACCACGTCATCGTCATCAAGTATATTCCATACGTTGGGGACAGCAAGAGGGCCATGGACGAGTACACCTCGGAGATCTTCATGGGAGGGAAGAACACCATCGTGCTGCACAACACCTGCGAGGACTCGCTCCTCGCCGCGCCCATCATCCTCGACCTCGTCCTCCTCGCCGAGCTCAGCACCAGGATCCAGCTCAAAGCTGAAGACCAGGATAAGTACCATTCTTTCCATCCAGTGGCTACCATCCTGAGCTACCTCAGCAAGGCTCCTCTTGTTCCCCCAGGCACACCAGTGGTGAATGCACTGGCCAAGCAGAGGGCCATGCTGGAGAACATCCTGAGGGCCTGTGTTGGACTGGCCCCTGAGAACAACATGATGCTTGAGTACAAGTGATATAGGCCTTGACAGGTCCTCTTATCAGGAGGGATGATGAACAGCAAGTGGTGGAGGAAGGTGACAGTTTTCTTCAACAAGAAAAAGAACAAAAAAAGAGAGAAAATGAGGAACACCTGAAAGAAATAACAAGAGGCCAAGTGGGGAAGCAAATGAAATGATCAAGTGATATTCATTCAGAAAATGGGTGTCATTCACTTGGATCCTCTTAATTGGGGGCATCTATTGACAGTTTGACACTCTGCTCCATGATTTTTTTTTTCATTTTTTGTTTTTTTAATTGAGATGGAGACTTTTTTCAGCTCTGCTGCTAGTATGCTGTGAGCTGC ATGAACATTGGTTAATATT GTGTATGATGATAGGTGAA                                                                                                                                                                                      ]
[+] EMBL AU063856             [         GCCGCCGCTGGCTGAACTCGCGGGTGATCTGATCGGAGCCGGAGGAGGAGGAGGAGGATGTTCGTGGAGGGCTTCAGGGTGGAGAGCCCGCGCGTGCGGTACGGCGACGGGGAGATCGAGTCGGAGTACCGATATGACACGACGGAGGTGGTGGCGCCGCCGTCGCCGGAGAAGGGGTGGGTCGTCCGCCCCAAGTCCGTCACCTACCACTTCAAGACCACCACCACCGTCCCCAAGCTCGGGGTGATGCTGGTTGGATGGGGAGGCAACAACGGCACCACGCTCACGGCTGGTGTCATCGCCAACAGAGAGGGAATTTCATGGGCGACCAAGGAGAAGGTGCACAAGGCCAACTACTTTTGGTTCCCTGACACAATCATCCACCATCAGGGTTGGGAGCTACAAC GGGAAGAGATCTNTGCGCCTTTTAAGAG CTTTTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU064000             [         GCCGCCGCTGGCTGAACTCGCGGGTGATCTGATCGGAGCCGGAGGAGGAGGAGGAGGATGTTCGTGGAGGGCTTCAGGGTGGAGAGCCCGCGCGTGCGGTACGGCGACGGGGAGATCGAGTCGGAGTACCGATATGACACGACGGAGGTGGTGGCGCCGCCGTCGCCGGAGAAGGGGTGGGTCGTCCGCCCCAAGTCCGTCACCTACCACTTCAAGACCACCACCACCGTCCCCAAGCTCGGGGTGATGCTGGTTGGATGGGGAGGCAACAACGGCACCACGCTCACGGCTGGTGTCATCGCCAACAGAGAGGG ATTTCATGGGCGACCAAGGAGAAGGTGCACAAGG CAACTAA TTTtg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU085856             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            anTGGGCAGACCAAGATGAAGTCCGTCNTCGTCGACTTCCTCGTCGGCGCCGGCATCAAGCCGACNTCGATCGCGAGNTACAACCACCTAGGCAACAACGACGGCATGAA CTGTCGGCGCCGCAGACGTTCCGGTCCAAGGAGATCTCCAAGAGCGGCGTCGTCGACGACATGGTCTCCAGCAACGCCATCCTCTACGAGCCCGGCGAGCACCCCGACCACGTCATCGTCATCAAGTATATTCCATACGTTGGGGACAGCAAGAGGGCCATGGACGAGTACACCTCGGAGATCTTCATGGGAGGGAAGAACACCATCGTGCTGCACAACACCTGCGAGGACTCGCTCCTCGCNGCGCCCATCATCCTCGACCTCGTCCTCCTCNCTGAGCTCAGCACCAGGATCCAGCTCAAAGCTGAAGACCAGGATAAGTACCATTCTTTCCATCCAGTGGCTACCATCCTGAGCTACCTCAGCAAGGCTCCTCTTGTTCCCCNAGGCACACCAGTGGTGAATGCACTGGCCAAGCAGAGGGCCATGCTGGAGAACATCCTGAGGGCCTGTGTTGGACTGGCCCCTGAGAACAACATGATGCTTGAGTACAAGTGATATAGGCCTTGACAGGTCCTCTTATCAGGAGGGATGATGAACAGCAAGTGGTGGAGGAAGGTGACAGTTTTCTTCAACAAGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU075399             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGGTCTCCAGNAACGCCATCTTTTACGAGCCCGGCGAGCACCCCGACCACGTCATCGTCATCAAGTATATTCCATACGTTGGGGACAGCAAGAGGCCCNTGGACGAGTACACCTCGGAGATCTTCATGGGAGGGAAGAACACCATCGTGNTGCACAACACCTGCGAGGANTCGCTCNTCGCCGCGCCCATCATCCTCGACCTCGTCCTCCTCGCCGAGCTCAGCACCAGGATCCAGCTCAAAGCTGAAGACCAGGATAAGTACCATTCTTTCCATCCAGTGGCTACCATCCTGAGCTACCTCAGCAAGGCTCCTCTTGTTCCCCCAGGCACACCANTGGTGAATGCACTGGCCAAGCAGAGGNCCATGCTGGAGAACATCCTGAGGNCCTNTGTTGGACTGGCCCCTGAGAACAACATGATGCTTGAGTACAAGTGATATAGG CTTGACAGGTCCTCTTATCAGGAGGGATGATGAACAGCAAGTGGTGGAGGAAGGTGACAGTTTTCTTCAACAAGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL BI804055             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTAATTGAGATGGAGACTTTTTTCAGCTCTGGTGGTAGTATGCTGTGAGCTGCGATGAACATTGGTTAATATTGGGGTATGATGATAGGTGAAGCCAAGGAACTAATCGTCTTCTATGCTTATGGATCTATAGTACAAGTTGTCAGTATTACTGTTAAGTCTTATATCTGGAACACTTTGTGAATCAAAGAACAGCTTGGGGTCCTAGTCGTGGTATTTATGAGGCCAGTGGTTCTGGTTATCAAAATGCAGCAATTTCCGTGGTTATTATCCGT]


>consensus_11111#0 CACCCATCCGCCGCCGCTGGCTGAACTCGCGGGTGATCTGATCGGAGCCGGAGGAGGAGG AGGAGGATGTTCGTGGAGGGCTTCAGGGTGGAGAGCCCGCGCGTGCGGTACGGCGACGGG GAGATCGAGTCGGAGTACCGATATGACACGACGGAGGTGGTGGCGCCGCCGTCGCCGGAG AAGGGGTGGGTCGTCCGCCCCAAGTCCGTCACCTACCACTTCAAGACCACCACCACCGTC CCCAAGCTCGGGGTGATGCTGGTTGGATGGGGAGGCAACAACGGCACCACGCTCACGGCT GGTGTCATCGCCAACAGAGAGGGAATTTCATGGGCGACCAAGGAGAAGGTGCACAAGGCC AACTACTTTGGTTCCCTGACACAATCATCCACCATCAGGGTTGGGAGCTACAACGGGGAG GAGATCTATGCGCCTTTTAAGAGCCTTGTACCCATGGTAAACCCAAACGACATCGTGTTC GGTGGGTGGGACATCAGCAGCATGAACCTGGCCGACGCCATGACCAGGGCTCGGGTGCTG GACATCGACCTGCAGAAGCAGCTCCGGCATCACATGGAGTCCATGGTGCCCCTCCCCGGC GTCTACAACCCTGACTTCATCGCCGCCAACCAGGGCTCCCGCGCCAACAATGTCATCAAG GGCACCAAGAAGGAGCAGGTCGAACAGGTCAAGAAGGACATCAGGGAGTTCAAGGAGAAG AGCAAGGTGGACAAGGTGGTGGTGCTGTGGACGGCCAACACGGAGCGGTACAGCAACGTG GTGGCCGGGATGAACGACACCATGGACAACCTGCTGGCGTCGCTGGACAAGGACGAGCCG GAGATGTCGCCGTCGACGCTCTACGCCATCGCCTGCGTCATGGAGGGCGTCCCCTTCATC AACGGCAGCCCCCAGAACACCTTCGTGCCCGGGCTGATCGAGCTCGCCATCAAGAAGAAC TCGGTGATCGGCGGCGACGACTTCAAGAGTGGGCAGACCAAGATGAAGTCCGTCCTCGTC GACTTCCTCGTCGGCGCCGGCATCAAGCCGACGTCGATCGCGAGCTACAACCACCTAGGC AACAACGACGGCATGAACCTGTCGGCGCCGCAGACGTTCCGGTCCAAGGAGATCTCCAAG AGCGGCGTCGTCGACGACATGGTCTCCAGCAACGCCATCCTCTACGAGCCCGGCGAGCAC CCCGACCACGTCATCGTCATCAAGTATATTCCATACGTTGGGGACAGCAAGAGGGCCATG GACGAGTACACCTCGGAGATCTTCATGGGAGGGAAGAACACCATCGTGCTGCACAACACC TGCGAGGACTCGCTCCTCGCCGCGCCCATCATCCTCGACCTCGTCCTCCTCGCCGAGCTC AGCACCAGGATCCAGCTCAAAGCTGAAGACCAGGATAAGTACCATTCTTTCCATCCAGTG GCTACCATCCTGAGCTACCTCAGCAAGGCTCCTCTTGTTCCCCCAGGCACACCAGTGGTG AATGCACTGGCCAAGCAGAGGGCCATGCTGGAGAACATCCTGAGGGCCTGTGTTGGACTG GCCCCTGAGAACAACATGATGCTTGAGTACAAGTGATATAGGCCTTGACAGGTCCTCTTA TCAGGAGGGATGATGAACAGCAAGTGGTGGAGGAAGGTGACAGTTTTCTTCAACAAGAAA AAGAACAAAAAAAGAGAGAAAATGAGGAACACCTGAAAGAAATAACAAGAGGCCAAGTGG GGAAGCAAATGAAATGATCAAGTGATATTCATTCAGAAAATGGGTGTCATTCACTTGGAT CCTCTTAATTGGGGGCATCTATTGACAGTTTGACACTCTGCTCCATGATTTTTTTTTTCA TTTTTTGTTTTTTTAATTGAGATGGAGACTTTTTTCAGCTCTGCTGCTAGTATGCTGTGA GCTGCATGAACATTGGTTAATATTGTGTATGATGATAGGTGAAGCAAGGAACTAATCGTC TTCTATGCTTATGGATCTATAGTACAAGTTGTCAGTATTACTGTTAAGTCTTATATCTGG AACACTTTGTGAATCAAAGAACAGCTTGGGGTCCTAGTCGTGGTATTTATGAGGCCAGTG GTTCTGGTTATCAAAATGCAGCAATTTCCGTGGTTATTATCCGT



consensusID : consensus_11111#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence
                              [TGCGAACATGACTCGCCGGACCGAGCGTCCACACGAAGCACCGACCCCGCGCCACGACGTGCCGCACCCCGAGGACGCCGACATACACTTTCTATCGCGCCGTGCGAGAAAGTCGAACAGAAAACACAGGAGTCGATAAGAGGAGACACAGACGAGCCGCCGAGAGAAGACCAGATGAGAATCGAGGTGTCACCTGCTCCAGAGGCGGTGAGAAGGACAAACCCCACAATACCCAACCAAAACATTATCCATTGGTAGCGTACCCGCACCCCGCATAACCAACACCTCGAAGAGGGGGCAACATGGGCAGAACGGTGAGGAAGGACGAGGGAGGAGAACAACGATAACGAGCCCACCGACCCCCCCCGGGAGCGACCATTCTCTCATGCAACGCGGTGGATCCTCGAACAACCTCATCGAGGCTGCTCTTGTTACTCAGAGCACGACAATGGTGAATGCTCTGGCCAAGCAGAGGGCCATCCTGGAGAACATCCTGAGGGCCTGTGTTGGACTGGCCAATAAAAACAACATGATGCTTGAGTACAAGTGATATAGGCCTTGACAGGTCCTCTTATCAGGAGGGATGATGAACAGCAAGTGGTGGAGGAAGGTGACAGTTTTCTTCCCCAAGAAAAAAAAAAAAAAAA]

[-] EMBL CA759320             [TGCGAACATGACTCGCCGGACCGAGCGTCCACACGAAGCACCGACCCCGCGCCACGACGTGCCGCACCCCGAGGACGCCGACATACACTTTCTATCGCGCCGTGCGAGAAAGTCGAACAGAAAACACAGGAGTCGATAAGAGGAGACACAGACGAGCCGCCGAGAGAAGACCAGATGAGAATCGAGGTGTCACCTGCTCCAGAGGCGGTGAGAAGGACAAACCCCACAATACCCAACCAAAACATTATCCATTGGTAGCGTACCCGCACCCCGCATAACCAACACCTCGAAGAGGGGGCAACATGGGCAGAACGGTGAGGAAGGACGAGGGAGGAGAACAACGATAACGAGCCCACCGACCCCCCCCGGGAGCGACCATTCTCTCATGCAACGCGGTGGATCCTCGAACAACCTCATCGAGGCTGCTCTTGTTACTCAGAGCACGACAATGGTGAATGCTCTGGCCAAGCAGAGGGCCATCCTGGAGAACATCCTGAGGGCCTGTGTTGGACTGGCCAATAAAAACAACATGATGCTTGAGTACAAGTGATATAGGCCTTGACAGGTCCTCTTATCAGGAGGGATGATGAACAGCAAGTGGTGGAGGAAGGTGACAGTTTTCTTCCCCAAGAAAAAAAAAAAAAAAA]


>consensus_11111#1 TGCGAACATGACTCGCCGGACCGAGCGTCCACACGAAGCACCGACCCCGCGCCACGACGT GCCGCACCCCGAGGACGCCGACATACACTTTCTATCGCGCCGTGCGAGAAAGTCGAACAG AAAACACAGGAGTCGATAAGAGGAGACACAGACGAGCCGCCGAGAGAAGACCAGATGAGA ATCGAGGTGTCACCTGCTCCAGAGGCGGTGAGAAGGACAAACCCCACAATACCCAACCAA AACATTATCCATTGGTAGCGTACCCGCACCCCGCATAACCAACACCTCGAAGAGGGGGCA ACATGGGCAGAACGGTGAGGAAGGACGAGGGAGGAGAACAACGATAACGAGCCCACCGAC CCCCCCCGGGAGCGACCATTCTCTCATGCAACGCGGTGGATCCTCGAACAACCTCATCGA GGCTGCTCTTGTTACTCAGAGCACGACAATGGTGAATGCTCTGGCCAAGCAGAGGGCCAT CCTGGAGAACATCCTGAGGGCCTGTGTTGGACTGGCCAATAAAAACAACATGATGCTTGA GTACAAGTGATATAGGCCTTGACAGGTCCTCTTATCAGGAGGGATGATGAACAGCAAGTG GTGGAGGAAGGTGACAGTTTTCTTCCCCAAGAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11111#0      CACCCATCCGCCGCCGCTGGCTGAACTCGCGGGTGATCTGATCGGAGCCGGAGGAGGAGG 60
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      AGGAGGATGTTCGTGGAGGGCTTCAGGGTGGAGAGCCCGCGCGTGCGGTACGGCGACGGG 120
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      GAGATCGAGTCGGAGTACCGATATGACACGACGGAGGTGGTGGCGCCGCCGTCGCCGGAG 180
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      AAGGGGTGGGTCGTCCGCCCCAAGTCCGTCACCTACCACTTCAAGACCACCACCACCGTC 240
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      CCCAAGCTCGGGGTGATGCTGGTTGGATGGGGAGGCAACAACGGCACCACGCTCACGGCT 300
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      GGTGTCATCGCCAACAGAGAGGGAATTTCATGGGCGACCAAGGAGAAGGTGCACAAGGCC 360
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      AACTACTTTGGTTCCCTGACACAATCATCCACCATCAGGGTTGGGAGCTACAACGGGGAG 420
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      GAGATCTATGCGCCTTTTAAGAGCCTTGTACCCATGGTAAACCCAAACGACATCGTGTTC 480
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      GGTGGGTGGGACATCAGCAGCATGAACCTGGCCGACGCCATGACCAGGGCTCGGGTGCTG 540
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      GACATCGACCTGCAGAAGCAGCTCCGGCATCACATGGAGTCCATGGTGCCCCTCCCCGGC 600
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      GTCTACAACCCTGACTTCATCGCCGCCAACCAGGGCTCCCGCGCCAACAATGTCATCAAG 660
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      GGCACCAAGAAGGAGCAGGTCGAACAGGTCAAGAAGGACATCAGGGAGTTCAAGGAGAAG 720
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      AGCAAGGTGGACAAGGTGGTGGTGCTGTGGACGGCCAACACGGAGCGGTACAGCAACGTG 780
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      GTGGCCGGGATGAACGACACCATGGACAACCTGCTGGCGTCGCTGGACAAGGACGAGCCG 840
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      GAGATGTCGCCGTCGACGCTCTACGCCATCGCCTGCGTCATGGAGGGCGTCCCCTTCATC 900
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      AACGGCAGCCCCCAGAACACCTTCGTGCCCGGGCTGATCGAGCTCGCCATCAAGAAGAAC 960
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      TCGGTGATCGGCGGCGACGACTTCAAGAGTGGGCAGACCAAGATGAAGTCCGTCCTCGTC 1020
consensus_11111#1      -------------------------------------------TGCGAACATGACTCGCC 17
                                                                  **    *    **** *

consensus_11111#0      GACTTCCTCGTCGGCGCCG-GCATCAAGCCGACGTCGATCGCGAGCTACAACCACCTAGG 1079
consensus_11111#1      GGACCGAGCGTCCACACGAAGCACCGACCCCGCGCC-ACGACGTGCCGCACCC------- 69
                       *       ****  * *   *** * * **  ** * *   ** **  ** **       

consensus_11111#0      CAACAACGACGGCATGAACCTGTCGGCGCCGCAGACGTTCCGGTCCAAGGAGATCTCCAA 1139
consensus_11111#1      CGAGGACGCCGACATACACTTTCTATCGCGCCGTGCGAGAAAGTCGAACAGAAAACACAG 129
                       * *  *** ** ***  ** *     ***  *   **     *** **    *    ** 

consensus_11111#0      GAGCGGCGTCGTCGACGACATGGTCTCCAGCAACGCCATCCTCTACGAGCCCGGCGAGCA 1199
consensus_11111#1      GAG--------TCGATAAGAGGAGACACAG--------------ACGAGCC-GCCGAGA- 165
                       ***        ****  * * *     ***              ******* * ****  

consensus_11111#0      CCCCGACCACGTCATCGTCATCAAGTATATTCCATACGTTGGGGACAGCAAGAGGGCCAT 1259
consensus_11111#1      ----GAAGACCAGATGAGAATCGAG-GTGTCACCTGCTCCAGAGGCGGTGAGAAGGACAA 220
                           **  **   **    *** **  * *  * * *    * * * *  *** ** ** 

consensus_11111#0      GGACGAGTACACCTCGG-AGATCTTCATGGGAGGGAAGAACACCATCGTGCTGCA----C 1314
consensus_11111#1      ACCCCACAATACCCAACCAAAACATTATCCATTGGTAGCGTACCCGCACCCCGCATAACC 280
                          * *  * ***     * * * * **     ** **   ***  *   * ***    *

consensus_11111#0      AACACCTGCGAGGACTCGCTCCTCGCCGCGCCCATCATCCTCGACCTCGTCCTCCTCGCC 1374
consensus_11111#1      AACACCT-CGAAGAGGGGG----CAACATGGGCAGAACGGTGAGGAAGGACG-----AGG 330
                       ******* *** **   *     *  *  *  **  *   *       * *         

consensus_11111#0      GAGCTCAGCACCAGGATCCAGCTCAAAGCTGAAGACCAGGATAAGTACCATTCTTTCCAT 1434
consensus_11111#1      GAGGAGAACAACGATAACGAGCCCACCGACCCCCCCCGGGA--GCGACCATTCTCTC-AT 387
                       ***   * ** *   * * *** **  *       ** ***     ******** ** **

consensus_11111#0      CCAGTGGCTACCATCCT-GAGCTACCTCAGCAAGGCTCCTCTTGTTCCCCCAGGCACACC 1493
consensus_11111#1      GCAACGCGGTGGATCCTCGAACAACCTCATCGAGGCTGCTCTTGTTACTCAGAGCACGAC 447
                        **  *      ***** ** * ****** * ***** ******** * *   ****  *

consensus_11111#0      AGTGGTGAATGCACTGGCCAAGCAGAGGGCCATGCTGGAGAACATCCTGAGGGCCTGTGT 1553
consensus_11111#1      AATGGTGAATGCTCTGGCCAAGCAGAGGGCCATCCTGGAGAACATCCTGAGGGCCTGTGT 507
                       * ********** ******************** **************************

consensus_11111#0      TGGACTGGCCCCTGAGAACAACATGATGCTTGAGTACAAGTGATATAGGCCTTGACAGGT 1613
consensus_11111#1      TGGACTGGCCAATAAAAACAACATGATGCTTGAGTACAAGTGATATAGGCCTTGACAGGT 567
                       **********  * * ********************************************

consensus_11111#0      CCTCTTATCAGGAGGGATGATGAACAGCAAGTGGTGGAGGAAGGTGACAGTTTTCTTCAA 1673
consensus_11111#1      CCTCTTATCAGGAGGGATGATGAACAGCAAGTGGTGGAGGAAGGTGACAGTTTTCTTCCC 627
                       **********************************************************  

consensus_11111#0      CAAGAAAAAGAACAAAAAAAGAGAGAAAATGAGGAACACCTGAAAGAAATAACAAGAGGC 1733
consensus_11111#1      CAAGAAAAAAAAAAAAAAAA---------------------------------------- 647
                       ********* ** *******                                        

consensus_11111#0      CAAGTGGGGAAGCAAATGAAATGATCAAGTGATATTCATTCAGAAAATGGGTGTCATTCA 1793
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      CTTGGATCCTCTTAATTGGGGGCATCTATTGACAGTTTGACACTCTGCTCCATGATTTTT 1853
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      TTTTTCATTTTTTGTTTTTTTAATTGAGATGGAGACTTTTTTCAGCTCTGCTGCTAGTAT 1913
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      GCTGTGAGCTGCATGAACATTGGTTAATATTGTGTATGATGATAGGTGAAGCAAGGAACT 1973
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      AATCGTCTTCTATGCTTATGGATCTATAGTACAAGTTGTCAGTATTACTGTTAAGTCTTA 2033
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      TATCTGGAACACTTTGTGAATCAAAGAACAGCTTGGGGTCCTAGTCGTGGTATTTATGAG 2093
consensus_11111#1      ------------------------------------------------------------
                                                                                   

consensus_11111#0      GCCAGTGGTTCTGGTTATCAAAATGCAGCAATTTCCGTGGTTATTATCCGT 2144
consensus_11111#1      ---------------------------------------------------
                                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)