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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11127#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1286 fasta sequence
[CATTCGAATCTCTCCGCCTCGTCGCCGTTGCGGCCGCTCCTCCCCTCCCCTCTCTCTCTTGTTCCCCCATGGCGATCGCCACCGAGTCGCGCTGCGAGGAGGAGAAGGCTTCGCCGCATTCGCAGGAGGTGAAGCGGTGGGTGTTGTCTGATTTTGACATCGGGAAGCCCCTCGGGAGGGGCAAGTTCGGCCATGTTTACTTAGCAAGAGAAAAGAGAAGTAACCATATTGTGGCTTTGAAAGTACTTTTCAAGAGCCAACTAAAGCAGTCCCAGGTGGAGCATCAGCTACGTCGGGAAGTTGAGATTCAGAGTCATCTTCGTCATCCCAACATTCTACGGCTGTATGGGTATTTCTATGATCAGACCCGTGTGTACTTGATCTTGGAGTATGCCTTAAAAGGTGAACTTTATAAGGAGTTGCAGAGGTGCAAGCATTTCTCTGAAAGACGTTCAGCGACTTACATTGCATCACTGGCGCATGCGCTCATCTACCTTCACGGAAAGCATGTGATCCATAGAGACATTAAACCTGAAAATCTTTTAATTGGGTCCCAGGGCGAACTGAAAATTGCAGACTTTGGTTGGTCTGTGCACACCTTCAACAGAAGAAGGACAATGTGTGGAACATTAGATTACCTGCCCCCTGAAATGGTGGAGAAGACTGAACATGACTACCATGTTGACATTTGGAGCTTGGGGATCCTGTGCTATGAGTTCCTTTATGGAGTCCCACCTTTCGAAGCAAAAGAACACTCCGAAACATATCGCAGGATTGTGAAAGTTGACTTGAAGTTCCCACTGAAACCATTCGTGTCCCCGGCTGCGAAAGACCTAATTTCACAGATGCTCGTGAAGAATTCGGCGCATCGTCTGCCCCTCCACAAGCTCCTCGAGCACCCTTGGATAGTTCAAAACGCTGATCCCTCCGGCGTGTACAGAGGCTAGAACAATCTCTTCCACTCTCCTCAATTCGAGGAGAGACCTGATTCTTTTTCATCACTGTTGTTATGGCAAAACAAGAAAAAAGCAGTAGCCGTACTACTCTACCTGTTGTTTCCGATCCCAGCTGCGCCTGTGTAGTTACGTGACAACGTGTATGCTCAAGCTTCAGATTTCCTCGATGAAGATTTGAAGCTGTGTGTGTGGGTTTAACGCGTATGTGTTTTAGCGTGTGTTCACAGCATGGGGTTGTGATATGTTTTCTGTGCAACGCCCTGTACTTAATGTACTAATCGTATTTCTTATTGGACATCACTCGATTAGTCTACAAGATAAAAAAAAAAA]
[+] EMBL AK102360 [CATTCGAATCTCTCCGCCTCGTCGCCGTTGCGGCCGCTCCTCCCCTCCCCTCTCTCTCTTGTTCCCCCATGGCGATCGCCACCGAGTCGCGCTGCGAGGAGGAGAAGGCTTCGCCGCATTCGCAGGAGGTGAAGCGGTGGGTGTTGTCTGATTTTGACATCGGGAAGCCCCTCGGGAGGGGCAAGTTCGGCCATGTTTACTTAGCAAGAGAAAAGAGAAGTAACCATATTGTGGCTTTGAAAGTACTTTTCAAGAGCCAACTAAAGCAGTCCCAGGTGGAGCATCAGCTACGTCGGGAAGTTGAGATTCAGAGTCATCTTCGTCATCCCAACATTCTACGGCTGTATGGGTATTTCTATGATCAGACCCGTGTGTACTTGATCTTGGAGTATGCCTTAAAAGGTGAACTTTATAAGGAGTTGCAGAGGTGCAAGCATTTCTCTGAAAGACGTTCAGCGACTTACATTGCATCACTGGCGCATGCGCTCATCTACCTTCACGGAAAGCATGTGATCCATAGAGACATTAAACCTGAAAATCTTTTAATTGGGTCCCAGGGCGAACTGAAAATTGCAGACTTTGGTTGGTCTGTGCACACCTTCAACAGAAGAAGGACAATGTGTGGAACATTAGATTACCTGCCCCCTGAAATGGTGGAGAAGACTGAACATGACTACCATGTTGACATTTGGAGCTTGGGGATCCTGTGCTATGAGTTCCTTTATGGAGTCCCACCTTTCGAAGCAAAAGAACACTCCGAAACATATCGCAGGATTGTGAAAGTTGACTTGAAGTTCCCACTGAAACCATTCGTGTCCCCGGCTGCGAAAGACCTAATTTCACAGATGCTCGTGAAGAATTCGGCGCATCGTCTGCCCCTCCACAAGCTCCTCGAGCACCCTTGGATAGTTCAAAACGCTGATCCCTCCGGCGTGTACAGAGGCTAGAACAATCTCTTCCACTCTCCTCAATTCGAGGAGAGACCTGATTCTTTTTCATCACTGTTGTTATGGCAAAACAAGAAAAAAGCAGTAGCCGTACTACTCTACCTGTTGTTTCCGATCCCAGCTGCGCCTGTGTAGTTACGTGACAACGTGTATGCTCAAGCTTCAGATTTCCTCGATGAAGATTTGAAGCTGTGTGTGTGGGTTTAACGCGTATGTGTTTTAGCGTGTGTTCACAGCATGGGGTTGTGATATGTTTTCTGTGCAACGCCCTGTACTTAATGTACTAATCGTATTTCTTATTGGACATCACT ]
[+] EMBL CF331152 [CATTCGAATCTCTCCGCCTCTTCGCCGTTGCGGCCGCTCCTCCCCTCCCCTCTCTCTCTTGTTCCCCCATGGCGATCGCCACCGAGTCGCGCTGCGAGGAGGAGAAGGCTTCGCCGCATTCGCAGGAGGTGAAGCGGTGGGTGTTGTCTGATTTTGACATCGGGAAGCCCCTCGGGAGGGGCAAGTTCGGCCATGTTTACTTAGCAAGAGAAAAGAGAAGTAACCATATTGTGGCTTTGAAAGTACTTTTCAAGAGCCAACTAAAGCAGTCCCAGGTGGAGCATCAGCTACGTCGGGAAGTTGAGATTCAGAGTCATCTTCGTCATCCCAACATTCTACGGCTGTATGGGTATTTCTATGATCAGACCCGTGTGTACTTGATCTTGGAGTATGCCTTAAAAGGTGAACTTTATAAGGAGTTGCAGAGGTGCAAGCATTTCTCTGAAAGACGTTCAGCGACTTACATTGCATCACTGGCGCATGCGCTCATCTACCTTCACGGAAAGCATGTGATCCATAGAGAC ]
[+] EMBL C22393 [ GCGGCCGCTCCTCCCCTCCCCTCTCTCTCTTGTTCCCCCATGGCGATCGCCACCGAGTCGCGCTGCGAGGAGGAGAAGGCTTCGCCGCATTCGCAGGAGGTGAAGCGGTGGGTGTTGTCTGATTTTGACATCGGGAAGCCCCTCGGGAGGGGCAAGTTCGGCCATGTTTACTTAGCAAGAGAAAAGAGAAGTAACCATATTGTGGCTTTGAAAGTACTTTTCAAGAGCCAACTAAAGCAGTCCCAGGTGGAGCATCAGCTACGTCGGGAAGTTGAGATTCAGAGTCATCTTCGTCATCCCAACATTCTACGGCTGTATGGGTATTTCTATGATCAGACCCGTGTGTACTTGATCTTGGAGTATGCCTTAAAAGGTGAACTTT ]
[+] EMBL AK061360 [ CCTCCCCTCCCCTCTCTCTCTTGTTCCCCCATGGCGATCGCCACCGAGTCGCGCTGCGAGGAGGAGAAGGCTTCGCCGCATTCGCAGGAGGTGAAGCGGTGGGTGTTGTCTGATTTTGACATCGGGAAGCCCCTCGGGAGGGGCAAGTTCGGCCATGTTTACTTAGCAAGAGAAAAGAGAAGTAACCATATTGTGGCTTTGAAAGTACTTTTCAAGAGCCAACTAAAGCAGTCCCAGGTGGAGCATCAGCTACGTCGGGAAGTTGAGATTCAGAGTCATCTTCGTCATCCCAACATTCTACGGCTGTATGGGTATTTCTATGATCAGACCCGTGTGTACTTGATCTTGGAGTATGCCTTAAAAGGTGAACTTTATAAGGAGTTGCAGAGGTGCAAGCATTTCTCTGAAAGACGTTCAGCGACTTACATTGCATCACTGGCGCATGCGCTCATCTACCTTCACGGAAAGCATGTGATCCATAGAGACATTAAACCTGAAAATCTTTTAATTGGGTCCCAGGGCGAACTGAAAATTGCAGACTTTGGTTGGTCTGTGCACACCTTCAACAGAAGAAGGACAATGTGTGGAACATTAGATTACCTGCCCCCTGAAATGGTGGAGAAGACTGAACATGACTACCATGTTGACATTTGGAGCTTGGGGATCCTGTGCTATGAGTTCCTTTATGGAGTCCCACCTTTCGAAGCAAAAGAACACTCCGAAACATATCGCAGGATTGTGAAAGTTGACTTGAAGTTCCCACTGAAACCATTCGTGTCCCCGGCTGCGAAAGACCTAATTTCACAGATGCTCGTGAAGAATTCGGCGCATCGTCTGCCCCTCCACAAGCTCCTCGAGCACCCTTGGATAGTTCAAAACGCTGATCCCTCCGGCGTGTACAGAGGCTAGAACAATCTCTTCCACTCTCCTCAATTCGAGGAGAGACCTGATTCTTTTTCATCACTGTTGTTATGGCAAAACAAGAAAAAAGCAGTAGCCGTACTACTCTACCTGTTGTTTCCGATCCCAGCTGCGCCTGTGTAGTTACGTGACAACGTGTATGCTCAAGCTTCAGATTTCCTCGATGAAGATTTGAAGCTGTGTGTGTGGGTTTAACGCGTATGTGTTTTAGCGTGTGTTCACAGCATGGGGTTGTGATATGTTTTCTGTGCAACGCCCTGTACTTAATGTACTAATCGTATTTCTTATTGGACATCACT ]
[+] EMBL AU031061 [ AGACTTTGGTTGGTCTGTGCACACCTTCAACAGAAGAAGGACAATGTGTGGAACATTAGNTTACCTGCCCCCTGAAATGGTGGAGAAGACTGAACATGACTACCATGTTGACATTTGGAGCTTGGGGATCCTGTGCTATGAGTTCCTTTATGGAGTCCCACCTTTCGAAGCAAAAGAACACNCCGAAACATATCGCAGGATTGTGAAAGTTGACTTGAAGTTCCCACTGAAACCATTCGTGTCCCCGGCTGCGAAAGACCTAATTTCACAGATGCTCGTGAAGAATTCGGCGCATCGTCTGCCCCTCCACAAGCTCCTCGAGCACCCTTGGATAGTTCAAAANGCTGATCCCTCCGGCGTGTACA ]
[+] EMBL C22394 [ GCTGCGAAAGNCCTAATTTCACAGATGCTCGTGAAGAATTCGGCGCATCGTCTGCCCCTCCACAAGCTCCTCGAGCACCCTTGGATAGTTCAAAACGCTGATCCCTCCGGCGTGTACAGAGGCTAGAACAATCTCTTCCACTCTCCTCAATTCGAGGAGAGACCTGATTCTTTTTCATCACTGTTGTTATGGCAAAACAAGAAAAAAGCAGTAGCCGTACTACTCTACCTGTTGTTTCCGATCCCAG TGCGCCTGTGTAGTTACGTGACAACGTGTATGCTCAAGCTTCAGATTTCCTCGATGAAGATTTGAAGCTGTGTGTGTGGGTTTAACGCGTATGTGTTTTAGCGTGTGTTCACAGCATGGGGTTGTGATATGTTTTCTGTGCAACGCCCTGTACTTAATGTACTAATCGTATTTCTTATTGGACATCACTCGATTAGTCTACAAGATAAAAAAAAAAA]
consensusID : consensus_11127#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence
[TCCCCTTTCCTCAATTGGAGGAGAGACCTGATTTTTTTTCATCCCTGTTGTTAGGGCAAAACAAAAAAAAAGCAGACGCCGGACTACTTTCCCTGTTGTTTCCGATCCCAGCGGGGCCTGGGTAGTTACGTGACAACGGGTATGCTCAAGCTTCAGATTTCCTCGATAAAAATTTAAAACTGGGGGTGGGGGTTTAACGGGTATGTGTTTTAGGGGGTGTTCCCAGCATGGGGTTGTGATATGTTTTTTGGGCAACCCCCTGTACTTAAGGGACTAATGGTATTTTTTATGTGGCCCCCCCTCGATTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF331151 [TCCCCTTTCCTCAATTGGAGGAGAGACCTGATTTTTTTTCATCCCTGTTGTTAGGGCAAAACAAAAAAAAAGCAGACGCCGGACTACTTTCCCTGTTGTTTCCGATCCCAGCGGGGCCTGGGTAGTTACGTGACAACGGGTATGCTCAAGCTTCAGATTTCCTCGATAAAAATTTAAAACTGGGGGTGGGGGTTTAACGGGTATGTGTTTTAGGGGGTGTTCCCAGCATGGGGTTGTGATATGTTTTTTGGGCAACCCCCTGTACTTAAGGGACTAATGGTATTTTTTATGTGGCCCCCCCTCGATTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11127#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence
[ACAATCTCTTCCACTCTCCTCAATTCGAGGAGAGACCTGATTCTTTTTCATCACTGTTGTTATGGCAAAACAAGAAAAAAGCAGTAGCCGTACTACTCTACCTGTTGTTTCCGATCCCAGTGCGCCTGTGTAGTTACGTGACAACGTGTATGCTCAAGCTTCAGATTTCCTCGATGAAGATTTGAAGCTGTGTGTGTGGGTTTAACGCGTATGTGTTTTAGCGTGTGTTCACAGCATGGGGTTGTGATATGTTTTCTGTGCAACGCCCTGTACTTAATGTACTAATCGTATTTCTTATTGGANATCACTCGATTAAAAAAAAAAAA]
[+] EMBL AU075433 [ACAATCTCTTCCACTCTCCTCAATTCGAGGAGAGACCTGATTCTTTTTCATCACTGTTGTTATGGCAAAACAAGAAAAAAGCAGTAGCCGTACTACTCTACCTGTTGTTTCCGATCCCAGTGCGCCTGTGTAGTTACGTGACAACGTGTATGCTCAAGCTTCAGATTTCCTCGATGAAGATTTGAAGCTGTGTGTGTGGGTTTAACGCGTATGTGTTTTAGCGTGTGTTCACAGCATGGGGTTGTGATATGTTTTCTGTGCAACGCCCTGTACTTAATGTACTAATCGTATTTCTTATTGGANATCACTCGATTAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11127#0 CATTCGAATCTCTCCGCCTCGTCGCCGTTGCGGCCGCTCCTCCCCTCCCCTCTCTCTCTT 60
consensus_11127#2 ------------------------------------------------------------
consensus_11127#1 ------------------------------------------------------------
consensus_11127#0 GTTCCCCCATGGCGATCGCCACCGAGTCGCGCTGCGAGGAGGAGAAGGCTTCGCCGCATT 120
consensus_11127#2 ------------------------------------------------------------
consensus_11127#1 ------------------------------------------------------------
consensus_11127#0 CGCAGGAGGTGAAGCGGTGGGTGTTGTCTGATTTTGACATCGGGAAGCCCCTCGGGAGGG 180
consensus_11127#2 ------------------------------------------------------------
consensus_11127#1 ------------------------------------------------------------
consensus_11127#0 GCAAGTTCGGCCATGTTTACTTAGCAAGAGAAAAGAGAAGTAACCATATTGTGGCTTTGA 240
consensus_11127#2 ------------------------------------------------------------
consensus_11127#1 ------------------------------------------------------------
consensus_11127#0 AAGTACTTTTCAAGAGCCAACTAAAGCAGTCCCAGGTGGAGCATCAGCTACGTCGGGAAG 300
consensus_11127#2 ------------------------------------------------------------
consensus_11127#1 ------------------------------------------------------------
consensus_11127#0 TTGAGATTCAGAGTCATCTTCGTCATCCCAACATTCTACGGCTGTATGGGTATTTCTATG 360
consensus_11127#2 ------------------------------------------------------------
consensus_11127#1 ------------------------------------------------------------
consensus_11127#0 ATCAGACCCGTGTGTACTTGATCTTGGAGTATGCCTTAAAAGGTGAACTTTATAAGGAGT 420
consensus_11127#2 ------------------------------------------------------------
consensus_11127#1 ------------------------------------------------------------
consensus_11127#0 TGCAGAGGTGCAAGCATTTCTCTGAAAGACGTTCAGCGACTTACATTGCATCACTGGCGC 480
consensus_11127#2 ------------------------------------------------------------
consensus_11127#1 ------------------------------------------------------------
consensus_11127#0 ATGCGCTCATCTACCTTCACGGAAAGCATGTGATCCATAGAGACATTAAACCTGAAAATC 540
consensus_11127#2 ------------------------------------------------------------
consensus_11127#1 ------------------------------------------------------------
consensus_11127#0 TTTTAATTGGGTCCCAGGGCGAACTGAAAATTGCAGACTTTGGTTGGTCTGTGCACACCT 600
consensus_11127#2 ------------------------------------------------------------
consensus_11127#1 ------------------------------------------------------------
consensus_11127#0 TCAACAGAAGAAGGACAATGTGTGGAACATTAGATTACCTGCCCCCTGAAATGGTGGAGA 660
consensus_11127#2 ------------------------------------------------------------
consensus_11127#1 ------------------------------------------------------------
consensus_11127#0 AGACTGAACATGACTACCATGTTGACATTTGGAGCTTGGGGATCCTGTGCTATGAGTTCC 720
consensus_11127#2 ------------------------------------------------------------
consensus_11127#1 ------------------------------------------------------------
consensus_11127#0 TTTATGGAGTCCCACCTTTCGAAGCAAAAGAACACTCCGAAACATATCGCAGGATTGTGA 780
consensus_11127#2 ------------------------------------------------------------
consensus_11127#1 ------------------------------------------------------------
consensus_11127#0 AAGTTGACTTGAAGTTCCCACTGAAACCATTCGTGTCCCCGGCTGCGAAAGACCTAATTT 840
consensus_11127#2 ------------------------------------------------------------
consensus_11127#1 ------------------------------------------------------------
consensus_11127#0 CACAGATGCTCGTGAAGAATTCGGCGCATCGTCTGCCCCTCCACAAGCTCCTCGAGCACC 900
consensus_11127#2 ------------------------------------------------------------
consensus_11127#1 ------------------------------------------------------------
consensus_11127#0 CTTGGATAGTTCAAAACGCTGATCCCTCCGGCGTGTACAGAGGCTAGAACAATCTCTTCC 960
consensus_11127#2 ------------------------------------------------ACAATCTCTTCC 12
consensus_11127#1 ---------------------------------------------------------TCC 3
***
consensus_11127#0 ACTCTCCTCAATTCGAGGAGAGACCTGATTCTTTTTCATCACTGTTGTTATGGCAAAACA 1020
consensus_11127#2 ACTCTCCTCAATTCGAGGAGAGACCTGATTCTTTTTCATCACTGTTGTTATGGCAAAACA 72
consensus_11127#1 CCTTTCCTCAATTGGAGGAGAGACCTGATTTTTTTTCATCCCTGTTGTTAGGGCAAAACA 63
** ********* **************** ********* ********* *********
consensus_11127#0 AGAAAAAAGCAGTAGCCGTACTACTCTACCTGTTGTTTCCGATCCCAGCTGCGCCTGTGT 1080
consensus_11127#2 AGAAAAAAGCAGTAGCCGTACTACTCTACCTGTTGTTTCCGATCCCAG-TGCGCCTGTGT 131
consensus_11127#1 AAAAAAAAGCAGACGCCGGACTACTTTCCCTGTTGTTTCCGATCCCAGCGGGGCCTGGGT 123
* ********** **** ****** * ******************** * ***** **
consensus_11127#0 AGTTACGTGACAACGTGTATGCTCAAGCTTCAGATTTCCTCGATGAAGATTTGAAGCTGT 1140
consensus_11127#2 AGTTACGTGACAACGTGTATGCTCAAGCTTCAGATTTCCTCGATGAAGATTTGAAGCTGT 191
consensus_11127#1 AGTTACGTGACAACGGGTATGCTCAAGCTTCAGATTTCCTCGATAAAAATTTAAAACTGG 183
*************** **************************** ** **** ** ***
consensus_11127#0 GTGTGTGGGTTTAACGCGTATGTGTTTTAGCGTGTGTTCACAGCATGGGGTTGTGATATG 1200
consensus_11127#2 GTGTGTGGGTTTAACGCGTATGTGTTTTAGCGTGTGTTCACAGCATGGGGTTGTGATATG 251
consensus_11127#1 GGGTGGGGGTTTAACGGGTATGTGTTTTAGGGGGTGTTCCCAGCATGGGGTTGTGATATG 243
* *** ********** ************* * ****** ********************
consensus_11127#0 TTTTCTGTGCAACGCCCTGTACTTAATGTACTAATCGTATTTCTTAT-TGGACATCACTC 1259
consensus_11127#2 TTTTCTGTGCAACGCCCTGTACTTAATGTACTAATCGTATTTCTTAT-TGGANATCACTC 310
consensus_11127#1 TTTTTTGGGCAACCCCCTGTACTTAAGGGACTAATGGTATTTTTTATGTGGCCCCCCCTC 303
**** ** ***** ************ * ****** ****** **** *** * ***
consensus_11127#0 GATTAGTCTACAAGATAAAAAAAAAAA--------------------------- 1286
consensus_11127#2 GATTA------AAAAAAAAAAA-------------------------------- 326
consensus_11127#1 GATTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 357
**** ** * ******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||