These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1653 fasta sequence [CCTTCCCCTTCCCCCCCTCCGCCGCCTCCTCCGCCGCGAAACGAAAGGCGAGCTCTCTCTCTCTCTCTCTCCGCGGCGCGGTCAAAACCCTAGCGCGCGAGGAGGCCCCCCCCATGGCGCAGCAGCTCTCCGCCCCCTTCCGCGCCGCCGCGGCCGCCGGATCCCGCGCCTCCGCCGCCGCCGCCGATCCCGCCAAGGTGTTACGCTTGAGAAGCGCTGGCTCAGCTCAGTTCACCTCCATCGCAGCTTCCTCTTCATTTGCTAGGAACATTGAGCCGCTGAGAGCGATAGCTACTCAGGCACCCCCTGCCGTCCCACAATATTCGAGTGGCGAGAAGACAAAGGTTGGCATCAATGGGTTTGGGCGAATTGGGAGGTTGGTCCTGCGTATTGCAACCAGTAGAGATGATATTGAAGTTGTTGCTGTCAATGATCCTTTCATTGATGCTAAATACATGGCCTACATGTTCAAGTATGACTCCACTCATGGTCCATTTAAAGGCTCCATTAAGGTTGTGGATGATTCAACCCTGGAGATCAATGGAAAGAAAGTCACAATCACTAGCAAAAGAGATCCAGCAGATATTCCTTGGGGTAACTTTGGAGCTGAGTATGTTGTTGAATCTTCAGGTGTTTTTACAACAACTGAAAAGGCATCGGCACATTTGAAGGGCGGTGCTAAGAAAGTTGTGATATCTGCTCCATCAGCAGATGCTCCAATGTTTGTCGTTGGAGTAAATGAGAAGAGCTATGATCCTAAAATGAATGTTGTTTCTAACGCAAGTTGTACTACCAACTGTCTTGCTCCTCTTGCCAAGGTTGTCCATGAGGAATTTGGCATTGTTGAGGGTCTCATGACAACTGTTCATGCCACAACAGCCACCCAGAAGACTGTCGATGGCCCTTCAATGAAAGATTGGAGAGGAGGGCGTGGTGCTGCTCAAAACATAATTCCTAGCTCCACTGGTGCAGCCAAGGCTGTTGGGAAAGTCCTCCCTGAGCTAAATGGAAAGCTCACTGGTATGGCCTTCCGAGTTCCAACACCAAATGTGTCTGTTGTCGACTTGACCTGCCGGATTGAAAAAAGTGCATCCTATGACGATGTGAAAGCAGCCATCAAGGCAGCATCAGAGGGTGCACTGAAAGGTATTCTAGGTTACACAGATGAGGATGTGGTTTCCAATGACTTCGTTGGTGATGCAAGGTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGCTTGTGTCATGGTATGACAACGAGTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCCACATGGCTCTTGTCAACGCCAAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTAGCTAGGAAAGGCTGCAATTTTGACGGTCTCTTTCTGTTGTCTTGGAATAAGATGTAAACTTGGAAACAAAGCAAAAAAAGAATGGACATTGATGTCCATGACATTGTTTGTAGCAGGCGGTGAAATTTACTCTGTATCGACCTGGGCAAGCGGAACTGTTGAGTGAACCATATGTCGGCAA-CCTGATTGATTCATTGAGTCCAATGCTATGCCATTCTATATTTACTTTAAACATGCTTGTTTCATGCCAGAAATGTTCAACAGACAATTGGC] [+] EMBL AK070032 [CCTTCCCCTTCCCCCCCTCCGCCGCCTCCTCCGCCGCGAAACGAAAGGCGAGCTCTCTCTCTCTCTCTCTCCGCGGCGCGGTCAAAACCCTAGCGCGCGAGGAGGCCCCCCCCATGGCGCAGCAGCTCTCCGCCCCCTTCCGCGCCGCCGCGGCCGCCGGATCCCGCGCCTCCGCCGCCGCCGCCGATCCCGCCAAGGTGTTACGCTTGAGAAGCGCTGGCTCAGCTCAGTTCACCTCCATCGCAGCTTCCTCTTCATTTGCTAGGAACATTGAGCCGCTGAGAGCGATAGCTACTCAGGCACCCCCTGCCGTCCCACAATATTCGAGTGGCGAGAAGACAAAGGTTGGCATCAATGGGTTTGGGCGAATTGGGAGGTTGGTCCTGCGTATTGCAACCAGTAGAGATGATATTGAAGTTGTTGCTGTCAATGATCCTTTCATTGATGCTAAATACATGGCCTACATGTTCAAGTATGACTCCACTCATGGTCCATTTAAAGGCTCCATTAAGGTTGTGGATGATTCAACCCTGGAGATCAATGGAAAGAAAGTCACAATCACTAGCAAAAGAGATCCAGCAGATATTCCTTGGGGTAACTTTGGAGCTGAGTATGTTGTTGAATCTTCAGGTGTTTTTACAACAACTGAAAAGGCATCGGCACATTTGAAGGGCGGTGCTAAGAAAGTTGTGATATCTGCTCCATCAGCAGATGCTCCAATGTTTGTCGTTGGAGTAAATGAGAAGAGCTATGATCCTAAAATGAATGTTGTTTCTAACGCAAGTTGTACTACCAACTGTCTTGCTCCTCTTGCCAAGGTTGTCCATGAGGAATTTGGCATTGTTGAGGGTCTCATGACAACTGTTCATGCCACAACAGCCACCCAGAAGACTGTCGATGGCCCTTCAATGAAAGATTGGAGAGGAGGGCGTGGTGCTGCTCAAAACATAATTCCTAGCTCCACTGGTGCAGCCAAGGCTGTTGGGAAAGTCCTCCCTGAGCTAAATGGAAAGCTCACTGGTATGGCCTTCCGAGTTCCAACACCAAATGTGTCTGTTGTCGACTTGACCTGCCGGATTGAAAAAAGTGCATCCTATGACGATGTGAAAGCAGCCATCAAGGCAGCATCAGAGGGTGCACTGAAAGGTATTCTAGGTTACACAGATGAGGATGTGGTTTCCAATGACTTCGTTGGTGATGCAAGGTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGCTTGTGTCATGGTATGACAACGAGTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCCACATGGCTCTTGTCAACGCCAAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTAGCTAGGAAAGGCTGCAATTTTGACGGTCTCTTTCTGTTGTCTTGGAATAAGATGTAAACTTGGAAACAAAGCAAAAAAAGAATGGACATTGATGTCCATGACATTGTTTGTAGCAGGCGGTGAAATTTACTCTGTATCGACCTGGGCAAGCGGAACTGTTGAGTGAACCATATGTCGGCAA CCTGATTGATTCATTGAGTCCAATGCTATGCCATTCTATATTTACTTTAAACATGCTTGTTTCATGCCAGAAATGTTCAACAGACAATTGGC] [+] EMBL CB673878 [ CCCCCCCTCCTCTTCCTCCTCCGCCGCGAAACGAAAGGCGAGCTCTCTCTCTCTCTCTCTCCGCGGCGCGGTCAAAACCCTAGCGCGCGAGGAGGCCCCCCCCATGGCGCAGCAGCTCTCCGCCCCCTTCCGCGCCGCCGCGGCCGCCGGATCCC CGCCTCCGCCGCCGCCGCCGATCCCGCCAAGGTGTTACGCTTGAGAAGCGCTGGCTCAGCTCAGTTCACCTCCATCGCAGCTTCCTCTTCATTTGCTAGGAACATTGAGCCGCTGAGAGCGATAGCTACTCAGGCACCCCCTGCCGTCCCACAATATTCGAGTGGCGAGAAGACAAAGGTTGGCATCAATGGGTTTGGGCGAATTGGGAGGTTGGTCCTGCGTATTGCAACCAGTAGAGATGATATTGAAGTTGTTGCTGTCAATGATCCTTTCATTGATGCTAAATACATGGCCTACATGTTCAAGTATGACTCCACTCATGGTCCATTTAAAGGCTCCATTAAGGTTGTGGATGATTCAACCCTGGAGATCAATGGAAAGAAAGTCACAATCACTAGCAAAAGAGATCCAGCAGATATTCCTTGGGGTAACTTTGGAGCTGAGTATGTTGTTGAATCTTCAGGTGTTTTTACAACAACTGAAAAGGCATCGGCACATTTGAAGGGCGGTGCTAAGAAAGTTGTGATATCTGCTCCATCAGCAGATGCTCCAATGTTTGTCGTTGGAGTAAATGAGAAGAGCTATGATCCT ] [-] EMBL AU093252 [ GCCTCCGCCGCCGCCGCCGATCCCGCCAAGGTGTTACGCTTGAGAAGCGCTGGCTCAGCTCAGTTCACCTCCATCGCAGCTTCCTCTTCATTTGCTAGGAACATTGAGCCGCTGAGAGCGATAG TACTCAGGCACCCCCTGCCGTCCCACAATATTCGAGTGGCGAGAAGACAAAGGTTGGCATCAATGGGTTTGGGCGAATTGGGAGGTTGGTCCTGCGTATTGCAACCAGTAGAGATGATATTGAAGTTGTTGCTGTCAATGATCCTTTCATTGATGCTAAATACATGGCCTACATGTTCAAGTATGACTCCACTCATGGTCCATTTAAAGGCTCCATTAAGGTTGTGGATGATTCAACCCTGGAGATCAATGGAAAGAAAGTCACAATCACTAGCAAAAGAGATCCAGCAGATATTCCTTGGGGTAACTTTGGAGCTGAGTATGTTGTTGAATCTTCAGGTGTTTTTACAACAACTGAAAAGGCATCGGCACATTTGAAGGGCGGTGCTAAGAAAGTTGTGATATCTGCTCCATCAGCAGATGCTCCAATGTTTGTCGTTGGAG ] [-] EMBL CB673879 [ CCATGAGGAATTTGGCATTGTTGAGGGTCTCATGACAACTGTTCATGCCACAACAGCCACCCAGAAGACTGTCGATGGCCCTTCAATGAAAGATTGGAGAGGAGGGCGTGGTGCTGCTCAAAACATAATTCCTAGCTCCACTGGTGCAGCCAAGGCTGTTGGGAAAGTCCTCCCTGAGCTAAATGGAAAGCTCACTGGTATGGCCTTCCGAGTTCCAACACCAAATGTGTCTGTTGTCGACTTGACCTGCCGGATTGAAAAAAGTGCATCCTATGACGATGTGAAAGCAGCCATCAAGGCAGCATCAGAGGGTGCACTGAAAGGTATTCTAGGTTACACAGATGAGGATGTGGTTTCCAATGACTTCGTTGGTGATGCAAGGTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGCTTGTGTCATGGTATGACAACGAGTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCCACATGGCTCTTGTCAACGCCAAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTAGCTAGGAAAGGCTGCAATTTTGACGGTCTCTTTCTGTTGTCTTGGAATAAGATGTAAACTTGGAAACAAAGCAAAAAAAGAATGGACATTGATGTCCATGACATTGTTTGTAGCAGGCGGTGAAATTTACTCTGTATCGACCTGGGCAAGCGGAACTGTTGAGTGAACCATATGTCGGCAACCCTGATTGAT ] [+] EMBL AK059005 [ GAAAGATTGGAGAGGAGGGCGTGGTGCTGCTCAAAACATAATTCCTAGCTCCACTGGTGCAGCCAAGGCTGTTGGGAAAGTCCTCCCTGAGCTAAATGGAAAGCTCACTGGTATGGCCTTCCGAGTTCCAACACCAAATGTGTCTGTTGTCGACTTGACCTGCCGGATTGAAAAAAGTGCATCCTATGACGATGTGAAAGCAGCCATCAAGGCAGCATCAGAGGGTGCACTGAAAGGTATTCTAGGTTACACAGATGAGGATGTGGTTTCCAATGACTTCGTTGGTGATGCAAGGTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGCTTGTGTCATGGTATGACAACGAGTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCCACATGGCTCTTGTCAACGCCAAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTAGCTAGGAAAGGCTGCAATTTTGACGGTCTCTTTCTGTTGTCTTGGAATAAGATGTAAACTTGGAAACAAAGCAAAAAAAGAATGGACATTGATGTCCATGACATTGTTTGTAGCAGGCGGTGAAATTTACTCTGTATCGACCTGGGCAAGCGGAACTGTTGAGTGAACCATATGTCGGCAA CCTGATTGATT ] [-] EMBL C27246 [ GTA TCCAGG TACACAGATGAGGATGTGGTTTCCAATGAC TCGTTGGTGATGCAAGGTCAAACATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGCTTGTGTCATGGTATGACAACGAGTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCCACATGGCTCTTGTCAACGCCAAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTAGCTAGGAAAGGCTGCAATTTTGACGGTCTCTTTCCGTTGTCTTGGAATAAGATGTAAACTTGGAAACAAAGCAAAAAAAGAATGGACATTGATGTCCATGACATTGTTTGTAGCAGGCGGTGAAATTTACTCTGTATCGACCTGGGCAAGCGGAACTGTTGAGTGAACCATATGTCGGCAA CCTGATTGATTCATTGAGTCCAATGCTATGC ] [+] EMBL CF331693 [ AGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTAGCTAGGAAAGGCTGCAATTTTGACGGTCTCTTTCTGTTGTCTTGGAATAAGATGTAAACTTGGAAACAAAGCAAAAAAAGAATGGACATTGATGTCCATGACATTGTTTGTAGCAGGCGGTGAAATTTACTCTGTATCGACCTGGGCAAGCGGAACTGTTGAGTGAA ] consensusID : consensus_11118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [CCGAATTCNGCCGANGACAACGANTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCCACATGGCTCTTGTCAACGCCNAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTANCTAGGAAAGGCTGCAATTTTGACNGTCTCTTTCTGTTGTCTTGGAATAAGATATTAACTTGGAAACCAAGCCAAAAAAGAATGGACATTGATGTNCATGACATTGTTTGTTGCACGCGGTGAAATTTACTCTGTATCNACCTGGGCAAGCG] [+] EMBL AA752990 [CCGAATTCNGCCGANGACAACGANTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCCACATGGCTCTTGTCAACGCCNAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTANCTAGGAAAGGCTGCAATTTTGACNGTCTCTTTCTGTTGTCTTGGAATAAGATATTAACTTGGAAACCAAGCCAAAAAAGAATGGACATTGATGTNCATGACATTGTTTGTTGCACGCGGTGAAATTTACTCTGTATCNACCTGGGCAAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11118#0 CCTTCCCCTTCCCCCCCTCCGCCGCCTCCTCCGCCGCGAAACGAAAGGCGAGCTCTCTCT 60 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 CTCTCTCTCTCCGCGGCGCGGTCAAAACCCTAGCGCGCGAGGAGGCCCCCCCCATGGCGC 120 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 AGCAGCTCTCCGCCCCCTTCCGCGCCGCCGCGGCCGCCGGATCCCGCGCCTCCGCCGCCG 180 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 CCGCCGATCCCGCCAAGGTGTTACGCTTGAGAAGCGCTGGCTCAGCTCAGTTCACCTCCA 240 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 TCGCAGCTTCCTCTTCATTTGCTAGGAACATTGAGCCGCTGAGAGCGATAGCTACTCAGG 300 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 CACCCCCTGCCGTCCCACAATATTCGAGTGGCGAGAAGACAAAGGTTGGCATCAATGGGT 360 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 TTGGGCGAATTGGGAGGTTGGTCCTGCGTATTGCAACCAGTAGAGATGATATTGAAGTTG 420 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 TTGCTGTCAATGATCCTTTCATTGATGCTAAATACATGGCCTACATGTTCAAGTATGACT 480 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 CCACTCATGGTCCATTTAAAGGCTCCATTAAGGTTGTGGATGATTCAACCCTGGAGATCA 540 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 ATGGAAAGAAAGTCACAATCACTAGCAAAAGAGATCCAGCAGATATTCCTTGGGGTAACT 600 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 TTGGAGCTGAGTATGTTGTTGAATCTTCAGGTGTTTTTACAACAACTGAAAAGGCATCGG 660 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 CACATTTGAAGGGCGGTGCTAAGAAAGTTGTGATATCTGCTCCATCAGCAGATGCTCCAA 720 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 TGTTTGTCGTTGGAGTAAATGAGAAGAGCTATGATCCTAAAATGAATGTTGTTTCTAACG 780 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 CAAGTTGTACTACCAACTGTCTTGCTCCTCTTGCCAAGGTTGTCCATGAGGAATTTGGCA 840 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 TTGTTGAGGGTCTCATGACAACTGTTCATGCCACAACAGCCACCCAGAAGACTGTCGATG 900 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 GCCCTTCAATGAAAGATTGGAGAGGAGGGCGTGGTGCTGCTCAAAACATAATTCCTAGCT 960 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 CCACTGGTGCAGCCAAGGCTGTTGGGAAAGTCCTCCCTGAGCTAAATGGAAAGCTCACTG 1020 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 GTATGGCCTTCCGAGTTCCAACACCAAATGTGTCTGTTGTCGACTTGACCTGCCGGATTG 1080 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 AAAAAAGTGCATCCTATGACGATGTGAAAGCAGCCATCAAGGCAGCATCAGAGGGTGCAC 1140 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 TGAAAGGTATTCTAGGTTACACAGATGAGGATGTGGTTTCCAATGACTTCGTTGGTGATG 1200 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 CAAGGTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGC 1260 consensus_11118#1 -----------------------------------------------------------C 1 * consensus_11118#0 TTGTGTCATGGTATGACAACGAGTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCC 1320 consensus_11118#1 CGAATTCNGCCGANGACAACGANTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCC 61 ** * ******** ************************************* consensus_11118#0 ACATGGCTCTTGTCAACGCCAAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTA 1380 consensus_11118#1 ACATGGCTCTTGTCAACGCCNAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTA 121 ******************** *************************************** consensus_11118#0 GCTAGGAAAGGCTGCAATTTTGACGGTCTCTTTCTGTTGTCTTGGAATAAGATGTAAACT 1440 consensus_11118#1 NCTAGGAAAGGCTGCAATTTTGACNGTCTCTTTCTGTTGTCTTGGAATAAGATATTAACT 181 *********************** **************************** * **** consensus_11118#0 TGGAAACAAAGCAAAAAAAGAATGGACATTGATGTCCATGACATTGTTTGTAGCAGGCGG 1500 consensus_11118#1 TGGAAACCAAGCCAAAAAAGAATGGACATTGATGTNCATGACATTGTTTGTTGCACGCGG 241 ******* **** ********************** *************** *** **** consensus_11118#0 TGAAATTTACTCTGTATCGACCTGGGCAAGCGGAACTGTTGAGTGAACCATATGTCGGCA 1560 consensus_11118#1 TGAAATTTACTCTGTATCNACCTGGGCAAGCG---------------------------- 273 ****************** ************* consensus_11118#0 ACCTGATTGATTCATTGAGTCCAATGCTATGCCATTCTATATTTACTTTAAACATGCTTG 1620 consensus_11118#1 ------------------------------------------------------------ consensus_11118#0 TTTCATGCCAGAAATGTTCAACAGACAATTGGC 1653 consensus_11118#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||