cluster # 11121

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Oryza sativa
cluster # 11121 cluster # 11121 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11121#0 length = 2070 sequences # 6

consensus_11121#1 length = 551 sequences # 1
consensus_11121#2 length = 468 sequences # 1

consensusID : consensus_11121#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2070
fasta sequence

                              [AGTTACGCAACGAATCAATCACCCCCGCGGTGATTACCACTGCAAACACCACCACCGCCGCCGTGGGAACCGGCATTAGAAGCGAGGAGACGACTAATCAAGCCACCAAAAAAAAATTTAAGACCCCTCCCTCCTCCTTGCCGCACTCACCACCAACCTGTAATGTGAACCTGCTGCTCTGCGAGTTATCGGTGTTCATCCAGCAGCGAGAGCGGTGGCAGTGGTACTAGGAGTCTAGGACGAGTGGTGGGTACTGGTTGTACTGGTGGTACGGCGGTTTCAGCGGCGGAGTTCTCGCGGGATTGTCTCGTTCGTCTGATCCGGCGCTGGAGGACGGCGGTTGGTTTCTTTTTCT-TCT-GCTGCTTCGCGAGCGGGTGTGAGAGATCGGTTCCATGCGGGGGTCGCTGCTGCTGGCCTCGGGCCGTCAGGGTTTGCAAGCGGAATCTACTCAACTATGACGGAT-TAGCCTCAAAATAAATGATGGCAGCTGAGGTTAATCAAACTTTTTTCGCGTGGTCACAAGGAGAACCAACTGAACGGGACGGTTCTCAAGGTGTATCTGTGTCCCAGAAAATTGATCATGGTTCCATCTCCTTTGGAAGATTCGAATTGGAGTCTCTATCATGGGAAAAGTGGTCAGTATTTTCTGATGACAAGCGTCATGAAGAATTTGGCAAATTCAATGGTTTAGTTGCACAGAAGAAGGCATATTTTGAAGAGTATTACAGGAAAATTAGAGAACTGAAGGCACAGCAGCAAAACCAGCAAACTGAACTTATTTTGGAATACAGTGGTGATGGCAGTGATTCGAGTCAGACAGGAGAATATACACAAGGTGCAGAGCTTGAAACTCCTACTGGATCTGGAACTATCGTTGATGATTATGTGGAGCAAGGTGCACATGAAACTACCTCTGAGCAAGGATTGACATGTTATGATGACCATGAAAACGAGAACTTCAATGCAGAATTCTCCTCATCCAATATTTCTTCTTCAGCTGTAGGTTTACAGCAAACTGGCCGGGATGCTAGAGAAAATGTACACGGTGATGATTCGGCTGGTAAAATGGATTTAGAGCAGCAGAATGCCATTTCTGGTCATAGTCTTGGAACAGCATATGAAGTTGTAAGGGCTCCTAAAAGAATTATCGAGAAAGACTCCAGGCTTAGATATGCTCCAAAGATAGTACCAAAGTCTGTCAAAACCTCCTCCGATAGTCCTCTGGATCGCACATCTGTTAGTAAGAGGCCTGATTCTCTGAAGCTTGGCATGAGTATTAACCAGAAGGCTAAGACTGACAATGATCGTTTATTGAGAGGACCAAATGTAGCGCCTCATAAGATGTCTGGATCAACCGAAAGGAACAAGCTTACAACAAAACAAACAGGTGTCAGAAGACCTTCCTCTGCATCCTCACAACGGCCCTCTGTGGGAGAGCGGCACCGGATAGCCAGGGAGAGCATAAAAAAGCCTGCTGATGTTTCCACCCCACGGCGTCCTTCCACTGCAGAAAGGCACCCTGTCACCACAGAGCGTGCAAGGAAGCAAGCCGATGTAGATACACCACGCCGACCATCTACTTCTGAAAGACGTGCTGTCAACAAAGGGAGTGCTGACATGACCACTACACATCGCCCCTCTACTGGAGAAAGACGATCTGTTACCAGGGAGAGTGTTCTGAAGATGGACGTAAGAACACCTAGCAAGACAAGGCCTACTATGACGCAACTGAAGGGTGCAACAACCACAGTGGGTATTGTTAAAAAGGCAGGCACTCCAAATGCTTCTAAAAGCATCAACATGGGAACAAAAAGCAATATCAGAGAACTGGAAGGACCTTCGAAAGTGGGCAGACACTCTGTTGGGTCAAAAATTACGGACCTGCAAATTGCTGGCAAACAGAAATCAAGCTCTGTCCACCTTCCTCCACGGAAACTATTGAGTTCCAGTATTGGAGAACCAGCACTGCAAACCTTTACAAGGCCAAAAAAGAAAGATGTTGCAGCGCAATCTCGAGCATCTACATCGAAGAGAGCAATGACTTTGCACACTGGAAACGTAAAGGGGAGG]

[+] EMBL AK102068             [AGTTACGCAACGAATCAATCACCCCCGCGGTGATTACCACTGCAAACACCACCACCGCCGCCGTGGGAACCGGCATTAGAAGCGAGGAGACGACTAATCAAGCCACCAAAAAAAAATTTAAGACCCCTCCCTCCTCCTTGCCGCACTCACCACCAACCTGTAATGTGAACCTGCTGCTCTGCGAGTTATCGGTGTTCATCCAGCAGCGAGAGCGGTGGCAGTGGTACTAGGAGTCTAGGACGAGTGGTGGGTACTGGTTGTACTGGTGGTACGGCGGTTTCAGCGGCGGAGTTCTCGCGGGATTGTCTCGTTCGTCTGATCCGGCGCTGGAGGACGGCGGTTGGTTTCTTTTTCT TCT GCTGCTTCGCGAGCGGGTGTGAGAGATCGGTTCCATGCGGGGGTCGCTGCTGCTGGCCTCGGGCCGTCAGGGTTTGCAAGCGGAATCTACTCAACTATGACGGAT TAGCCTCAAAATAAATGATGGCAGCTGAGGTTAATCAAACTTTTTTCGCGTGGTCACAAGGAGAACCAACTGAACGGGACGGTTCTCAAGGTGTATCTGTGTCCCAGAAAATTGATCATGGTTCCATCTCCTTTGGAAGATTCGAATTGGAGTCTCTATCATGGGAAAAGTGGTCAGTATTTTCTGATGACAAGCGTCATGAAGAATTTGGCAAATTCAATGGTTTAGTTGCACAGAAGAAGGCATATTTTGAAGAGTATTACAGGAAAATTAGAGAACTGAAGGCACAGCAGCAAAACCAGCAAACTGAACTTATTTTGGAATACAGTGGTGATGGCAGTGATTCGAGTCAGACAGGAGAATATACACAAGGTGCAGAGCTTGAAACTCCTACTGGATCTGGAACTATCGTTGATGATTATGTGGAGCAAGGTGCACATGAAACTACCTCTGAGCAAGGATTGACATGTTATGATGACCATGAAAACGAGAACTTCAATGCAGAATTCTCCTCATCCAATATTTCTTCTTCAGCTGTAGGTTTACAGCAAACTGGCCGGGATGCTAGAGAAAATGTACACGGTGATGATTCGGCTGGTAAAATGGATTTAGAGCAGCAGAATGCCATTTCTGGTCATAGTCTTGGAACAGCATATGAAGTTGTAAGGGCTCCTAAAAGAATTATCGAGAAAGACTCCAGGCTTAGATATGCTCCAAAGATAGTACCAAAGTCTGTCAAAACCTCCTCCGATAGTCCTCTGGATCGCACATCTGTTAGTAAGAGGCCTGATTCTCTGAAGCTTGGCATGAGTATTAACCAGAAGGCTAAGACTGACAATGATCGTTTATTGAGAGGACCAAATGTAGCGCCTCATAAGATGTCTGGATCAACCGAAAGGAACAAGCTTACAACAAAACAAACAGGTGTCAGAAGACCTTCCTCTGCATCCTCACAACGGCCCTCTGTGGGAGAGCGGCACCGGATAGCCAGGGAGAGCATAAAAAAGCCTGCTGATGTTTCCACCCCACGGCGTCCTTCCACTGCAGAAAGGCACCCTGTCACCACAGAGCGTGCAAGGAAGCAAGCCGATGTAGATACACCACGCCGACCATCTACTTCTGAAAGACGTGCTGTCAACAAAGGGAGTGCTGACATGACCACTACACATCGCCCCTCTACTGGAGAAAGACGATCTGTTACCAGGGAGAGTGTTCTGAAGATGGACGTAAGAACACCTAGCAAGACAAGGCCTACTATGACGCAACTGAAGGGTGCAACAACCACAGTGGGTATTGTTAAAAAGGCAGGCACTCCAAATGCTTCTAAAAGCATCAACATGGGAACAAAAAGCAATATCAGAGAACTGGAAGGACCTTCGAAAGTGGGCAGACACTCTGTTGGGTCAAAAATTACGGACCTGCAAATTGCTGGCAAACAGAAATCAAGCTCTGTCCACCTTCCTCCACGGAAACTATTGAGTTCCAGTATTGGAGAACCAGCACTGCAAACCTTTACAAGGCCAAAAAAGAAAGATGTTGCAGCGCAATCTCGAGCATCTACATCGAAGAGAGCAATGACTTTGCACACTGGAAACGTAAAGGGGAGG]
[+] EMBL CB677588             [                                                                                     GGAGACGACTAATCAAGCCACCAAAAAAAAATTTAAGACCCCTCCCTCCTCCTTGCCGCACTCACCACCAACCTGTAATGTGAACCTGCTGCTCTGCGAGTTATCGGTGTTCATCCAGCAGCGAGAGCGGTGGCAGTGGTACTAGGAGTCTAGGACGAGTGGTGGGTACTGGTTGTACTGGTGGTACGGCGGTTTCAGCGGCGGAGTTCTCGCGGGATTGTCTCGTTCGTCTGATCCGGCGCTGGAGGACGGCGGTTGGTTTCTTTTTCT TCT GCTGCTTCGCGAGCGGGTGTGAGAGATCGGTTCCATGCGGGGGTCGCTGCTGCTGGCCTCGGGCCGTCAGGGTTTGCAAGCGGAATCTACTCAACTATGACGGAT TAGCCTCAAAATAAATGATGGCAGCTGAGGTTAATCAAACTTTTTTCGCGTGGTCACAAGGAGAACCAACTGAACGGGACGGTTCTCAAGGTGTATCTGTGTCCCAGAAAATTGATCATGGTTCCATCTCCTTTGGAAGATTCGAATTGGAGTCTCTATCATGGGAAAAGTGGTCAGTATTTTCTGATGACAAGCGTCATGAAGAATTTGGCAAATTCAATGGTTTAGTTGCACAGAAGAAGGCATATTTTGAAGAGTATTACAGGAAAATTAGAGAACTGAAGGCACAGCAGCAAAACCAGCAAACTGAACTTATTTTGGAATACAGTGGTGATGGCAGTGATTCGAGTCAGACAGGAGAATATACACAAGGTGCAGAGCTTGAAACTCCTACTGGATCTGGAACTATCGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU108643             [                                                                                                                                                                              TGCTCTGCGAGTTATCGGTGTTCATCCAGCAGCGAGAGCGNTGGCAGTGGTACTAGGAGTCTAGGACGAGTGGTGGGTACTGGTTGTACTGGTGGTACGGCGGTTTCAGCGGCGGAGTTCTCGCGGGATTGTCTCGTTCGTCTGATCCGGCGCTGGAGGACGGCGGTTGGTTTCTTTTTCTNACTAACTNCTTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK067070             [                                                                                                                                                                                                                                                                           GGTACGGCGGTTTCAGCGGCGGAGTTCTCGCGGGATTGTCTCGTTCGTCTGATCCGGCGCTGGAGGACGGCGGTTGGTTTCTTTTTCT TCT GCTGCTTCGCGAGCGGGTGTGAGAGATCGGTTCCATGCGGGGGTCGCTGCTGCTGGCCTCGGGCCGTCAGGGTTTGCAAGCGGAATCTACTCAACTATGACGGAT TAGCCTCAAAATAAATGATGGCAGCTGAGGTTAATCAAACTTTTTTCGCGTGGTCACAAGGAGAACCAACTGAACGGGACGGTTCTCAAGGTGTATCTGTGTCCCAGAAAATTGATCATGGTTCCATCTCCTTTGGAAGATTCGAATTGGAGTCTCTATCATGGGAAAAGTGGTCAGTATTTTCTGATGACAAGCGTCATGAAGAATTTGGCAAATTCAATGGTTTAGTTGCACAGAAGAAGGCATATTTTGAAGAGTATTACAGGAAAATTAGAGAACTGAAGGCACAGCAGCAAAACCAGCAAACTGAACTTATTTTGGAATACAGTGGTGATGGCAGTGATTCGAGTCAGACAGGAGAATATACACAAGGTGCAGAGCTTGAAACTCCTACTGGATCTGGAACTATCGTTGATGATTATGTGGAGCAAGGTGCACATGAAACTACCTCTGAGCAAGGATTGACATGTTATGATGACCATGAAAACGAGAACTTCAATGCAGAATTCTCCTCATCCAATATTTCTTCTTCAGCTGTAGGTTTACAGCAAACTGGCCGGGATGCTAGAGAAAATGTACACGGTGATGATTCGGCTGGTAAAATGGATTTAGAGCAGCAGAATGCCATTTCTGGTCATAGTCTTGGAACAGCATATGAAGTTGTAAGGGCTCCTAAAAGAATTATCGAGAAAGACTCCAGGCTTAGATATGCTCCAAAGATAGTACCAAAGTCTGTCAAAACCTCCTCCGATAGTCCTCTGGATCGCACATCTGTTAGTAAGAGGCCTGATTCTCTGAAGCTTGGCATGAGTATTAACCAGAAGGCTAAGACTGACAATGATCGTTTATTGAGAGGACCAAATGTAGCGCCTCATAAGATGTCTGGATCAACCGAAAGGAACAAGCTTACAACAAAACAAACAGGTGTCAGAAGACCTTCCTCTGCATCCTCACAACGGCCCTCTGTGGGAGAGCGGCACCGGATAGCCAGGGAGAGCATAAAAAAGCCTGCTGATGTTTCCACCCCACGGCGTCCTTCCACTGCAGAAAGGCACCCTGTCACCACAGAGCGTGCAAGGAAGCAAGCCGATGTAGATACACCACGCCGACCATCTACTTCTGAAAGACGTGCTGTCAACAAAGGGAGTGCTGACATGACCACTACACATCGCCCCTCTACTGGAGAAAGACGATCTGTTACCAGGGAGAGTGTTCTGAAGATGGACGTAAGAACACCTAGCAAGACAAGGCCTACTATGACGCAACTGAAGGGTGCAACAACCACAGTGGGTATTGTTAAAAAGGCAGGCACTCCAAATGCTTCTAAAAGCATCAACATGGGAACAAAAAGCAATATCAGAGAACTGGAAGGACCTTCGAAAGTGGGCAGACACTCTGTTGGGTCAAAAATTACGGACCTGCAAATTGCTGGCAAACAGAAATCAAGCTCTGTCCACCTTCCTCCACGGAAACTATTGAGTTCCAGTATTGGAGAACCAGCACTGCAAACCTTTACAAGGCCAAAAAAGAAAGATGTTGCAGCGCAATCTCGAGCATCTACATCGAAGAGAGCAATGACTTTGCACACTGGAAACGTAAAGGGGAGG]
[+] EMBL CF303377             [                                                                                                                                                                                                                                                                                                                                                                                                                                                        CGGAATCTACTCAACTATGACGGATNTAGCCTCAAAATAAATGATGGCAGCTGAGGTTAATCAAACTTTTTTCGCGTGGTCACAAGGAGAACCAACTGAACGGGACGGTTCTCAAGGTGTATCTGTGTCCCAGAAAATTGATCATGGTTCCATCTCCTTTGGAAGATTCGAATTGGAGTCTCTATCATGGGAAAAGTGGTCAGTATTTTCTGATGACAAGCGTCATGAAGAATTTGGCAAATTCAATGGTTTAGTTGCACAGAAGAAGGCATATTTTGAAGAGTATTACAGGAAAATTAGAGAACTGAAGGCACAGCAGCAAAACCAGCAAACTGAACTTATTTTGGAATACAGTGGTGATGGCAGTGATTCGAGTCAGACAGGAGAATATACACAAGGTGCAGAGCTTGAAACTCCTACTGGATCTGGAACTATCGTTGATGATTATGTGGAGCAAGGTGCACATGAAACTACCTCTGAGCAAGGATTGACATGTTATGATGACCATGAAAACGAGAACTTCAATGCAGAATTCTCCTCATCCAATATTTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK062009             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CAAAGATAGTACCAAAGTCTGTCAAAACCTCCTCCGATAGTCCTCTGGATCGCACATCTGTTAGTAAGAGGCCTGATTCTCTGAAGCTTGGCATGAGTATTAACCAGAAGGCTAAGACTGACAATGATCGTTTATTGAGAGGACCAAATGTAGCGCCTCATAAGATGTCTGGATCAACCGAAAGGAACAAGCTTACAACAAAACAAACAGGTGTCAGAAGACCTTCCTCTGCATCCTCACAACGGCCCTCTGTGGGAGAGCGGCACCGGATAGCCAGGGAGAGCATAAAAAAGCCTGCTGATGTTTCCACCCCACGGCGTCCTTCCACTGCAGAAAGGCACCCTGTCACCACAGAGCGTGCAAGGAAGCAAGCCGATGTAGATACACCACGCCGACCATCTACTTCTGAAAGACGTGCTGTCAACAAAGGGAGTGCTGACATGACCACTACACATCGCCCCTCTACTGGAGAAAGGCGATCTGTTACCAGGGAGAGTGTTCTGAAGATGGACGTAAGAACACCTAGCAAGACAAGGCCTACTATGACGCAACTGAAGGGTGCAACAACCACAGTGGGTATTGTTAAAAAGGCAGGCACTCCAAATGCTTCTAAAAGCATCAACATGGGAACAAAAAGCAATATCAGAGAACTGGAAGGACCTTCGAAAGTGGGCAGACACTCTGTTGGGTCAAAAATTACGGACCTGCAAATTGCTGGCAAACAGAAATCAAGCTCTGTCCACCTTCCTCCACGGAAACTATTGAGTTCCAGTATTGGAGAACCAGCACTGCAAACCTTTACAAGGCCAAAAAAGAAAGATGTTGCAGCGCAATCTCGAGCATCTACATCGAGGAGAGCAATGACTTTGCACACTGGAAACGTAAAGGGGAGG]




>consensus_11121#0
AGTTACGCAACGAATCAATCACCCCCGCGGTGATTACCACTGCAAACACCACCACCGCCG
CCGTGGGAACCGGCATTAGAAGCGAGGAGACGACTAATCAAGCCACCAAAAAAAAATTTA
AGACCCCTCCCTCCTCCTTGCCGCACTCACCACCAACCTGTAATGTGAACCTGCTGCTCT
GCGAGTTATCGGTGTTCATCCAGCAGCGAGAGCGGTGGCAGTGGTACTAGGAGTCTAGGA
CGAGTGGTGGGTACTGGTTGTACTGGTGGTACGGCGGTTTCAGCGGCGGAGTTCTCGCGG
GATTGTCTCGTTCGTCTGATCCGGCGCTGGAGGACGGCGGTTGGTTTCTTTTTCTTCTGC
TGCTTCGCGAGCGGGTGTGAGAGATCGGTTCCATGCGGGGGTCGCTGCTGCTGGCCTCGG
GCCGTCAGGGTTTGCAAGCGGAATCTACTCAACTATGACGGATTAGCCTCAAAATAAATG
ATGGCAGCTGAGGTTAATCAAACTTTTTTCGCGTGGTCACAAGGAGAACCAACTGAACGG
GACGGTTCTCAAGGTGTATCTGTGTCCCAGAAAATTGATCATGGTTCCATCTCCTTTGGA
AGATTCGAATTGGAGTCTCTATCATGGGAAAAGTGGTCAGTATTTTCTGATGACAAGCGT
CATGAAGAATTTGGCAAATTCAATGGTTTAGTTGCACAGAAGAAGGCATATTTTGAAGAG
TATTACAGGAAAATTAGAGAACTGAAGGCACAGCAGCAAAACCAGCAAACTGAACTTATT
TTGGAATACAGTGGTGATGGCAGTGATTCGAGTCAGACAGGAGAATATACACAAGGTGCA
GAGCTTGAAACTCCTACTGGATCTGGAACTATCGTTGATGATTATGTGGAGCAAGGTGCA
CATGAAACTACCTCTGAGCAAGGATTGACATGTTATGATGACCATGAAAACGAGAACTTC
AATGCAGAATTCTCCTCATCCAATATTTCTTCTTCAGCTGTAGGTTTACAGCAAACTGGC
CGGGATGCTAGAGAAAATGTACACGGTGATGATTCGGCTGGTAAAATGGATTTAGAGCAG
CAGAATGCCATTTCTGGTCATAGTCTTGGAACAGCATATGAAGTTGTAAGGGCTCCTAAA
AGAATTATCGAGAAAGACTCCAGGCTTAGATATGCTCCAAAGATAGTACCAAAGTCTGTC
AAAACCTCCTCCGATAGTCCTCTGGATCGCACATCTGTTAGTAAGAGGCCTGATTCTCTG
AAGCTTGGCATGAGTATTAACCAGAAGGCTAAGACTGACAATGATCGTTTATTGAGAGGA
CCAAATGTAGCGCCTCATAAGATGTCTGGATCAACCGAAAGGAACAAGCTTACAACAAAA
CAAACAGGTGTCAGAAGACCTTCCTCTGCATCCTCACAACGGCCCTCTGTGGGAGAGCGG
CACCGGATAGCCAGGGAGAGCATAAAAAAGCCTGCTGATGTTTCCACCCCACGGCGTCCT
TCCACTGCAGAAAGGCACCCTGTCACCACAGAGCGTGCAAGGAAGCAAGCCGATGTAGAT
ACACCACGCCGACCATCTACTTCTGAAAGACGTGCTGTCAACAAAGGGAGTGCTGACATG
ACCACTACACATCGCCCCTCTACTGGAGAAAGACGATCTGTTACCAGGGAGAGTGTTCTG
AAGATGGACGTAAGAACACCTAGCAAGACAAGGCCTACTATGACGCAACTGAAGGGTGCA
ACAACCACAGTGGGTATTGTTAAAAAGGCAGGCACTCCAAATGCTTCTAAAAGCATCAAC
ATGGGAACAAAAAGCAATATCAGAGAACTGGAAGGACCTTCGAAAGTGGGCAGACACTCT
GTTGGGTCAAAAATTACGGACCTGCAAATTGCTGGCAAACAGAAATCAAGCTCTGTCCAC
CTTCCTCCACGGAAACTATTGAGTTCCAGTATTGGAGAACCAGCACTGCAAACCTTTACA
AGGCCAAAAAAGAAAGATGTTGCAGCGCAATCTCGAGCATCTACATCGAAGAGAGCAATG
ACTTTGCACACTGGAAACGTAAAGGGGAGG

consensusID : consensus_11121#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [AATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAATTATCGAGAAAGACTCCAGGCTTAGATATGCTCCAAAGATAGTACCAAAGTCTGTCAAAACCTCCTCCGATAGTCCTCTGGATCGCACATCTGTTAGTAAGAGGCCTGATTCTCTGAAGCTTGGCATGAGTATTAACCAGAAGGCTAAGACTGACAATGATCGTTTATTGAGAGGACCAAATGTAGCGCCTCATAAGATGTCTGGATCAACCGAAAGGAACAAGCTTACAACAAAACAAACAGGTGTCAGAAGACCTTCCTCTGCATCCTCACAACGGCCCTCTGTGGGAGAGCGGCACCGGATAGCCAGGGAGAGCATAAAAAAGCCTGCTGATGTTTCCACCCCACGGCGTCCTTCCACTGCAGAAAGGCACCCTGTCACCACAGAGCGTGCAAGGAAGCAAGCCGATGTAGATACACCACGCCGACCATCTACTTCTGANAGACGTGCTGTCAACAAAGGGGAGTGCTGACATGACCACTACACATCGCCCCTCTACTGGAGAAAGACGA]

[+] EMBL CF276465             [AATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAATTATCGAGAAAGACTCCAGGCTTAGATATGCTCCAAAGATAGTACCAAAGTCTGTCAAAACCTCCTCCGATAGTCCTCTGGATCGCACATCTGTTAGTAAGAGGCCTGATTCTCTGAAGCTTGGCATGAGTATTAACCAGAAGGCTAAGACTGACAATGATCGTTTATTGAGAGGACCAAATGTAGCGCCTCATAAGATGTCTGGATCAACCGAAAGGAACAAGCTTACAACAAAACAAACAGGTGTCAGAAGACCTTCCTCTGCATCCTCACAACGGCCCTCTGTGGGAGAGCGGCACCGGATAGCCAGGGAGAGCATAAAAAAGCCTGCTGATGTTTCCACCCCACGGCGTCCTTCCACTGCAGAAAGGCACCCTGTCACCACAGAGCGTGCAAGGAAGCAAGCCGATGTAGATACACCACGCCGACCATCTACTTCTGANAGACGTGCTGTCAACAAAGGGGAGTGCTGACATGACCACTACACATCGCCCCTCTACTGGAGAAAGACGA]




>consensus_11121#1
AATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAATTATCGAGAAAGACTCCAGGCT
TAGATATGCTCCAAAGATAGTACCAAAGTCTGTCAAAACCTCCTCCGATAGTCCTCTGGA
TCGCACATCTGTTAGTAAGAGGCCTGATTCTCTGAAGCTTGGCATGAGTATTAACCAGAA
GGCTAAGACTGACAATGATCGTTTATTGAGAGGACCAAATGTAGCGCCTCATAAGATGTC
TGGATCAACCGAAAGGAACAAGCTTACAACAAAACAAACAGGTGTCAGAAGACCTTCCTC
TGCATCCTCACAACGGCCCTCTGTGGGAGAGCGGCACCGGATAGCCAGGGAGAGCATAAA
AAAGCCTGCTGATGTTTCCACCCCACGGCGTCCTTCCACTGCAGAAAGGCACCCTGTCAC
CACAGAGCGTGCAAGGAAGCAAGCCGATGTAGATACACCACGCCGACCATCTACTTCTGA
NAGACGTGCTGTCAACAAAGGGGAGTGCTGACATGACCACTACACATCGCCCCTCTACTG
GAGAAAGACGA

consensusID : consensus_11121#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence

                              [GNGTCANACAGGAGAATATACACAAGGTGCAGAGCTTGAAACTCCTACTGGATCTGGAACTATCGTTGATGATTATGTGGAGCAAGCTGTAGGTTTACAGCAAACTGGCCGGGATGCTAGAGAAAATGTACACGGTGATGATTCGGCTGGTAAAATGGATTTAGAGCAGCAGAATGCCATTTCTGGTCATAGTCTTGGAACAGCATATGAAGTTGTAAGGGCTCCTNAAAGAATTATCGAGAAAGACTCCAGGCTTAGATATGCTCCAAAGATAGTACCAAAGTCTGTCAAAACCTTCTNCGATAGTCCTCTGGATCGNACATCTGTTAGTAAGAGGCCTGATNCTCTGAAGCTTGGCATGAGTATTAACCAGAAGGCTAAGCTTGCAATGATCGTTTNTTGAGAGGCCAATNTAGCGCTATAAGATGNTGGNTCACCGAAGGNCAGTTACANAAGCANCAGGTTACA]

[+] EMBL OSS1766A             [GNGTCANACAGGAGAATATACACAAGGTGCAGAGCTTGAAACTCCTACTGGATCTGGAACTATCGTTGATGATTATGTGGAGCAAGCTGTAGGTTTACAGCAAACTGGCCGGGATGCTAGAGAAAATGTACACGGTGATGATTCGGCTGGTAAAATGGATTTAGAGCAGCAGAATGCCATTTCTGGTCATAGTCTTGGAACAGCATATGAAGTTGTAAGGGCTCCTNAAAGAATTATCGAGAAAGACTCCAGGCTTAGATATGCTCCAAAGATAGTACCAAAGTCTGTCAAAACCTTCTNCGATAGTCCTCTGGATCGNACATCTGTTAGTAAGAGGCCTGATNCTCTGAAGCTTGGCATGAGTATTAACCAGAAGGCTAAGCTTGCAATGATCGTTTNTTGAGAGGCCAATNTAGCGCTATAAGATGNTGGNTCACCGAAGGNCAGTTACANAAGCANCAGGTTACA]




>consensus_11121#2
GNGTCANACAGGAGAATATACACAAGGTGCAGAGCTTGAAACTCCTACTGGATCTGGAAC
TATCGTTGATGATTATGTGGAGCAAGCTGTAGGTTTACAGCAAACTGGCCGGGATGCTAG
AGAAAATGTACACGGTGATGATTCGGCTGGTAAAATGGATTTAGAGCAGCAGAATGCCAT
TTCTGGTCATAGTCTTGGAACAGCATATGAAGTTGTAAGGGCTCCTNAAAGAATTATCGA
GAAAGACTCCAGGCTTAGATATGCTCCAAAGATAGTACCAAAGTCTGTCAAAACCTTCTN
CGATAGTCCTCTGGATCGNACATCTGTTAGTAAGAGGCCTGATNCTCTGAAGCTTGGCAT
GAGTATTAACCAGAAGGCTAAGCTTGCAATGATCGTTTNTTGAGAGGCCAATNTAGCGCT
ATAAGATGNTGGNTCACCGAAGGNCAGTTACANAAGCANCAGGTTACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11121#0      AGTTACGCAACGAATCAATCACCCCCGCGGTGATTACCACTGCAAACACCACCACCGCCG 60
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      CCGTGGGAACCGGCATTAGAAGCGAGGAGACGACTAATCAAGCCACCAAAAAAAAATTTA 120
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      AGACCCCTCCCTCCTCCTTGCCGCACTCACCACCAACCTGTAATGTGAACCTGCTGCTCT 180
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      GCGAGTTATCGGTGTTCATCCAGCAGCGAGAGCGGTGGCAGTGGTACTAGGAGTCTAGGA 240
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      CGAGTGGTGGGTACTGGTTGTACTGGTGGTACGGCGGTTTCAGCGGCGGAGTTCTCGCGG 300
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      GATTGTCTCGTTCGTCTGATCCGGCGCTGGAGGACGGCGGTTGGTTTCTTTTTCTTCTGC 360
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      TGCTTCGCGAGCGGGTGTGAGAGATCGGTTCCATGCGGGGGTCGCTGCTGCTGGCCTCGG 420
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      GCCGTCAGGGTTTGCAAGCGGAATCTACTCAACTATGACGGATTAGCCTCAAAATAAATG 480
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      ATGGCAGCTGAGGTTAATCAAACTTTTTTCGCGTGGTCACAAGGAGAACCAACTGAACGG 540
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      GACGGTTCTCAAGGTGTATCTGTGTCCCAGAAAATTGATCATGGTTCCATCTCCTTTGGA 600
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      AGATTCGAATTGGAGTCTCTATCATGGGAAAAGTGGTCAGTATTTTCTGATGACAAGCGT 660
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      CATGAAGAATTTGGCAAATTCAATGGTTTAGTTGCACAGAAGAAGGCATATTTTGAAGAG 720
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      TATTACAGGAAAATTAGAGAACTGAAGGCACAGCAGCAAAACCAGCAAACTGAACTTATT 780
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      TTGGAATACAGTGGTGATGGCAGTGATTCGAGTCAGACAGGAGAATATACACAAGGTGCA 840
consensus_11121#2      -----------------------------GNGTCANACAGGAGAATATACACAAGGTGCA 31
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      GAGCTTGAAACTCCTACTGGATCTGGAACTATCGTTGATGATTATGTGGAGCAAGGTGCA 900
consensus_11121#2      GAGCTTGAAACTCCTACTGGATCTGGAACTATCGTTGATGATTATGTGGAGCAAG----- 86
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      CATGAAACTACCTCTGAGCAAGGATTGACATGTTATGATGACCATGAAAACGAGAACTTC 960
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      AATGCAGAATTCTCCTCATCCAATATTTCTTCTTCAGCTGTAGGTTTACAGCAAACTGGC 1020
consensus_11121#2      -------------------------------------CTGTAGGTTTACAGCAAACTGGC 109
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      CGGGATGCTAGAGAAAATGTACACGGTGATGATTCGGCTGGTAAAATGGATTTAGAGCAG 1080
consensus_11121#2      CGGGATGCTAGAGAAAATGTACACGGTGATGATTCGGCTGGTAAAATGGATTTAGAGCAG 169
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      CAGAATGCCATTTCTGGTCATAGTCTTGGAACAGCATATGAAGTTGTAAGGGCTCCTAAA 1140
consensus_11121#2      CAGAATGCCATTTCTGGTCATAGTCTTGGAACAGCATATGAAGTTGTAAGGGCTCCTNAA 229
consensus_11121#1      ------------------AATTCCCTTGGACCTG---ACTGGACTGAAGGAG-----TAG 34
                                          **   ****** * *   *      ** * * *      * 

consensus_11121#0      AGAATTATCGAGAAAGACTCCAGGCTTAGATATGCTCCAAAGATAGTACCAAAGTCTGTC 1200
consensus_11121#2      AGAATTATCGAGAAAGACTCCAGGCTTAGATATGCTCCAAAGATAGTACCAAAGTCTGTC 289
consensus_11121#1      AAAATTATCGAGAAAGACTCCAGGCTTAGATATGCTCCAAAGATAGTACCAAAGTCTGTC 94
                       * **********************************************************

consensus_11121#0      AAAACCTCCTCCGATAGTCCTCTGGATCGCACATCTGTTAGTAAGAGGCCTGATTCTCTG 1260
consensus_11121#2      AAAACCTTCTNCGATAGTCCTCTGGATCGNACATCTGTTAGTAAGAGGCCTGATNCTCTG 349
consensus_11121#1      AAAACCTCCTCCGATAGTCCTCTGGATCGCACATCTGTTAGTAAGAGGCCTGATTCTCTG 154
                       ******* ** ****************** ************************ *****

consensus_11121#0      AAGCTTGGCATGAGTATTAACCAGAAGGCTAAGACTGACAATGATCGTTTATTGAGAGGA 1320
consensus_11121#2      AAGCTTGGCATGAGTATTAACCAGAAGGCTAAGCTTG-CAATGATCGTTTNTTGAGAGGC 408
consensus_11121#1      AAGCTTGGCATGAGTATTAACCAGAAGGCTAAGACTGACAATGATCGTTTATTGAGAGGA 214
                       *********************************  ** ************ ******** 

consensus_11121#0      CCAAATGTAGCGCCTCATAAGATGTCTGGATCAACCGAAAGGAACAAGCTTACAACAAAA 1380
consensus_11121#2      C--AATNTAGCGC--TATAAGATGN-TGGNTCA-CCGAAGGNCA-------GTTACANAA 455
consensus_11121#1      CCAAATGTAGCGCCTCATAAGATGTCTGGATCAACCGAAAGGAACAAGCTTACAACAAAA 274
                       *  *** ******   ********  *** *** ***** *  *          *** **

consensus_11121#0      CAAACAGGTGTCAGAAGACCTTCCTCTGCATCCTCACAACGGCCCTCTGTGGGAGAGCGG 1440
consensus_11121#2      GCANCAGGTTACA----------------------------------------------- 468
consensus_11121#1      CAAACAGGTGTCAGAAGACCTTCCTCTGCATCCTCACAACGGCCCTCTGTGGGAGAGCGG 334
                         * *****  **                                               

consensus_11121#0      CACCGGATAGCCAGGGAGAGCATAAAAAAGCCTGCTGATGTTTCCACCCCACGGCGTCCT 1500
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      CACCGGATAGCCAGGGAGAGCATAAAAAAGCCTGCTGATGTTTCCACCCCACGGCGTCCT 394
                                                                                   

consensus_11121#0      TCCACTGCAGAAAGGCACCCTGTCACCACAGAGCGTGCAAGGAAGCAAGCCGATGTAGAT 1560
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      TCCACTGCAGAAAGGCACCCTGTCACCACAGAGCGTGCAAGGAAGCAAGCCGATGTAGAT 454
                                                                                   

consensus_11121#0      ACACCACGCCGACCATCTACTTCTGAAAGACGTGCTGTCAACAAAGGGAGTGCTGACATG 1620
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ACACCACGCCGACCATCTACTTCTGANAGACGTGCTGTCAACAAAGGGGAGTGCTGACAT 514
                                                                                   

consensus_11121#0      ACCACTACACATCGCCCCTCTACTGGAGAAAGACGATCTGTTACCAGGGAGAGTGTTCTG 1680
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      GACCACTACACATCGCCCCTCTACTGGAGAAAGACGA----------------------- 551
                                                                                   

consensus_11121#0      AAGATGGACGTAAGAACACCTAGCAAGACAAGGCCTACTATGACGCAACTGAAGGGTGCA 1740
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      ACAACCACAGTGGGTATTGTTAAAAAGGCAGGCACTCCAAATGCTTCTAAAAGCATCAAC 1800
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      ATGGGAACAAAAAGCAATATCAGAGAACTGGAAGGACCTTCGAAAGTGGGCAGACACTCT 1860
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      GTTGGGTCAAAAATTACGGACCTGCAAATTGCTGGCAAACAGAAATCAAGCTCTGTCCAC 1920
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      CTTCCTCCACGGAAACTATTGAGTTCCAGTATTGGAGAACCAGCACTGCAAACCTTTACA 1980
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      AGGCCAAAAAAGAAAGATGTTGCAGCGCAATCTCGAGCATCTACATCGAAGAGAGCAATG 2040
consensus_11121#2      ------------------------------------------------------------
consensus_11121#1      ------------------------------------------------------------
                                                                                   

consensus_11121#0      ACTTTGCACACTGGAAACGTAAAGGGGAGG 2070
consensus_11121#2      ------------------------------
consensus_11121#1      ------------------------------