|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1179 fasta sequence
[CTAGGATGATGCGGAGCGCAATCCAGTTTCTTTCAAGAAAATGGCCATTCTGGAATAGAACTGATGGAGCAGATCATTTCTTTGTTGTTCCCATGATTTTGGGGCATGCTTTCACTATCAGGAAGAGAAAGCTATTGTTTGTGGGATACTTCCATTGCTCCGCCGTGCCACATTGGTTCATTTTTTTGGACAGAAGAACCATGTGTGCTTGAAGGAGGGTTCTATCACTATACCACCATATGCGCCTCCTCAGAAAATGCAAGCTCACTTGATTCCTCCTGATACTCCCCGTTCAATCTTTGTTTACTTCAGAGGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGCAAGAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGACATTTCTACGGAACACCCAGCTACTTACTATGAAGATATGCAGCGCTCAGTCTTCTGCTTGTCCCCCTTGGGATGGGCACCATGGAGCCCTAGATTGGTGGAGGCTGTAGTTNTCGGTTGCATTCCAGTCATCATAGCTGATGATATTGTGCTTCCGTTTGCTGACGCAATCCCATGGGACGAAATCGGTGTTTTTGTTGACG-AGGAGGATGTTCCAAGGCTAGACTCAATCCTCACATCCATCCCAATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTCTTGTGTTCACTAAACTAGCTGGGTGACCCGCGCAATTGCGCGGCTAGCACCCATAGAAAAGTATATATATTTTAA]
[+] EMBL CF331937 [CTAGGATGATGCGGAGCGCAATCCAGTTTCTTTCAAGAAAATGGCCATTCTGGAATAGAACTGATGGAGCAGATCATTTCTTTGTTGTTCCCATGATTTTGGGGCATGCTTTCACTATCAGGAAGAGAAAGCTATTGTTTGTGGGATACTTCCATTGCTCCGCCGTGCCACATTGGTTCATTTTTTTGGACAGAAGAACCATGTGTGCTTGAAGGAGGGTTCTATCACTATACCACCATATGCGCCTCCTCAGAAAATGCAAGCTCACTTGATTCCTCCTGATACTCCCCGTTCAATCTTTGTTTACTTCAGAGGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGCAAGAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGACATTTCTACGGAACACCCAGCTACTTACTATGAAGATATGCAGCGCTCAGTCTTCTGCTTGTCCCCCTTGGGATGGGCACCATGGAGCCCTAGATTGGTGGAGGCTGTAGTTNTCGGTTGCATTCCAGTCATCATAGCTGATGATATTGTGCTTCCGTTTGCTGACGCAATCCCATGGGACGAAATCGGTG ]
[+] EMBL CA999220 [ TCCAGTCATCATAGCTGATGATATTGTGCTTCCGTTTGCTGACGCAATCCCATGGGACGAAATCGGTGTTTTTGTTGACG AGGAGGATGTTCCAAGGCTAGACTCAATCCTCACATCCATCCCAATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTCTTGTGTTCACTAAACTAGCTGGGTGACCCGCGCAATTGCGCGGCTAGCACCCATAGAAAAGTATATATATTTTAA]
[+] EMBL C28418 [ gnACGNAGGAGGATGTTCCAAGGCTAGACTCAATCCTCACATCCATCCCAATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGNTTTAAGTTATGTCCTTTTCCACTGAGGAGGTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTAT ]
[-] EMBL BI305489 [ CCAATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTCTT ]
[-] EMBL BI305969 [ CCAATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAACCCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTCTT ]
[-] EMBL CF331936 [ AAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTCTTGTGTTC CAAAAaaaaaaaaa ]
consensusID : consensus_11116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 497 fasta sequence
[AGGATGTTCCAAGGCTAGANTCAATCCTCACATCCATCCCAATTGATGATANCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAA----TTAA-------AAAAAAAAAAAAAAAA]
[+] EMBL AU092938 [AGGATGTTCCAAGGCTAGANTCAATCCTCACATCCATCCCAATTGATGATANCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAA TTAA AAAAAAAAAAAAAAA ]
[-] EMBL CF278722 [ ATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTAAGGAGTTTCTAGTTTCACATAGATAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTAATGTGTTCAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11116#0 CTAGGATGATGCGGAGCGCAATCCAGTTTCTTTCAAGAAAATGGCCATTCTGGAATAGAA 60
consensus_11116#1 ------------------------------------------------------------
consensus_11116#0 CTGATGGAGCAGATCATTTCTTTGTTGTTCCCATGATTTTGGGGCATGCTTTCACTATCA 120
consensus_11116#1 ------------------------------------------------------------
consensus_11116#0 GGAAGAGAAAGCTATTGTTTGTGGGATACTTCCATTGCTCCGCCGTGCCACATTGGTTCA 180
consensus_11116#1 ------------------------------------------------------------
consensus_11116#0 TTTTTTTGGACAGAAGAACCATGTGTGCTTGAAGGAGGGTTCTATCACTATACCACCATA 240
consensus_11116#1 ------------------------------------------------------------
consensus_11116#0 TGCGCCTCCTCAGAAAATGCAAGCTCACTTGATTCCTCCTGATACTCCCCGTTCAATCTT 300
consensus_11116#1 ------------------------------------------------------------
consensus_11116#0 TGTTTACTTCAGAGGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGC 360
consensus_11116#1 ------------------------------------------------------------
consensus_11116#0 AAGAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGACATTTC 420
consensus_11116#1 ------------------------------------------------------------
consensus_11116#0 TACGGAACACCCAGCTACTTACTATGAAGATATGCAGCGCTCAGTCTTCTGCTTGTCCCC 480
consensus_11116#1 ------------------------------------------------------------
consensus_11116#0 CTTGGGATGGGCACCATGGAGCCCTAGATTGGTGGAGGCTGTAGTTNTCGGTTGCATTCC 540
consensus_11116#1 ------------------------------------------------------------
consensus_11116#0 AGTCATCATAGCTGATGATATTGTGCTTCCGTTTGCTGACGCAATCCCATGGGACGAAAT 600
consensus_11116#1 ------------------------------------------------------------
consensus_11116#0 CGGTGTTTTTGTTGACGAGGAGGATGTTCCAAGGCTAGACTCAATCCTCACATCCATCCC 660
consensus_11116#1 --------------------AGGATGTTCCAAGGCTAGANTCAATCCTCACATCCATCCC 40
******************* ********************
consensus_11116#0 AATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCAT 720
consensus_11116#1 AATTGATGATANCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCAT 100
*********** ************************************************
consensus_11116#0 GTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGC 780
consensus_11116#1 GTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGC 160
************************************************************
consensus_11116#0 TCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTG 840
consensus_11116#1 TCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTG 220
************************************************************
consensus_11116#0 GACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACT 900
consensus_11116#1 GACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACT 280
************************************************************
consensus_11116#0 CGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGT 960
consensus_11116#1 CGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGT 340
************************************************************
consensus_11116#0 TTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATG 1020
consensus_11116#1 TTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATG 400
************************************************************
consensus_11116#0 CCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAA 1080
consensus_11116#1 CCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAA 460
************************************************************
consensus_11116#0 AGCAATGAATGTCAGAATTTGTTCTTGTGTTCACTAAACTAGCTGGGTGACCCGCGCAAT 1140
consensus_11116#1 AGCAATGAATGTCAGAATTAAAAAAAAAAAAAAAAAA----------------------- 497
******************* * **
consensus_11116#0 TGCGCGGCTAGCACCCATAGAAAAGTATATATATTTTAA 1179
consensus_11116#1 ---------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||