These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1247 fasta sequence [TCCTTTTTTTTTAAACGCAAACGCCATCGATTTTATAAACTTGATCTGATATGAAATCAGTGATCAAAGTTTCAAAAGTTTATCTAAATTTTACCTTAATAAACTTAAATATTTATGACTACATGTTTGTGCGTGATCGGACCAAATCCACACTCCTTCGTTCATTTGCAACGAATCAGTCATCAAAACGCTAAATAAACAGGCCTCGTGTCGTGTCACACGCCGCCGGTCTTTTCTCCGCCGCCGTCGCCGTCGCCGCCGTGGTGGTGGCGGCGCTTGGCCCAAAACCTGAGGCGGAGCTCCCTTCCCTCGAGCATCTTCTCCACCTCCTCGATGGGGAGGCCCTTGGTCTCCGGCACGCAGACGAGCACGAACGCGAGTGCCGCCACGGACAGCCCGCCGAAGATGAGGAACGTCCACGCCGCCCCGATGGCGTCCGTCAGCGACAGGAACGACTGCGCCACCGCCAGGTTCGACACCCAGTTCGCCGTCGCCGCCGCGCCGCCGCACACGCCGCGGTGCCGCAGCGGGTAGACCTCCGAGTTCACGATCCACGGCACCGTCCCCATCCCCGGCGAGAAGGCGGCGATGTACAGCGCCAGCCCCGCCATCGCCAGCCACCCGTACCTGCTCGGGCACCCCCGCGTGTACCACTCCCTCCCCTCGCCGCGGCACGCGTCGCGAGCCGTGGCGTTCGACGCCGCCGCCGCCGCCGCCAGGCACGCCCCGGCGCGCAGCTTGTCGCCGCCGCCCGCCGCGCAGAACCCACACCCCGCCGACGCCGCCGCTGCCTTGAGACACCTCGTGCAGTCCCAGAACGACGACGACGAGCGGGAGGAGTAGTCCGGGCATGTGAGCGCGCCGCCGTGGAAGTGGGCGGTCTCGGCGGCGCCGACGGGCGGGGAGTGGGAGGTGGCCTCGTGGAACACGGCGGAGAGGAGGGCGAGGGAGAGGATGACGCCGGCGAGGCTGATGACGAGCAGCTTGCGCCGCCCGGTGCGGTCGATGAAGTAGATGCTGACGAGGGAGCCGGCGGCGTTGAGGCCGGCGGTGACGAGGGACAGCGCGAGCGCCGTCTGGTTGGAGGCGAACCCGGCGAGCTGCACGATGGTGGGGCTGTAGTACATCACCGTGTTGATCCCCACCAGCTGCTGGAACACCTGCAGCCCGACGCCGGCGACCAGCCCCCGCCGCACCGTCGCCGTCGTCATCAGCAGCGCCACCAGGCTCGTCTTCTCCGACGAGCT] [+] EMBL CB671547 [TCCTTTTTTTTTAAACGCAAACGCCATCGATTTTATAAACTTCATCTGATATGAAATCAGTGATCAAAGTTTCAAAAGTTTATCTAAATTTTACCTTAATAAACTTAAATATTTATGACTACATGTTTGTGCGTGATCGGACCAAATCCACACTCCTTCGTTCATTTGCAACGAATCAGTCATCAAAACGCTAAATAAACAGGCCTCGTGTCGTGTCACACGCCGCCGGTCTTTTCTCCGCCGCCGTCGCCGTCGCCGCCGTGGTGGTGGCGGCGCTTGGCCCAAAACCTGAGGCGGAGCTCCCTTCCCTCGAGCATCTTCTCCACCTCCTCGATGGGGAGGCCCTTGGTCTCCGGCACGCAGACGAGCACGAACGCGAGTGCCGCCACGGACAGCCCGCCGAAGATGAGGAACGTCCACGCCGCCCCGATGGCGTCCGTCAGCGACAGGAACGACTGCGCCACCGCCAGGTTCGACACCCAGTTCGCCGTCGCCGCCGCGCCGCCGCACACGCCGCGGTGCCGCAGCGGGTAGACCTCCGAGTTCACGATCCACGGCACCGTCCCCATCCCCGGCGAGAAGGCGGCGATGTACAGCGCCAGCCCCGCCATCGCCAGCCACCCGTACCTGCTCGGGCACCCCCGCGTGTACCACTCCCTCCCCTCGCCGCGGCACGCGTCGCGAGCCGTGGCGTTCGACGCCGCCGCCGCCGCCGCCAGGCACGCCCCGGCGCGCAGCTTGTCGCCGC ] [+] EMBL CB668636 [ ACGCAAACGCCATCGATTTTATAAACTTGATCTGATATGAAATCAGTGATCAAAGTTTCAAAAGTTTATCTAAATTTTACCTTAATAAACTTAAATATTTATGACTACATGTTTGTGCGTGATCGGACCAAATCCACACTCCTTCGTTCATTTGCAACGAATCAGTCATCAAAACGCTAAATAAACAGGCCTCGTGTCGTGTCACACGCCGCCGGTCTTTTCTCCGCCGCCGTCGCCGTCGCCGCCGTGGTGGTGGCGGCGCTTGGCCCAAAACCTGAGGCGGAGCTCCCTTCCCTCGAGCATCTTCTCCACCTCCTCGATGGGGAGGCCCTTGGTCTCCGGCACGCAGACGAGCACGAACGCGAGTGCCGCCACGGACAGCCCGCCGAAGATGAGGAACGTCCACGCCGCCCCGATGGCGTCCGTCAGCGACAGGAACGACTGCGCCACCGCCAGGTTCGACACCCAGTTCGCCGTCGCCGCCGCGCCGCCGCACACGCCGCGGTGCCGCAGCGGGTAGACCTCCGAGTTCACGATCCACGGCACCGTCCCCATCCCCGGCGAGAAGGCGGCGATGTACAGCGCCAGCCCCGCCATCGCCAGCCACCCGTACCTGCTCGGGCACCCCCGCGTGTACCACTCCCTCCCCTCGCCGCGGCACGCGTCGCGAGCCGTGGCGTTCGACGCCGCCGCCGCCGCCGCCAGGCACGCCCCGGCGCGCAGCTTGTCGCCGCCGCCCGCCGCGCAGAACCCACACCCCGCCG ] [+] EMBL CB661106 [ CAAACGCCATCGATTTTATAAACTTGATCTGATATGAAATCAGTGATCAAAGTTTCAAAAGTTTATCTAAATTTTACCTTAATAAACTTAAATATTTATGACTACATGTTTGTGCGTGATCGGACCAAATCCACACTCCTTCGTTCATTTGCAACGAATCAGTCATCAAAACGCTAAATAAACAGGCCTCGTGTCGTGTCACACGCCGCCGGTCTTTTCTCCGCCGCCGTCGCCGTCGCCGCCGTGGTGGTGGCGGCGCTTGGCCCAAAACCTGAGGCGGAGCTCCCTTCCCTCGAGCATCTTCTCCACCTCCTCGATGGGGAGGCCCTTGGTCTCCGGCACGCAGACGAGCACGAACGCGAGTGCCGCCACGGACAGCCCGCCGAAGATGAGGAACGTCCACGCCGCCCCGATGGCGTCCGTCAGCGACAGGAACGACTGCGCCACCGCCAGGTTCGACACCCAGTTCGCCGTCGCCGCCGCGCCGCCGCACACGCCGCGGTGCCGCAGCGGGTAGACCTCCGAGTTCACGATCCACGGCACCGTCCCCATCCCCGGCGAGAAGGCGGCGATGTACAGCGCCAGCCCCGCCATCGCCAGCCACCCGTACCTGCTCGGGCACCCCCGCGTGTACCACTCCCTCCCCTCGCCGCGGNACGCGTCGCGAGCCGTGGCGTTCGACGCCGCCGCCGCCGCCGCCAGGCACGCCCCGGCGCGCAGCTTGTCGCCGC ] [-] EMBL CB671546 [ CCGCCGCACACGCCGCGGTGCCGCAGCGGGTAGACCTCCGAGTTCACGATCCACGGCACCGTCCCCATCCCCGGCGAGAAGGCGGCGATGTACAGCGCCAGCCCCGCCATCGCCAGCCACCCGTACCTGCTCGGGCACCCCCGCGTGTACCACTCCCTCCCCTCGCCGCGGCACGCGTCGCGAGCCGTGGCGTTCGACGCCGCCGCCGCCGCCGCCAGGCACGCCCCGGCGCGCAGCTTGTCGCCGCCGCCCGCCGCGCAGAACCCACACCCCGCCGACGCCGCCGCTGCCTTGAGACACCTCGTGCAGTCCCAGAACGACGACGACGAGCGGGAGGAGTAGTCCGGGCATGTGAGCGCGCCGCCGTGGAAGTGGGCGGTCTCGGCGGCGCCGACGGGCGGGGAGTGGGAGGTGGCCTCGTGGAACACGGCGGAGAGGAGGGCGAGGGAGAGGATGACGCCGGCGAGGCTGATGACGAGCAGCTTGCGCCGCCCGGTGCGGTCGATGAAGTAGATGCTGACGAGGGAGCCGGCGGCGTTGAGGCCGGCGGTGACGAGGGACAGCGCGAGCGCCGTCTGGTTGGAGGCGAACCCGGCGAGCTGCACGATGGTGGGGCTGTAGTACATCACCGTGTTGATCCCCACCAGCTGCTGGAACACCTGCAGCCCGACGCCGGCGACCAGCCCCCGCCGCACCGTCGCCGTCGTCATCAGCAGCGCCACCAGGCTCGTCTTCTCCGACGAGCT] consensusID : consensus_11124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [TTTTTTCATAAACTTGATGTGATATGAAATCCTTGATCAAAGTTTTAAAAGTTTAGGTAAAATTTACCTTAAACTTCAATATTTATGACTAGAAGGGACTACATGTTTGTGCATGAAAGGACCAAATAATCCACAATCCTTCCTTCGTTTGCAACAAATCAGTCATCCCAAAAAGCTTGTAGTACTAAATAAACTGGCGTCGTACGTGTCGTGTCACACGCCGCCGGTCTTTTCGCCGCCGTCGTCGCCGTGGTGGTGGCGGCGCTTGGCCCAGAACCTGAGGCGGAGCTCCCTCTTGTCGAGCATCTTCTCCACCTCCTCGCATGGGGAGGCCTTGGTCTCCGGCACGCAGATGAGCACGAACGCGAGCGCCGCCAGGACAGCCGCCGAAGATGAGGAACGTCCACGCCGCCCGATGGCCTCCGTCAGCGA] [-] EMBL BI813423 [TTTTTTCATAAACTTGATGTGATATGAAATCCTTGATCAAAGTTTTAAAAGTTTAGGTAAAATTTACCTTAAACTTCAATATTTATGACTAGAAGGGACTACATGTTTGTGCATGAAAGGACCAAATAATCCACAATCCTTCCTTCGTTTGCAACAAATCAGTCATCCCAAAAAGCTTGTAGTACTAAATAAACTGGCGTCGTACGTGTCGTGTCACACGCCGCCGGTCTTTTCGCCGCCGTCGTCGCCGTGGTGGTGGCGGCGCTTGGCCCAGAACCTGAGGCGGAGCTCCCTCTTGTCGAGCATCTTCTCCACCTCCTCGCATGGGGAGGCCTTGGTCTCCGGCACGCAGATGAGCACGAACGCGAGCGCCGCCAGGACAGCCGCCGAAGATGAGGAACGTCCACGCCGCCCGATGGCCTCCGTCAGCGA] consensusID : consensus_11124#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 154 fasta sequence [GGCGGCGTGTCGACACTGACACAGTACGACGTCCAGTATCTATTGTAGTACGTACAAGACTATCTCTTGGGATAGCCTGATTTGTATGCCATACGCAAGGAAGGTATTGTGGATTATTTGGTCCTTTCATCGCACAAACAGTGTAGTCCCTTCT] [+] EMBL BI809227 [GGCGGCGTGTCGACACTGACACAGTACGACGTCCAGTATCTATTGTAGTACGTACAAGACTATCTCTTGGGATAGCCTGATTTGTATGCCATACGCAAGGAAGGTATTGTGGATTATTTGGTCCTTTCATCGCACAAACAGTGTAGTCCCTTCT] consensusID : consensus_11124#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 132 fasta sequence [TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCTAAATTTTACCTTAATAAACTTAAATATTTATGGCTACATGTTTGTGCGTGATCGGACAAAATCCATACTCCTTTAATCCAT] [-] EMBL CF322168 [TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCTAAATTTTACCTTAATAAACTTAAATATTTATGGCTACATGTTTGTGCGTGATCGGACAAAATCCATACTC ] [+] EMBL CF322167 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTAAATTTTACCTTAATAAACTTAAATTTTTATGACTACATGTTTGGGCGTGATCGGACCAAATCCATACTCCTTTAATCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11124#0 TCCTTTTTTTTTAAACGCAAACGCCATCGATTTTATAAACTTGATCTGATATGAAATCAG 60 consensus_11124#1 ---------------------------TTTTTTCATAAACTTGATGTGATATGAAATCCT 33 consensus_11124#3 ----------------------------TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 32 consensus_11124#2 -------------------------GGCGGCGTGTCGACACTGACACAGTACGACGTCCA 35 * * * * consensus_11124#0 TGATCAAAGTTTCAAAAGTTTATCTAA-ATTTTACCTTAATAAACTTAAATATTTATGAC 119 consensus_11124#1 TGATCAAAGTTTTAAAAGTTTAGGTAA-AATTTACCTTA---AACTTCAATATTTATGAC 89 consensus_11124#3 TTTTTTTTTTTT------TTTATCTAA-ATTTTACCTTAATAAACTTAAATATTTATGGC 85 consensus_11124#2 GTATCTATTGTA-----GTACGTACAAGACTATCTCTTGGGATAGCCTGATTTGTATGCC 90 * * * ** * * * *** * ** * **** * consensus_11124#0 TA----------CATGTTTGTGCGTGATCGGACCAAAT---CCACACTCCTT-CGTTCAT 165 consensus_11124#1 TAGAAGGGACTACATGTTTGTGCATGAAAGGACCAAATAATCCACAATCCTT-CCTTCGT 148 consensus_11124#3 TA----------CATGTTTGTGCGTGATCGGACAAAAT---CCATACTCCTT-TAATCCA 131 consensus_11124#2 ATACGCAAGGAAGGTATTGTGGATTATTTGGTCCTTTCATCGCACAAACAGTGTAGTCCC 150 * ** * * ** * ** * * * ** consensus_11124#0 TTGCAACGAATCAGTCATC--AAAACGCT---------AAATAAACAGGCCTCGT----G 210 consensus_11124#1 TTGCAACAAATCAGTCATCCCAAAAAGCTTGTAGTACTAAATAAACTGGCGTCGTACGTG 208 consensus_11124#3 T----------------------------------------------------------- 132 consensus_11124#2 TTCT-------------------------------------------------------- 154 * consensus_11124#0 TCGTGTCACACGCCGCCGGTCTTTTCTCCGCCGCCGTCGCCGTCGCCGCCGTGGTGGTGG 270 consensus_11124#1 TCGTGTCACACGCCGCCGGTCTTTTC---------GCCGCCGTCGTCGCCGTGGTGGTGG 259 consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 CGGCGCTTGGCCCAAAACCTGAGGCGGAGCTCCCTTCCCTCGAGCATCTTCTCCACCTCC 330 consensus_11124#1 CGGCGCTTGGCCCAGAACCTGAGGCGGAGCTCCCTCTTGTCGAGCATCTTCTCCACCTCC 319 consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 TCG-ATGGGGAGGCCCTTGGTCTCCGGCACGCAGACGAGCACGAACGCGAGTGCCGCCAC 389 consensus_11124#1 TCGCATGGGGAGGCC-TTGGTCTCCGGCACGCAGATGAGCACGAACGCGAGCGCCGCCA- 377 consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 GGACAGCCCGCCGAAGATGAGGAACGTCCACGCCGCCCCGATGGCGTCCGTCAGCGACAG 449 consensus_11124#1 GGACAGCC-GCCGAAGATGAGGAACGTCCACGCCGCCC-GATGGCCTCCGTCAGCGA--- 432 consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 GAACGACTGCGCCACCGCCAGGTTCGACACCCAGTTCGCCGTCGCCGCCGCGCCGCCGCA 509 consensus_11124#1 ------------------------------------------------------------ consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 CACGCCGCGGTGCCGCAGCGGGTAGACCTCCGAGTTCACGATCCACGGCACCGTCCCCAT 569 consensus_11124#1 ------------------------------------------------------------ consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 CCCCGGCGAGAAGGCGGCGATGTACAGCGCCAGCCCCGCCATCGCCAGCCACCCGTACCT 629 consensus_11124#1 ------------------------------------------------------------ consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 GCTCGGGCACCCCCGCGTGTACCACTCCCTCCCCTCGCCGCGGCACGCGTCGCGAGCCGT 689 consensus_11124#1 ------------------------------------------------------------ consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 GGCGTTCGACGCCGCCGCCGCCGCCGCCAGGCACGCCCCGGCGCGCAGCTTGTCGCCGCC 749 consensus_11124#1 ------------------------------------------------------------ consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 GCCCGCCGCGCAGAACCCACACCCCGCCGACGCCGCCGCTGCCTTGAGACACCTCGTGCA 809 consensus_11124#1 ------------------------------------------------------------ consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 GTCCCAGAACGACGACGACGAGCGGGAGGAGTAGTCCGGGCATGTGAGCGCGCCGCCGTG 869 consensus_11124#1 ------------------------------------------------------------ consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 GAAGTGGGCGGTCTCGGCGGCGCCGACGGGCGGGGAGTGGGAGGTGGCCTCGTGGAACAC 929 consensus_11124#1 ------------------------------------------------------------ consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 GGCGGAGAGGAGGGCGAGGGAGAGGATGACGCCGGCGAGGCTGATGACGAGCAGCTTGCG 989 consensus_11124#1 ------------------------------------------------------------ consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 CCGCCCGGTGCGGTCGATGAAGTAGATGCTGACGAGGGAGCCGGCGGCGTTGAGGCCGGC 1049 consensus_11124#1 ------------------------------------------------------------ consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 GGTGACGAGGGACAGCGCGAGCGCCGTCTGGTTGGAGGCGAACCCGGCGAGCTGCACGAT 1109 consensus_11124#1 ------------------------------------------------------------ consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 GGTGGGGCTGTAGTACATCACCGTGTTGATCCCCACCAGCTGCTGGAACACCTGCAGCCC 1169 consensus_11124#1 ------------------------------------------------------------ consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 GACGCCGGCGACCAGCCCCCGCCGCACCGTCGCCGTCGTCATCAGCAGCGCCACCAGGCT 1229 consensus_11124#1 ------------------------------------------------------------ consensus_11124#3 ------------------------------------------------------------ consensus_11124#2 ------------------------------------------------------------ consensus_11124#0 CGTCTTCTCCGACGAGCT 1247 consensus_11124#1 ------------------ consensus_11124#3 ------------------ consensus_11124#2 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||