These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1129 fasta sequence [CCTTCTCCCTTCCGCCTCCTTCCATCCCCTCCCCTCCCCTCCCACGCGACGGCGGCGGCGG-CGGCGGCCGGAGCGCGCGCCTCCTTCCCACCACCGGGCTCCATCTCGCCTCGAATCGAAGGGTAGTAGTAGTAGTAGAGGATACACGATGCAGTCTCTGCTGCGGCGCGTCTATCTTGCCGGAAGCCATGGCTCCGCGGCGAAGCTCTTGGACCGTGCAGCTTCTGGAGTCGCGCAGTCGGGTGCTAACCTGCTG-TCCATCAAGCACCT-GAGT-TCTTGCAGCTGGATTCGTCCATTTG-GGAACTCAATCGTC-TCCGGTGATAGTGTTCATTCCCATGGGTTCTGCGTGAATACCATGCCAATGAGGGGTCTATCAACAGTGGGGAGTGCTGAGGTTTCTGTCGAGGAGGAAAGTTCTGACTCTCCAGGAGTCGAGCATCCTCCGCGCATCAAGTTTAAGAGGCCTGACAAGACGGCCAGGCACATTATGAATATCTTGAACAAGGAGGCTGTTGACAAGGTCCGTGGGGAAAGAGAGATTCCTGATGTGCAGCCTGGATGTATTATCCAAATGAGATTGCAAGTTCCTGAGAACAAGCGTCGTGAGTCTACGTTGAAAGGCATTGTCATAGGAAGACGTAATGCTGGGATCAATACAACTTTCAGACTGCGTAGATTAGTAGCTGGTGTTGGAGTCGAGTCTGTCTTTCCACTTTACTCTCCAAACATCAAGGAAATCAAGGTCTTGGACAGGAAGAAAGTCAGGAGAGCAAAGTTGTATTACCTGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGCTTTAGCTCCCCTTTTATTTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCACATTTTGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCAAGTACACAAGCAGTGCAGGCAGCAATCTGCTCCCGTGGTTCTGAATTGACAGCGTTGATATCTTATATTTTATGTTGTAACCTCTTTCTGATGATAGAAATGACCACATATCAAGCTCCCCGCATTAAAGACTTGTTTGTGTTTAAGATAAAAATAGTTTGAAGCTTAGT] [+] EMBL CF331319 [CCTTCTCCCTTCCGCCTCCTTCCATCCCCTCCCCTCCCCTCCCACGCGACGGCGGCGGCGGNCGGCGGCCGGAGCGCGCGCCTCCTTCCCACCACCGGGCTCCATCTCGCCTCGAATCGAAGGGTAGTAGTAGTAGTAGAGGATACACGATGCAGTCTCTGCTGCGGCGCGTCTATCTTGCCGGAAGCCATGGCTCCGCGGCGAAGCTCTTGGACCGTGCAGCTTCTGGAGTCGCGCAGTCGGGTGCTAACCTGCTG TCCATCAAGCACCT GAGT TCTTGCAGCTGGATTCGTCCATTTG GGAACTC ] [+] EMBL CF305201 [ CTTCCATCCCCTCCCCTCCCCTCCCACGCGACGGCGGCGGCGG CGGCGGCCGGAGCGCGCGCCTCCTTCCCACCACCGGGCTCCATCTCGCCTCGAATCGAAGGGTAGTAGTAGTAGTAGAGGATACACGATGCAGTCTCTGCTGCGGCGCGTCTATCTTGCCGGAAGCCATGGCTCCGCGGCGAAGCTCTTGGACCGTGCAGCTTCTGGAGTCGCGCAGTCGGGTGCTAACCTGCTG TCCATCAAGCACCT GAGT TCTTGCAGCTGGATTCGTCCATTTG GGAACTCAATCGTC TCCGGTGATAGTGTTCATTCCCATGGGTTCTGCGTGAATACCATGCCAATGAGGGGTCTATCAACAGTGGGGAGTGCTGAGGTTTCTGTCGAGGAGGAAAGTTCTGACTCTCCAGGAGTCGAGCATCCTCCGCGCATCAAGTTTAAGAGGCCTGACAAGACGGCCAGGCACATTATGAATATCTTGAACAAGGAGGCTGTTGACAAGGTCCGTGGGGAAAGAGAGATTCC ] [+] EMBL AK073514 [ TTCCATCCCCTCCCCTCCCCTCCCACGCGACGGCGGCGGCGG CGGCGGCCGGAGCGCGCGCCTCCTTCCCACCACCGGGCTCCATCTCGCCTCGAATCGAAGGGTAGTAGTAGTAGTAGAGGATACACGATGCAGTCTCTGCTGCGGCGCGTCTATCTTGCCGGAAGCCATGGCTCCGCGGCGAAGCTCTTGGACCGTGCAGCTTCTGGAGTCGCGCAGTCGGGTGCTAACCTGCTG TCCATCAAGCACCT GAGT TCTTGCAGCTGGATTCGTCCATTTG GGAACTCAATCGTC TCCGGTGATAGTGTTCATTCCCATGGGTTCTGCGTGAATACCATGCCAATGAGGGGTCTATCAACAGTGGGGAGTGCTGAGGTTTCTGTCGAGGAGGAAAGTTCTGACTCTCCAGGAGTCGAGCATCCTCCGCGCATCAAGTTTAAGAGGCCTGACAAGACGGCCAGGCACATTATGAATATCTTGAACAAGGAGGCTGTTGACAAGGTCCGTGGGGAAAGAGAGATTCCTGATGTGCAGCCTGGATGTATTATCCAAATGAGATTGCAAGTTCCTGAGAACAAGCGTCGTGAGTCTACGTTGAAAGGCATTGTCATAGGAAGACGTAATGCTGGGATCAATACAACTTTCAGACTGCGTAGATTAGTAGCTGGTGTTGGAGTCGAGTCTGTCTTTCCACTTTACTCTCCAAACATCAAGGAAATCAAGGTCTTGGACAGGAAGAAAGTCAGGAGAGCAAAGTTGTATTACCTGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGCTTTAGCTCCCCTTTTATTTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCACATTTTGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCAAGTACACAAGCAGTGCAGGCAGCAATCTGCTCCCGTGGTTCTGAATTGACAGCGTTGATATCTTATATTTTATGTTGTAACCTCTTTCTGATGATAGAAATGACCACATATCAAGCTCCCCGCATTAAAGACTTGTTTGTGTTTAAGATAAAAATAGTTTGAAGCTTAGT] [+] EMBL AK060003 [ TCCCCTCCCCTCCCCTCCCACGCGACGGCGGCGGCGG CGGCGGCCGGAGCGCGCGCCTCCTTCCCACCACCGGGCTCCATCTCGCCTCGAATCGAAGGGTAGTAGTAGTAGTAGAGGATACACGATGCAGTCTCTGCTGCGGCGCGTCTATCTTGCCGGAAGCCATGGCTCCGCGGCGAAGCTCTTGGACCGTGCAGCTTCTGGAGTCGCGCAGTCGGGTGCTAACCTGCTG TCCATCAAGCACCT GAGT TCTTGCAGCTGGATTCGTCCATTTG GGAACTCAATCGTC TCCGGTGATAGTGTTCATTCCCATGGGTTCTGCGTGAATACCATGCCAATGAGGGGTCTATCAACAGTGGGGAGTGCTGAGGTTTCTGTCGAGGAGGAAAGTTCTGACTCTCCAGGAGTCGAGCATCCTCCGCGCATCAAGTTTAAGAGGCCTGACAAGACGGCCAGGCACATTATGAATATCTTGAACAAGGAGGCTGTTGACAAGGTCCGTGGGGAAAGAGAGATTCCTGATGTGCAGCCTGGATGTATTATCCAAATGAGATTGCAAGTTCCTGAGAACAAGCGTCGTGAGTCTACGTTGAAAGGCATTGTCATAGGAAGACGTAATGCTGGGATCAATACAACTTTCAGACTGCGTAGATTAGTAGCTGGTGTTGGAGTCGAGTCTGTCTTTCCACTTTACTCTCCAAACATCAAGGAAATCAAGGTCTTGGACAGGAAGAAAGTCAGGAGAGCAAAGTTGTATTACCTGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGCTTTAGCTCCCCTTTTA TTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCACATTTTGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCAAGTACACAAGCAGTGCAGGCAGCAATCTGCTCC ] [+] EMBL CA758415 [ CACGCGACGGCGGCGGCGG CGGCGGCCGGAGCGCGCGCCTCCTTCCCACCACCGGGCTCCATCTCGCCTCGAATCGAAGGGTAGTAGTAGTAGTAGAGGATACACGATGCAGTCTCTGCTGCGGCGCGTCTATCTTGCCGGAAGCCATGGCTCCGCGGCGAAGCTCTTGGACCGTGCAGCTTCTGGAGTCGCGCAGTCGGGTGCTAACCTGCTG TCCATCAAGCACCT GAGT TCTTGCAGCTGGATTCGTCCATTTG GGAACTCAATCGTC TCCGGTGATAGTGTTCATTCCCATGGGTTCTGCGTGAATACCATGCCAATGAGGGGTCTATCAACAGTGGGGAGTGCTGAGGTTTCTGTCGAGGAGGAAAGTTCTGACTCTCCTGGAGTCGAGCATCCTCCGCGCATCAAGTTTAAGAGGCCTGACAAGACGGCCAGGCACATTATGAATATCTTGAACAAGGAGGCTGTTGACAAGGTCCGTGGGGAAAGAGAGATTCCTGATGTGCAGCCTGGATGTATTATCCAAATGAGATTGCAAGTTCCTGAGAACAAGCGTCGTGAGTCTACGTTGAAAGGCATTGTCATAGGAAGACGTAATGCTGGGATCAATACCACTTTC ] [+] EMBL OS0149A [ GTCTCTGCTGCGGCGCGTCTATCTTNCCGGAAGCCATGGCTCCGCGGCGAAG TCTTGGACCGTGCAGCTTCTGGAGTCGCGCAGTCGGGTGCTAACCTGCTGATCCATCAAGCACCTCGAGTATCTTGCAGCTGGATTCGTCCATTTGAGGAACTCAATCGTCATCCGGTGATAGTGTTCATTCCCATGGGTTCTGCGTGAATACCATGCCAATGAGGGGTCTATCAACAGTGGGGAGTGCTGAGGTCTCTGTCGAGGAGGAAAGTTCTGACTATCCAGGAGTCGAGCATCCACCGNGCATCAAGTTTAAGAG ] [-] EMBL CF331320 [ GGGGTCTATCAACAGTGGGGAGTGCTGAGGTTTCTGTCGAGGAGGAAAGTTCTGACTCTCCAGGAGTCGAGCATCCTCCGCGCATCAAGTTTAAGAGGCCTGACAAGACGGCCAGGCACATTATGAATATCTTGAACAAGGAGGCTGTTGACAAGGTCCGTGGGGAAAGAGAGATTCCTGATGTGCAGCCTGGATGTATTATCCAAATGAGATTGCAAGTTCCTGAGAACAAGCGTCGTGAGTTTACGTTGAAAGGCATTGTCATAGGAAGACGTAATGCTGGGATCAATACAACTTTCAGACTGCGTAGATTAGTAGCTGGTGTTGGAGTCGAGTCTGTCTTTCCACTTTACTCTCCAAACATCAAGGAAATCAAGGTTTAGGACAGGAAGAAAGTCAGGAGAGCAAAGTTGTATTACCTGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGCTTTAGCTCCCCTTTTATTTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCACATTTTGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCAAGTACACAAGCAGTGCAGGCAGCAATCTGCTCCCGTGGTTTTGAAaaaaaa ] consensusID : consensus_11123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence [GTCAGGAGAGGCAAAGTTGTATTACTGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGCTTTAGCTCCCCTTTTATTTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCACATTTTGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCAAGTACACAAGCAGTGCAGGCAGCAATCTGCTCCCGTGGTTCTGAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU083421 [GTCAGGAGAGGCAAAGTTGTATTACTGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGCTTTAGCTCCCCTTTTATTTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCACATTTTGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCAAGTACACAAGCAGTGCAGGCAGCAATCTGCTCCCGTGGTTCTGAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11123#0 CCTTCTCCCTTCCGCCTCCTTCCATCCCCTCCCCTCCCCTCCCACGCGACGGCGGCGGCG 60 consensus_11123#1 ------------------------------------------------------------ consensus_11123#0 GCGGCGGCCGGAGCGCGCGCCTCCTTCCCACCACCGGGCTCCATCTCGCCTCGAATCGAA 120 consensus_11123#1 ------------------------------------------------------------ consensus_11123#0 GGGTAGTAGTAGTAGTAGAGGATACACGATGCAGTCTCTGCTGCGGCGCGTCTATCTTGC 180 consensus_11123#1 ------------------------------------------------------------ consensus_11123#0 CGGAAGCCATGGCTCCGCGGCGAAGCTCTTGGACCGTGCAGCTTCTGGAGTCGCGCAGTC 240 consensus_11123#1 ------------------------------------------------------------ consensus_11123#0 GGGTGCTAACCTGCTGTCCATCAAGCACCTGAGTTCTTGCAGCTGGATTCGTCCATTTGG 300 consensus_11123#1 ------------------------------------------------------------ consensus_11123#0 GAACTCAATCGTCTCCGGTGATAGTGTTCATTCCCATGGGTTCTGCGTGAATACCATGCC 360 consensus_11123#1 ------------------------------------------------------------ consensus_11123#0 AATGAGGGGTCTATCAACAGTGGGGAGTGCTGAGGTTTCTGTCGAGGAGGAAAGTTCTGA 420 consensus_11123#1 ------------------------------------------------------------ consensus_11123#0 CTCTCCAGGAGTCGAGCATCCTCCGCGCATCAAGTTTAAGAGGCCTGACAAGACGGCCAG 480 consensus_11123#1 ------------------------------------------------------------ consensus_11123#0 GCACATTATGAATATCTTGAACAAGGAGGCTGTTGACAAGGTCCGTGGGGAAAGAGAGAT 540 consensus_11123#1 ------------------------------------------------------------ consensus_11123#0 TCCTGATGTGCAGCCTGGATGTATTATCCAAATGAGATTGCAAGTTCCTGAGAACAAGCG 600 consensus_11123#1 ------------------------------------------------------------ consensus_11123#0 TCGTGAGTCTACGTTGAAAGGCATTGTCATAGGAAGACGTAATGCTGGGATCAATACAAC 660 consensus_11123#1 ------------------------------------------------------------ consensus_11123#0 TTTCAGACTGCGTAGATTAGTAGCTGGTGTTGGAGTCGAGTCTGTCTTTCCACTTTACTC 720 consensus_11123#1 ------------------------------------------------------------ consensus_11123#0 TCCAAACATCAAGGAAATCAAGGTCTTGGACAGGAAGAAAGTCAGGAGAG-CAAAGTTGT 779 consensus_11123#1 ----------------------------------------GTCAGGAGAGGCAAAGTTGT 20 ********** ********* consensus_11123#0 ATTACCTGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGCTTTAGCTCCCCTTTTA 839 consensus_11123#1 ATTAC-TGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGCTTTAGCTCCCCTTTTA 79 ***** ****************************************************** consensus_11123#0 TTTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCAC 899 consensus_11123#1 TTTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCAC 139 ************************************************************ consensus_11123#0 ATTTTGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCA 959 consensus_11123#1 ATTTTGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCA 199 ************************************************************ consensus_11123#0 AGTACACAAGCAGTGCAGGCAGCAATCTGCTCCCGTGGTTCTGAATTGACAGCGTTGATA 1019 consensus_11123#1 AGTACACAAGCAGTGCAGGCAGCAATCTGCTCCCGTGGTTCTGAAAAAAAAAAAAAAAAA 259 ********************************************* * * * * consensus_11123#0 TCTTATATTTTATGTTGTAACCTCTTTCTGATGATAGAAATGACCACATATCAAGCTCCC 1079 consensus_11123#1 AAAAAAA----------------------------------------------------- 266 * * consensus_11123#0 CGCATTAAAGACTTGTTTGTGTTTAAGATAAAAATAGTTTGAAGCTTAGT 1129 consensus_11123#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||