Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11114 cluster # 11114       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11114#0 length = 2291 sequences # 2  
consensus_11114#1 length = 1633 sequences # 6  

consensusID : consensus_11114#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2291
fasta sequence
                              [TCACCGTTCACGTTGAGTCCAGTCTGAGTTTGCTGCCGTTCATACGAGACCTCCAAGTTTGGTTCTTGTTCTAAGGTCTGTAACTTCTGCCATACATGATGTTGGTATGCATGGATATGACAATATGTGTCCTTTTGGAATTGACAATGATGACGAAGGGAGTGCATTTGACAAGTGTGAAATCACTAAGGCGCAAGAAAAAGGATAGTCATGGAGGAAAGAAGGGTAAGGT-CGGGATCCACATGGGAAGGGCAGAAGCAAAAAGAAAAATATAGCTGATAACACCTACGGTTTGCCGGCTCAGTTAACTGACCTGTCAGAACCTCGCATGAATAAACAGAGTGATCTTATTCCTGCTGCTGAACTTGTATTCAAGAACTCTTCTGCCGTATCTGTTGAATTACCTGCAGTTGTTGCTTGCAAAACTGATGGTGCATCTGTACCACCAGCACCTGCTTGGGTTTGTTGTGATGATTGCGAAAAATGGCGCTGCATACCAACTGAACTGGCAGATAAAATCTCAAAAGAAAATCTCAGATGGACTTGTAAGGAAAACGAAGATAAGACATTTGCCAATTGCTCTATACCACAAGAGAAGACAGATGATGAGATCAATGCAGAGCTTGGGCTTTCAGATGCTTCTGCTGATGAAGCTAATGGCGATGGATCAAACTCGAAAGCTTCTGGAGAACCAAACTTTGCACTTCTCAGGTCAAACTTGTTTCTACATCGTAACCGCAGGACACAATCCATTGATGAGAGCATGGTATGCAATTGTAAGCCGCCTCACGATGACCGAATGGGTTGTAGAGATGGTTGCTTGAACAGGATACTCAACATTGAATGCACCAAACGTACATGTCCATGTGGGGAGCACTGTTCCAATCAGCAGTTCCAAAGGCGCACCTATGCAAAACTTGGTAAGTTCCATACTGGTAAAAAGGGCTATGGATTGCAATTGAAGGAAGATGTATCTGAAGGACGATTCCTCATTGAATATGTTGGAGAGGTCCTTGATATAACGGCTTATGAATCCCGCCAAAGGTATTATGCCTCTAAAGGCCAGAAGCATTTCTATTTCATGGCACTTAATGGTGGTGAGGTGATAGATGCTTGTACTAAAGGAAACTTGGGCCGGTTCATCAATCATAGCTGCAGTCCTAATTGCCGTACAGAGAAGTGGATGGTCAATGGTGAAGTCTGCATTGGAATATTTGCTATGAGGAACATCAAGAAGGGTGAAGAATTGACGTTTGATTACAACTATGTTCGTGTATCTGGTGCTGCTCCTCAGAAATGCTTTTGCGGTACTGCCAAATGCCGGGGTTACATCGGTGGTGACATATCAGGTGCTGATATGATTACTCAAGATGATGCTGAAGCAGGGACTTTCGAACCTATGGCTGTTCAGGAGGATGCTGAGGAAGTACTTGGTGCAAATGGTTTGTCCTCTCATGGCACACATCTAGATATTGTCGACCATGAAGCTTCCTCTAAAACAGAAGATTCAAATGATTGCCCATCTGTGAACCCACCAGAGTTAGAATCTGAGCAACAAACTTCAGGAACCTTATTTGACACAAGTGAGCCAGAAAATTCCTTAGAAGCATTGAGCCCACAGGATGATGAAGATGTCGTCCGCACACCTGTCCATGTGTCCCGGACAGTTGAGAGTACGTCGCGGCAGTTTCCAGGATATGGTACTCGGTCATCAGAAATTTTGCAAAGGGCTCCATGCACACTGGATGGACCAAAGGTTCCAAGCACGACAAATGGAATTCCGCCTAGTTCCGATTTGGGGAGCCACTGGGTACCAGGTTTCCACGCTAATAAGAAAACCAATGTAAAACATCATTTGATTCTGAATCCATCATCAGCTCCTATTGACAGTGAGCACATTTTGGGAGTTGAAGGAAGATTGAACAGCTTGCTTGATGTAAATGGAGGTATTAGCAAACGAAAAGACGCAACAAATGGATACTTGAAGCTTCTCCTTGTGGCTGCAGCGGAAGGTGACAATGCTGGGGGCACGTCTAAAAGTGTAAGGGATCTTTCGTTAATTCTTGATGCACTTCTGAAAACAAGATCCAATTCTGTCCTGTTGGATATCATCAATAAGAATGGACTGCAAATGCTTCACAATATATTAAAGCAGAATAAAAGCGATTTCCATAGGATACCTATAATAAGAAAGCTTGTGAAGGTTTGCATTTCTTTTTTATGTTATGTCTTATTACATTAGTTTCCAATTAATATATCACATTAGAGCAAGTACATCCCTTAACAACTGA]

[+] EMBL BI802104             [TCACCGTTCACGTTGAGTCCAGTCTGAGTTTGCTGCCGTTCATACGAGACCTCCAAGTTTGGTTCTTGTTCTAAGGTCTGTAACTTCTGCCATACATGATGTTGGTATGCATGGATATGACAATATGTGTCCTTTTGGAATTGACAATGATGACGAAGGGAGTGCATTTGACAAGTGTGAAATCACTAAGGCGCAAGAAAAAGGATAGTCATGGAGGAAAGAAGGGTAAGGT CGGGATCCACATGGGAAGGGCAGAAGCAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK064575             [                                                                                                                                                                                                                       GGAAAGAAGGGTAAGGTGCGGGATCCACATGGGAAGGGCAGAAGCAAGAAGAAAAATATAGCTGATAACACCTACGGTTTGCCGGCTCAGTTAACTGACCTGTCAGAACCTCGCATGAATAAACAGAGTGATCTTATTCCTGCTGCTGAACTTGTATTCAAGAACTCTTCTGCCGTATCTGTTGAATTACCTGCAGTTGTTGCTTGCAAAACTGATGGTGCATCTGTACCACCAGCACCTGCTTGGGTTTGTTGTGATGATTGCGAAAAATGGCGCTGCATACCAACTGAACTGGCAGATAAAATCTCAAAAGAAAATCTCAGATGGACTTGTAAGGAAAACGAAGATAAGACATTTGCCAATTGCTCTATACCACAAGAGAAGACAGATGATGAGATCAATGCAGAGCTTGGGCTTTCAGATGCTTCTGCTGATGAAGCTAATGGCGATGGATCAAACTCGAAAGCTTCTGGAGAACCAAACTTTGCACTTCTCAGGTCAAACTTGTTTCTACATCGTAACCGCAGGACACAATCCATTGATGAGAGCATGGTATGCAATTGTAAGCCGCCTCACGATGACCGAATGGGTTGTAGAGATGGTTGCTTGAACAGGATACTCAACATTGAATGCACCAAACGTACATGTCCATGTGGGGAGCACTGTTCCAATCAGCAGTTCCAAAGGCGCACCTATGCAAAACTTGGTAAGTTCCATACTGGTAAAAAGGGCTATGGATTGCAATTGAAGGAAGATGTATCTGAAGGACGATTCCTCATTGAATATGTTGGAGAGGTCCTTGATATAACGGCTTATGAATCCCGCCAAAGGTATTATGCCTCTAAAGGCCAGAAGCATTTCTATTTCATGGCACTTAATGGTGGTGAGGTGATAGATGCTTGTACTAAAGGAAACTTGGGCCGGTTCATCAATCATAGCTGCAGTCCTAATTGCCGTACAGAGAAGTGGATGGTCAATGGTGAAGTCTGCATTGGAATATTTGCTATGAGGAACATCAAGAAGGGTGAAGAATTGACGTTTGATTACAACTATGTTCGTGTATCTGGTGCTGCTCCTCAGAAATGCTTTTGCGGTACTGCCAAATGCCGGGGTTACATCGGTGGTGACATATCAGGTGCTGATATGATTACTCAAGATGATGCTGAAGCAGGGACTTTCGAACCTATGGCTGTTCAGGAGGATGCTGAGGAAGTACTTGGTGCAAATGGTTTGTCCTCTCATGGCACACATCTAGATATTGTCGACCATGAAGCTTCCTCTAAAACAGAAGATTCAAATGATTGCCCATCTGTGAACCCACCAGAGTTAGAATCTGAGCAACAAACTTCAGGAACCTTATTTGACACAAGTGAGCCAGAAAATTCCTTAGAAGCATTGAGCCCACAGGATGATGAAGATGTCGTCCGCACACCTGTCCATGTGTCCCGGACAGTTGAGAGTACGTCGCGGCAGTTTCCAGGATATGGTACTCGGTCATCAGAAATTTTGCAAAGGGCTCCATGCACACTGGATGGACCAAAGGTTCCAAGCACGACAAATGGAATTCCGCCTAGTTCCGATTTGGGGAGCCACTGGGTACCAGGTTTCCACGCTAATAAGAAAACCAATGTAAAACATCATTTGATTCTGAATCCATCATCAGCTCCTATTGACAGTGAGCACATTTTGGGAGTTGAAGGAAGATTGAACAGCTTGCTTGATGTAAATGGAGGTATTAGCAAACGAAAAGACGCAACAAATGGATACTTGAAGCTTCTCCTTGTGGCTGCAGCGGAAGGTGACAATGCTGGGGGCACGTCTAAAAGTGTAAGGGATCTTTCGTTAATTCTTGATGCACTTCTGAAAACAAGATCCAATTCTGTCCTGTTGGATATCATCAATAAGAATGGACTGCAAATGCTTCACAATATATTAAAGCAGAATAAAAGCGATTTCCATAGGATACCTATAATAAGAAAGCTTGTGAAGGTTTGCATTTCTTTTTTATGTTATGTCTTATTACATTAGTTTCCAATTAATATATCACATTAGAGCAAGTACATCCCTTAACAACTGA]


>consensus_11114#0 TCACCGTTCACGTTGAGTCCAGTCTGAGTTTGCTGCCGTTCATACGAGACCTCCAAGTTT GGTTCTTGTTCTAAGGTCTGTAACTTCTGCCATACATGATGTTGGTATGCATGGATATGA CAATATGTGTCCTTTTGGAATTGACAATGATGACGAAGGGAGTGCATTTGACAAGTGTGA AATCACTAAGGCGCAAGAAAAAGGATAGTCATGGAGGAAAGAAGGGTAAGGTCGGGATCC ACATGGGAAGGGCAGAAGCAAAAAGAAAAATATAGCTGATAACACCTACGGTTTGCCGGC TCAGTTAACTGACCTGTCAGAACCTCGCATGAATAAACAGAGTGATCTTATTCCTGCTGC TGAACTTGTATTCAAGAACTCTTCTGCCGTATCTGTTGAATTACCTGCAGTTGTTGCTTG CAAAACTGATGGTGCATCTGTACCACCAGCACCTGCTTGGGTTTGTTGTGATGATTGCGA AAAATGGCGCTGCATACCAACTGAACTGGCAGATAAAATCTCAAAAGAAAATCTCAGATG GACTTGTAAGGAAAACGAAGATAAGACATTTGCCAATTGCTCTATACCACAAGAGAAGAC AGATGATGAGATCAATGCAGAGCTTGGGCTTTCAGATGCTTCTGCTGATGAAGCTAATGG CGATGGATCAAACTCGAAAGCTTCTGGAGAACCAAACTTTGCACTTCTCAGGTCAAACTT GTTTCTACATCGTAACCGCAGGACACAATCCATTGATGAGAGCATGGTATGCAATTGTAA GCCGCCTCACGATGACCGAATGGGTTGTAGAGATGGTTGCTTGAACAGGATACTCAACAT TGAATGCACCAAACGTACATGTCCATGTGGGGAGCACTGTTCCAATCAGCAGTTCCAAAG GCGCACCTATGCAAAACTTGGTAAGTTCCATACTGGTAAAAAGGGCTATGGATTGCAATT GAAGGAAGATGTATCTGAAGGACGATTCCTCATTGAATATGTTGGAGAGGTCCTTGATAT AACGGCTTATGAATCCCGCCAAAGGTATTATGCCTCTAAAGGCCAGAAGCATTTCTATTT CATGGCACTTAATGGTGGTGAGGTGATAGATGCTTGTACTAAAGGAAACTTGGGCCGGTT CATCAATCATAGCTGCAGTCCTAATTGCCGTACAGAGAAGTGGATGGTCAATGGTGAAGT CTGCATTGGAATATTTGCTATGAGGAACATCAAGAAGGGTGAAGAATTGACGTTTGATTA CAACTATGTTCGTGTATCTGGTGCTGCTCCTCAGAAATGCTTTTGCGGTACTGCCAAATG CCGGGGTTACATCGGTGGTGACATATCAGGTGCTGATATGATTACTCAAGATGATGCTGA AGCAGGGACTTTCGAACCTATGGCTGTTCAGGAGGATGCTGAGGAAGTACTTGGTGCAAA TGGTTTGTCCTCTCATGGCACACATCTAGATATTGTCGACCATGAAGCTTCCTCTAAAAC AGAAGATTCAAATGATTGCCCATCTGTGAACCCACCAGAGTTAGAATCTGAGCAACAAAC TTCAGGAACCTTATTTGACACAAGTGAGCCAGAAAATTCCTTAGAAGCATTGAGCCCACA GGATGATGAAGATGTCGTCCGCACACCTGTCCATGTGTCCCGGACAGTTGAGAGTACGTC GCGGCAGTTTCCAGGATATGGTACTCGGTCATCAGAAATTTTGCAAAGGGCTCCATGCAC ACTGGATGGACCAAAGGTTCCAAGCACGACAAATGGAATTCCGCCTAGTTCCGATTTGGG GAGCCACTGGGTACCAGGTTTCCACGCTAATAAGAAAACCAATGTAAAACATCATTTGAT TCTGAATCCATCATCAGCTCCTATTGACAGTGAGCACATTTTGGGAGTTGAAGGAAGATT GAACAGCTTGCTTGATGTAAATGGAGGTATTAGCAAACGAAAAGACGCAACAAATGGATA CTTGAAGCTTCTCCTTGTGGCTGCAGCGGAAGGTGACAATGCTGGGGGCACGTCTAAAAG TGTAAGGGATCTTTCGTTAATTCTTGATGCACTTCTGAAAACAAGATCCAATTCTGTCCT GTTGGATATCATCAATAAGAATGGACTGCAAATGCTTCACAATATATTAAAGCAGAATAA AAGCGATTTCCATAGGATACCTATAATAAGAAAGCTTGTGAAGGTTTGCATTTCTTTTTT ATGTTATGTCTTATTACATTAGTTTCCAATTAATATATCACATTAGAGCAAGTACATCCC TTAACAACTGA



consensusID : consensus_11114#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1633
fasta sequence
                              [CATCAGCTCCTATTGACAGTGAGCACATTTTGGGAGTTGAAGGAAGATTGAACAGCTTGCTTGATGTAAATGGAGGTATTAGCAAACGAAAAGACGCAACAAATGGATACTTGAAGCTTCTCCTTGTGACTGCAGCGGAAGGTGACAATGCTGGGGGCACGTCTAAAAGTGTAAGGGATCTTTCGTTAATTCTTGATGCACTTCTGAAAACAAGATCCAATTCTGTCCTGTTGGATATCATCAATAAGAATGGACTGCAAATGCTTCACAATATATTAAAGCAGAATAAAAGCGATTTCCATAGGATACCTATAATAAGAAAGCTTGTGAAGGTACTTGAGTTTCTAGCTTCCAAGGGCATTCTGACATCTGAACATATAAATGGTGGTCCTCGATGTGCTGGGACAGAAAGCTTCAGGGAGTCGATGTTGGGCTTGTTAAGGCATAATGATATGCAGGTTCAACAGATTGCTCGGAACTTTCGTGATAGATGGATCCAATGGGCCCCTCGAAATATTTCAAGAAATGAGCCAACAGAATATTCACGTGCATCCATATCTGCACACGATATTCATGTCATTTCAACAGCTGGTGGATCTTTTCCAACTTCAGCCAACACTATGGATTGGAAATCCATCAGAAGAAAACGCAAGAGCCGTTGGGATTACCAACCAGATGACCACTATAAAATGGGTGGCCTGAAAATTCAGAAAGTTTGTCCTGTACAAAGTGAGTTTCGGACTGGCTCGGTGGGAAATAAGTTGCATGGTAATTGGGGAACGAACAGCTCCCACAATGATGTTCCTGTGGTGGGAAGTTCAGCCGATGGTGCAGATGATGAAGCACCTCCTGGATTTGAGTCTCAGCAGGAAAGTCGGCCTGGACAAGCTTGTTTAGAATCGGGGGTTTCTCCAGGATTATACTTGGAGAGGTATCAACATAACTTGACTATTTCATACGGGATTCCAATCGCTTTTGTTGAGCATTTTGGAACCCCAGAAGTTGAAGGAGGGCCATGTCGCAAAAACTGGAAAGTCGCACCTGGTGTGCCTTTCCAGCCCTTTCCACCATTGCCGCCCTATCCAAGAGGGAGTCCTTGTCCTTCCACTCAGATGTCTCAGCATGAACACAACAGTTTGGGACATTGTGGCAGGGCTGCAAATAGAGACGGGAGAATACATAGGAATTGGAGAAATGGGGCGAGAACAAAATTTCCATACAATCATCAAGGACGGAGATTTCCTAACAATAATCAAAGATTTTGAAAGTTGCCTGCTGCCTCCAACGTCTCAGGAGCAGGGTGATCCAGGACCTAGAGGCAGGGAGTGACCCAAGTCCTGGTTTTTGAACCTCAAATAGTGGTTTATACATTGTAGTTCCTGTTTATCAGAGCCCCAGAGGTGTATCAGAATTGCGTGCGCCCGTAATTCTATTTAATAGGAGCAGATGTTACTGTCAGTTTATTAGAGGTAGAAACATATTCTGCAAATAGGTCATTGCCTTTGCGGTTCTTTTACTAATTAATTTGCCCATTGGCTCCCTCTGCGCTATGTGTAATCCCGATAGGAATAATTGATTTGATTCAAATCGTTTTACAGGCAAAATGGCTAATTGGTTTCAAAAAAAAAAAAGA]

[+] EMBL AK106534             [CATCAGCTCCTATTGACAGTGAGCACATTTTGGGAGTTGAAGGAAGATTGAACAGCTTGCTTGATGTAAATGGAGGTATTAGCAAACGAAAAGACGCAACAAATGGATACTTGAAGCTTCTCCTTGTGACTGCAGCGGAAGGTGACAATGCTGGGGGCACGTCTAAAAGTGTAAGGGATCTTTCGTTAATTCTTGATGCACTTCTGAAAACAAGATCCAATTCTGTCCTGTTGGATATCATCAATAAGAATGGACTGCAAATGCTTCACAATATATTAAAGCAGAATAAAAGCGATTTCCATAGGATACCTATAATAAGAAAGCTTGTGAAGGTACTTGAGTTTCTAGCTTCCAAGGGCATTCTGACATCTGAACATATAAATGGTGGTCCTCGATGTGCTGGGACAGAAAGCTTCAGGGAGTCGATGTTGGGCTTGTTAAGGCATAATGATATGCAGGTTCAACAGATTGCTCGGAACTTTCGTGATAGATGGATCCAATGGGCCCCTCGAAATATTTCAAGAAATGAGCCAACAGAATATTCACGTGCATCCATATCTGCACACGATATTCATGTCATTTCAACAGCTGGTGGATCTTTTCCAACTTCAGCCAACACTATGGATTGGAAATCCATCAGAAGAAAACGCAAGAGCCGTTGGGATTACCAACCAGATGACCACTATAAAATGGGTGGCCTGAAAATTCAGAAAGTTTGTCCTGTACAAAGTGAGTTTCGGACTGGCTCGGTGGGAAATAAGTTGCATGGTAATTGGGGAACGAACAGCTCCCACAATGATGTTCCTGTGGTGGGAAGTTCAGCCGATGGTGCAGATGATGAAGCACCTCCTGGATTTGAGTCTCAGCAGGAAAGTCGGCCTGGACAAGCTTGTTTAGAATCGGGGGTTTCTCCAGGATTATACTTGGAGAGGTATCAACATAACTTGACTATTTCATACGGGATTCCAATCGCTTTTGTTGAGCATTTTGGAACCCCAGAAGTTGAAGGAGGGCCATGTCGCAAAAACTGGAAAGTCGCACCTGGTGTGCCTTTCCAGCCCTTTCCACCATTGCCGCCCTATCCAAGAGGGAGTCCTTGTCCTTCCACTCAGATGTCTCAGCATGAACACAACAGTTTGGGACATTGTGGCAGGGCTGCAAATAGAGACGGGAGAATACATAGGAATTGGAGAAATGGGGCGAGAACAAAATTTCCATACAATCATCAAGGACGGAGATTTCCTAACAATAATCAAAGATTTTGAAAGTTGCCTGCTGCCTCCAACGTCTCAGGAGCAGGGTGATCCAGGACCTAGAGGCAGGGAGTGACCCAAGTCCTGGTTTTTGAACCTCAAATAGTGGTTTATACATTGTAGTTCCTGTTTATCAGAGCCCCAGAGGTGTATCAGAATTGCGTGCGCCCGTAATTCTATTTAATAGGAGCAGATGTTACTGTCAGTTTATTAGAGGTAGAAACATATTCTGCAAATAGGTCATTGCCTTTGCGGTTCTTTTACTAATTAATTTGCCCATTGGCTCCCTCTGCGCTATGTGTAATCCC ATAGGAATAATTGATTTGATTCAAATCGTTTTACAGGCAAAACGGCT                        ]
[+] EMBL CB643338             [                                                                                                                      TCTCCTTGTGACTGCAGCGGAAGGTGACAATGCTGGGGGCACGTCTAAAAGTGTAAGGGATCTTTCGTTAATTCTTGATGCACTTCTGAAAACAAGATCCAATTCTGTCCTGTTGGATATCATCAATAAGAATGGACTGCAAATGCTTCACAATATATTAAAGCAGAATAAAAGCGATTTCCATAGGATACCTATAATAAGAAAGCTTGTGAAGGTACTTGAGTTTCTAGCTTCCAAGGGCATTCTGACATCTGAACATATAAATGGTGGTCCTCGATGTGCTGGGACAGAAAGCTTCAGGGAGTCGATGTTGGGCTTGTTAAGGCATAATGATATGCAGGTTCAACAGATTGCTCGGAACTTTCGTGATAGATGGATCCAATGGGCCCCTCGAAATATTTCAAGAAATGAGCCAACAGAATATTCACGTGCATCCATATCTGCACACGATATTCATGTCATTTCAACAGCTGGTGGATCTTTTCCAACTTCAGCCAACACTATGGATTGGAAATCCATCAGAAGAAAACGCAAGAGCCGTTGGGATTACCAACCAGATGACCACTATAAAATGGGTGGCCTGAAAATTCAGAAAGTTTGTCCTGTACAAAGTGAGTTTCGGACTGGCTCGGTGGGAAATAAGTTGCATGGTAATTGGGGAACGAACAGCTCCCACAATGATGTTCCTGTGGTGGGAAGTTCAGCCGATGGTGCAGATGATGAAGCACCTCCTGGATTTGAGTCTCAGCAGGAAAGTCGGCCTGGACAAGCTTGTTTAGAATCGGGGGTTTCTCCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB643339             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTGGT GGAAGTTCAGCCGATGGTGCAGATGATGAAGCACCTCCTGGATTTGAGTCTCAGCAGGAAAGTCGGCCTGGACAAGCTTGTTTAGAATCGGGGGTTTCTCCAGGATTATACTTGGAGAGGTATCAACATAACTTGACTATTTCATACGGGATTCCAATCGCTTTTGTTGAGCATTTTGGAACCCCAGAAGTTGAAGGAGGGCCATGTCGCAAAAACTGGAAAGTCGCACCTGGTGTGCCTTTCCAGCCCTTTCCACCATTGCCGCCCTATCCAAGAGGGAGTCCTTGTCCTTCCACTCAGATGTCTCAGCATGAACACAACAGTTTGGGACATTGTGGCAGGGCTGCAAATAGAGACGGGAGAATACATAGGAATTGGAGAAATGGGGCGAGAACAAAATTTCCATACAATCATCAAGGACGGAGATTTCCTAACAATAATCAAAGATTTTGAAAGTTGCCTGCTGCCTCCAACGTCTCAGGAGCAGGGTGATCCAGGACCTAGAGGCAGGGAGTGACCCAAGTCCTGGTTTTTGAACCTCAAATAGTGGTTTATACATTGTAGTTCCTGTTTATCAGAGCCCCAGAGGTGTATCAGAATTGCGTGCGCCCGTAATTCTATTTAATAGGAGCAGATGTTACTGTCAGTTTATTAGAGGTAGAAACATATTCTGCAAATAGGTCATTGCCTTTGCGGTTCTTTTACTAATTAATTTGCCCATTGGCTCCCTCTGCGCTATGTGTAATCCCGATAGGAATAATTGATTTGATTCAAATCGTTTTACAGGCAAAATGGCTAATTGGTTTCAAAAAAAAAAAAGA]
[-] EMBL CF332072             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CATCAAGGACGGAGATTTCCTAACAATAATCAAAGATTTTGAAAGTTGCCTGCTGCCTCCAACGTCTCAGGAGCAGGGTGATCCAGGACCTAGAGGCAGGGAGTGACCCAAGTCCTGGTTTTTGAACCTCAAATAGTGGTTTATACATTGTAGTTCCTGTTTATCAGAGCCCCAGAGGTGTATCAGAATTGCGTGCGCCCGTAATTCTATTTAATAGGAGCAGATGTTACTGTCAGTTTATTAGAGGTAGAAACATATTCTGCAAATAGGTCATTGCCTTTGCGGTTCTTTTACTAATTAATTTGCCCATTGGCTCCCTCTGCGCTATGTGTAATCCCGATAGGAATAATTGATTTGATTCAAATCGTTTTACAGGCAAAATGGCTAATTGGTTTCAAAAAAAAAA    ]
[+] EMBL CF332073             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTTTGAAAGTTGCCTGCTGCCTCCAACGTCTCAGGAGCAGGGTGATCCAGGACCTAGAGGCAGGGAGTGACCCAAGTCCTGGTTTTTGAACCTCAAATAGTGGTTTATACATTGTATTTTCTGTTTATCAGAGCCCCAGAGGTGTATCAGAATTGCGTGTTCTCTTAATTCTATTTAATAGGAGCAGATGTTACTGTCAGTTTATTAGAGGTAGAAACATATTCTGCAAATAGGTCATTGCCTTTGCGGTTCTTTTACTAATTAATTTGCCCATTGGCTCCCTCTGCGCTATGTGTAATCCCGATAGGAATAATTGATTTGATTCAAATCGTTTTACAGGCAAAATGGCTAATTGGTTTCAAAAAAAAA     ]
[+] EMBL CF308673             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTTGAACCT AAATAGTGG TTATACATTGTAGTTCCTGTTTATCAGAGCCCCAGAGGTGTATCAGAATTGCGTGCGCCCGTAATTCTATTTAATAGGAGCAGATGTTACTGTCAGTTTATTAGAGGTAGAAACATATTCTGCAAATAGGTCATTGCCTTTGCGGTTCTTTTACTAATTAATTTGCCCATTGGCTCCCTCTGCGCTATGTGTAATCCCGATAGGAATAATTGATTTGATTCAAATCGTTTTACAGGCAAAATGGCTAATTGGTTTCAAAAAc        ]


>consensus_11114#1 CATCAGCTCCTATTGACAGTGAGCACATTTTGGGAGTTGAAGGAAGATTGAACAGCTTGC TTGATGTAAATGGAGGTATTAGCAAACGAAAAGACGCAACAAATGGATACTTGAAGCTTC TCCTTGTGACTGCAGCGGAAGGTGACAATGCTGGGGGCACGTCTAAAAGTGTAAGGGATC TTTCGTTAATTCTTGATGCACTTCTGAAAACAAGATCCAATTCTGTCCTGTTGGATATCA TCAATAAGAATGGACTGCAAATGCTTCACAATATATTAAAGCAGAATAAAAGCGATTTCC ATAGGATACCTATAATAAGAAAGCTTGTGAAGGTACTTGAGTTTCTAGCTTCCAAGGGCA TTCTGACATCTGAACATATAAATGGTGGTCCTCGATGTGCTGGGACAGAAAGCTTCAGGG AGTCGATGTTGGGCTTGTTAAGGCATAATGATATGCAGGTTCAACAGATTGCTCGGAACT TTCGTGATAGATGGATCCAATGGGCCCCTCGAAATATTTCAAGAAATGAGCCAACAGAAT ATTCACGTGCATCCATATCTGCACACGATATTCATGTCATTTCAACAGCTGGTGGATCTT TTCCAACTTCAGCCAACACTATGGATTGGAAATCCATCAGAAGAAAACGCAAGAGCCGTT GGGATTACCAACCAGATGACCACTATAAAATGGGTGGCCTGAAAATTCAGAAAGTTTGTC CTGTACAAAGTGAGTTTCGGACTGGCTCGGTGGGAAATAAGTTGCATGGTAATTGGGGAA CGAACAGCTCCCACAATGATGTTCCTGTGGTGGGAAGTTCAGCCGATGGTGCAGATGATG AAGCACCTCCTGGATTTGAGTCTCAGCAGGAAAGTCGGCCTGGACAAGCTTGTTTAGAAT CGGGGGTTTCTCCAGGATTATACTTGGAGAGGTATCAACATAACTTGACTATTTCATACG GGATTCCAATCGCTTTTGTTGAGCATTTTGGAACCCCAGAAGTTGAAGGAGGGCCATGTC GCAAAAACTGGAAAGTCGCACCTGGTGTGCCTTTCCAGCCCTTTCCACCATTGCCGCCCT ATCCAAGAGGGAGTCCTTGTCCTTCCACTCAGATGTCTCAGCATGAACACAACAGTTTGG GACATTGTGGCAGGGCTGCAAATAGAGACGGGAGAATACATAGGAATTGGAGAAATGGGG CGAGAACAAAATTTCCATACAATCATCAAGGACGGAGATTTCCTAACAATAATCAAAGAT TTTGAAAGTTGCCTGCTGCCTCCAACGTCTCAGGAGCAGGGTGATCCAGGACCTAGAGGC AGGGAGTGACCCAAGTCCTGGTTTTTGAACCTCAAATAGTGGTTTATACATTGTAGTTCC TGTTTATCAGAGCCCCAGAGGTGTATCAGAATTGCGTGCGCCCGTAATTCTATTTAATAG GAGCAGATGTTACTGTCAGTTTATTAGAGGTAGAAACATATTCTGCAAATAGGTCATTGC CTTTGCGGTTCTTTTACTAATTAATTTGCCCATTGGCTCCCTCTGCGCTATGTGTAATCC CGATAGGAATAATTGATTTGATTCAAATCGTTTTACAGGCAAAATGGCTAATTGGTTTCA AAAAAAAAAAAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11114#0      TCACCGTTCACGTTGAGTCCAGTCTGAGTTTGCTGCCGTTCATACGAGACCTCCAAGTTT 60
consensus_11114#1      ------------------------------------------------------------
                                                                                   

consensus_11114#0      GGTTCTTGTTCTAAGGTCTGTAACTTCTGCCATACATGATGTTGGTATGCATGGATATGA 120
consensus_11114#1      ------------------------------------------------------------
                                                                                   

consensus_11114#0      CAATATGTGTCCTTTTGGAATTGACAATGATGACGAAGGGAGTGCATTTGACAAGTGTGA 180
consensus_11114#1      ------------------------------------------------------------
                                                                                   

consensus_11114#0      AATCACTAAGGCGCAAGAAAAAGGATAGTCATGGAGGAAAGAAGGGTAAGGTCGGGATCC 240
consensus_11114#1      ------------------------------------------------------------
                                                                                   

consensus_11114#0      ACATGGGAAGGGCAGAAGCAAAAAGAAAAATATAGCTGATAACACCTACGGTTTGCCGGC 300
consensus_11114#1      ------------------------------------------------------------
                                                                                   

consensus_11114#0      TCAGTTAACTGACCTGTCAGAACCTCGCATGAATAAACAGAGTGATCTTATTCCTGCTGC 360
consensus_11114#1      -----------------CATCAGCTCCTATTGACA------GTGAGCACATTTTGGGAGT 37
                                        **  * ***  **  * *      **** *  ***   *  * 

consensus_11114#0      TGAACTTGTATTCAAGAACTCTTCTGCCGTATCTGTTGAATTACCTGCAGTTGTTGCTTG 420
consensus_11114#1      TGAAGGAAGATTGAACAGCTTGCTTGATGTAAATG--GAGGTATTAGCAAACG------- 88
                       ****     *** ** * **    **  ***  **  **  **   ***   *       

consensus_11114#0      CAAAACTGATGGTGCATCTGTACCACCAGCACCTGCTTGGGTTTGTTGTGATGATTGCGA 480
consensus_11114#1      -AAAAGACGCAACAAATGGATACTTGAAGCTTCTCCTTGTGACTGCAGCGGAAGGTGACA 147
                        ****          **   ***    ***  ** **** *  **  * *     **  *

consensus_11114#0      AAAATGGCGCTGCATACCAACTGAACTGGCAGATAAAATCTCAAAAGAAAATCTCAGATG 540
consensus_11114#1      ATGCTGGGGGCACGT-----CTAAAAGTGTAAGGGATCTTTC----GTTAATTCTTGATG 198
                       *   *** *   * *     ** **   * *    *  * **    *  ***    ****

consensus_11114#0      GACTTGTAAGGAAAACGAAGATAAGACATTTGCCAATTGCTCTATACCACAAGAGAAGAC 600
consensus_11114#1      CACTTCT---GAAAAC-AAGATCCAAT-TCTGTC--CTGTTGGATATCATCAATAAGAAT 251
                        **** *   ****** *****   *  * ** *   ** *  *** **  *   *  * 

consensus_11114#0      AGATGATGAGATCAATGCAGAGCTTGGGCTTTCAGATGCTTCTGCTGATGAAGCTAATGG 660
consensus_11114#1      GGAC--TGCAAATGCTTCACAATATA-----TTAAAGCAGAATAAAAGCGATTTCCATAG 304
                        **   **  *    * ** *   *      * * *      *      **     ** *

consensus_11114#0      CGATGGATCAAACTCGAAAGCTTCTGGAG--AACCAAACTTTGCACTTCTCAGGTCAAAC 718
consensus_11114#1      -GATACCTATAATAAGAAAGCTTGTGAAGGTACTTGAGTTTCTAGCTTCCAAGGGCATTC 363
                        ***   *  **   ******** ** **  *    *  **    ****  *** **  *

consensus_11114#0      TTGTTTCT--ACATCGTAACCGCAGGACACAATCCATTGATG-AGAGCATGGTATGCAAT 775
consensus_11114#1      TGACATCTGAACATATAAATGGTGGTCCTCGATGTGCTGGGACAGAAAGCTTCAGGGAGT 423
                       *    ***  ****   **  *  *  * * **    **    ***       * * * *

consensus_11114#0      TGTAAGCCGCCTCACGATGACCGAATGGGTTGTAGAGATGGTTGCTTGAACAGGATACTC 835
consensus_11114#1      CGATGTTGGGCTTGTTAAGGCATAATGATATGCAGG---------TTCAACAGATTGCTC 474
                        *      * **    * * *  ****   ** **          ** *****  * ***

consensus_11114#0      AACATTGAATGCACCAAACGTACATGTCCATGTGGGGAGCACTGTTCCAATCAGCAGTTC 895
consensus_11114#1      G-----GAACTTTCGTGATAGATGGATCCA-ATGGG-----CCCCTCGAA---ATATTTC 520
                             ***    *   *   *    ****  ****     *   ** **     * ***

consensus_11114#0      CAAAGGCGCACCTATGCAAAACTTGGTAAGTTCCATACTGGTAAAAAGGGCT-ATGG-AT 953
consensus_11114#1      AAGAAATGAGCCAACAGAATATTCACGTGCATCCATATCTGCACACGATATTCATGTCAT 580
                        * *   *  ** *   ** * *        ******   * * *      * ***  **

consensus_11114#0      TGCAATTGAAGGAAGATGTATCTGAAGGACGATTCCTCATTGAATATGTTGGAGAGGTCC 1013
consensus_11114#1      TTCAACAGCTGGTGGATCTTTTCCAACTTCAGC-CAACACT--ATGGATTGGAAA--TCC 635
                       * ***  *  **  *** * *   **   *    *  ** *  **   ***** *  ***

consensus_11114#0      TTGATATAACGGCTTATGAATCCCGCCAAAGGTATTATGCCTCTAAAGGCCAGAAGCATT 1073
consensus_11114#1      ATCAGAAGAAAACGCAAGA-----GCCGTTGGGATTACCAACCAGATGACCACTA----- 685
                        * * *  *   *  * **     ***   ** ****     *  * * ***  *     

consensus_11114#0      TCTATTTCATGGCACTTAATGGTGGTGAGGTGATAGATGCTTGTACTAAAGGAAACTTGG 1133
consensus_11114#1      TAAAATGGGTGGCCTGAAAATTCAGAAAGTTTGT-----CCTGTACAAAGTGAGTTTCGG 740
                       *  * *   ****    **     *  ** *  *     * ***** **  **   * **

consensus_11114#0      GCCGGTTCA-TCAATCATAGCTGCAGTCCTAATTGCCGTACAGAGAAGTGGATGGTCAAT 1192
consensus_11114#1      ACTGGCTCGGTGGGAAATAAGTTGCATGGTAATTGGGGAACGAACAGCT---CCCACAAT 797
                        * ** **  *     ***  *    *  ******  * **  * *  *       ****

consensus_11114#0      GGTGAAGTCTGCATTGGAATATTTGCTATGAGGAACATCAAGAAGGGTGAAGAATTGACG 1252
consensus_11114#1      GATGTT-CCTGTGGTGGGAAGTTCAGCCGATGGTGCA--GATGATGAAGCACCTCCTGGA 854
                       * **    ***   *** *  **        **  **   *  * *  * *         

consensus_11114#0      TTTGATTACAACTATGTTCGTGTATCTGGTGCTGCTCCTCAGAAATGCTTTTGCGGTACT 1312
consensus_11114#1      TTTGAGTCTCAGCAGGAAAGTCGGCCTGGACAAGCTTGTTTAGAAT-------CGGGGGT 907
                       ***** *   *  * *   **    ****    ***  *    ***       ***   *

consensus_11114#0      GCCAAATGCCGGGGTTACATCGGTGGTGACATATCAGGTGCTGATATGATTACTCAAGAT 1372
consensus_11114#1      TTCT----CCAGGATTATACT--TGGAGAGGTATCAAC--ATAACTTGACTATTTCATAC 959
                         *     ** ** *** *    *** **  *****     * *  *** ** *  * * 

consensus_11114#0      GATGCTGAAGCAGGGACTTTCGAACCTATGGCTGTTCAGGAGGATGCTGAGGAAGTACTT 1432
consensus_11114#1      GGGATTCCAATCGCTTTTGTTGAGCATTTTGGAACCCCAGAAGTTGAAGGAGGGCCATGT 1019
                       *    *  *   *    * * ** * * * *     *  ** * **  *  *    *  *

consensus_11114#0      GGTGCAAATGGTTTGTCCTCTCATGGCACACATCTAGA-TATTGTCGACCATGAAGCTTC 1491
consensus_11114#1      CGCAAAAACTGGAAAGTCGCACCTGGTGTGCCTTTCCAGCCCTTTCCACCATTGC-CGCC 1078
                        *   ***  *      * * * ***    * * *  *    * ** *****    *  *

consensus_11114#0      CTCTAAAACAGAAGATTCAAATGATTGCCCATCTGTGAACCCACCAGAGTTAGAATCTGA 1551
consensus_11114#1      CTATCCAAGAGGGAGTCC------TTGTCCTTCC----ACTCAGATGTCTCAGCATGAAC 1128
                       ** *  ** **    * *      *** ** **     ** **   *  * ** **    

consensus_11114#0      GCAACAAACTTCAGGAACCTTATTTGAC-ACAAGT-GAGCCAGAAAATTCCTTAGAAGCA 1609
consensus_11114#1      ACAACAGTTTGGGACATTGTGGCAGGGCTGCAAATAGAGACGGGAGAATACATAGGA--A 1186
                        *****   *     *   *     * *  *** * *** * * * * * * *** *  *

consensus_11114#0      TTGAGCCCACAGGATGATGAAGATGTCGTCCGCACACCTGTCCATGTGTCCCGGACAGTT 1669
consensus_11114#1      TTGGAGAAATGGGGCGA-GAACAAAATTTCCATACAATCATCAA--------GGACGG-- 1235
                       ***     *  **  ** *** *     ***  ***    ** *        **** *  

consensus_11114#0      GAGAGTACGTCGCGGCAGTTTCCAGGATATGGTACTCGGTCATCAGAAATTTTGCAAAGG 1729
consensus_11114#1      -AGATTTCCTAACAATAAT--CAAAGATTTTGAA---AGTTGCCTGCTGCCTCC---AAC 1286
                        *** * * *  *   * *  * * *** * * *    **   * *     *     *  

consensus_11114#0      GCTCCATGCACACTGGATGGACCAAAGGTTCCAAGCACGACAAATGGAATTCCGCCTAGT 1789
consensus_11114#1      GTCTCAGGAGCA--GGGTGATCCAGGACCTAGAGGCA--------GGGAGTGACCCAAGT 1336
                       *   ** *  **  ** **  ***     *  * ***        ** * *   ** ***

consensus_11114#0      TCCGATTTGGGGAGCCACTGGGTACCAGGTTTCCACGCTAATAAGAAAACCAATGTAAAA 1849
consensus_11114#1      CCTGGTTTTTGAACC--TCAAATAGT-GGTTTATACATTG----TAGTTCCTGTTTATCA 1389
                        * * ***  * * *       **   *****  **  *      *   **  * **  *

consensus_11114#0      CATCATTTGATTCTGAATCCATCATCAGCTCCTATTGACAGTGAGCACATTTTGGGAGTT 1909
consensus_11114#1      GAGCCCCAGA-----GGTGTATCAG-AATTGCGTGCGCCCGTAATTCTATTT-----AAT 1438
                        * *    **       *  ****  *  * *    * * ** *    ****       *

consensus_11114#0      GAAGGAAGATTGAACAGCTTGCTTGATGTAAATGGAGGTATTAGCAAACGAAAAGACGCA 1969
consensus_11114#1      AGGAGCAGATGTTACTGTCAGTTTATTAGAGGTAGAAACATATTCTGCAAATAGGTCATT 1498
                           * ****   ** *   * **  *  *  * **   **   *     * * * *   

consensus_11114#0      ACAAATGGATACTTGAAGCTTCTCCTTGTGGCTGCAGCGGAAGGTGACAATGCTGGGGGC 2029
consensus_11114#1      GC---------CTTTGCGGTTCTTTTACTAATTAATTTGCCCATTGGCTCCCTCTGCGCT 1549
                        *         ***   * ****  *  *   *     *     ** *       * *  

consensus_11114#0      ACGTCTAAAAGTGTAAGGGATCTTTCGTTAATTCTTGATGCACTTCTGAAAACAAGATCC 2089
consensus_11114#1      ATGTGTAATCCCGATAGGAATAATTGATT--TGATTCAAATCGTTTTACAGGCAAAAT-- 1605
                       * ** ***    *  *** **  **  **  *  ** *     ** *  *  *** **  

consensus_11114#0      AATTCTGTCCTGTTGGATATCATCAATAAGAATGGACTGCAAATGCTTCACAATATATTA 2149
consensus_11114#1      ------GGCTAATTGG-TTTCAAAAAAAAAAAAGA------------------------- 1633
                             * *   **** * ***  ** ** ** *                          

consensus_11114#0      AAGCAGAATAAAAGCGATTTCCATAGGATACCTATAATAAGAAAGCTTGTGAAGGTTTGC 2209
consensus_11114#1      ------------------------------------------------------------
                                                                                   

consensus_11114#0      ATTTCTTTTTTATGTTATGTCTTATTACATTAGTTTCCAATTAATATATCACATTAGAGC 2269
consensus_11114#1      ------------------------------------------------------------
                                                                                   

consensus_11114#0      AAGTACATCCCTTAACAACTGA 2291
consensus_11114#1      ----------------------
                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)