|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11135#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2254 fasta sequence
[ACCTTCCGACGGCGACCGGGCCGCCATATCCCTCCTACCGTTTGTTCCTCCTCCTCCTCTTCTTCTCCCCCCCTATCTCTCTCTCTCTCTCCCCTCCCTCCCCTCCTCGCTCACCAACTCCTCCTGTCCCGACTCGCGAGCGAATCCGCCGAGCAGCCCAAGAACAAGGGGGAAGGAGGAGGAGGAGGAGGAGGAGGGATGGGGGGGATTGCCTCGTGAAGTGATCCGACATACATATCCCTCCCAGCTTGGGGTTCGAATCCCAATCCCGAGCGGAAAAAAAAGTCTGAAAGTTAACGCGTCCTTCGGCCGCGGATTCAGAATTCTGCGAATATAAGTACATTACGGTGGGCCGTGATACCAATTTGTACCGAGCAATTAATTGAAGGTTAGAGTTTGAGCTTATAGGAGATGAAGTGATTGGAGCTGAATCCTGTTGCTGAAAGCAGCGATTTCGTGTCAAAATTTGATGCCTTTGCTTGGTTCGAGAGCTGTACATGCTTGATACTGTTGCGATCCTGCAATGTCCCGAAGGAATGCCGGGGCAATGCAGCGGGAGGGGTCAGTCAAGGACTGGGAGGAATTTGACCCCTCGCCGTCTCCCAAGCTGGCGTACTCGCAGTCCTATGTTGCAATGAGGGGGCTTCTGACATCGGTGGCCTCGCTGGACCTTGTCCTGATGTCGAGCAGCCTCAAGTCTGCTTGGGCAGCTATATCATCCCACAAGCATGCCCGGTCCTTGGAGAGGTCAAGGTCCAAGGGAATGAGCTTGAAGAGGGCCATGCTGCAGTTATTAGTGTGCTTCATGGTTGGTATCTTCATTGGGTTCACGCCACCCTTTTCCGTGGATCTACCAGGAAAGATAGCTTCTGAAAATGGGAGGCTTCCATTTGATGGGGATGCCATTGACAGAAGACAAATGGTAGAGCGTCAAGGCACCAAGTTGGAGCCATTCGTAGCCGAGGCTGAATCTGAAGCAAGCAGCGAGCCACAGGTTGAAGAGGGCCCACCAGTTCCTGCAATGTTGGATGACGAGGCGGACTTTGTTGAAGCCTCGCCTATCGTACATTCTGTTAATGATTCTGGCATTGTTGTGAGGAAGCACCTGATAATTATTACAACAACCTCTGTTCGACCACACCAGGCATATTACTTAAATCGTTTGGCTCATGTATTAAAAGATGTCCCGCCTCCTCTTCTGTGGATAGTGGCAGAGTGGCCATATCAGTCCCGCGAAACTGCAGAAATACTGAGGTCTTCTGGGATCATGTACAGACATCTTATCTGCAATCGGAATACTACAAATATAAGGAAGATTGTTGTCTGCCAAAAGAATAATGCAATTTTTCACATTAAGAAGCACCGTCTAGATGGTATAGTGCATTTCGCTGATGAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAA-GGCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGTGGTTCTAGAAGGCCCCGTTTGTAAGGGTAATCAAGTCACTGGATGGCATACAAATCAGAGAAGGGGTGTATCACGTCGATTTCCAATTGGTTTCTCTGGATTTGCTTTTAACAGCACTATACTTTGGGATCCTCAGAGATGGAACAGCCCCACTTTAGAGTCTATTATAGTCCATTCAGGTGGCAGAGGTGGCTTGCAGGAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGGCCTTGGGGATAATTGCACTCGTGTTATGGTCTGGAATTTCGAACTGGAACCTCCTCAAGTCAACTACCCAATTGGCTGGCTGCTGCAGAGGAATCTGGATGCTGTTATGCCAATAACATAACTGTCCTGCTGCTGCTCTTTTTGTTTGCCATCCTAGTGTGAATGATGCCTTCCTGAACTTGGTAGCGTCCAGGATCATGAGAAGCTGCTCTGCCAAGATCTGGTCCAAATAATGTCATACTAGTAACAGTTGAAAAGTGAGAAGCCTGACAAAAGAAAGTTTTTCTCTCTGTTGCATTCTTTTCTATATGTTCATTTTTTCCCCATATTCATCCAGCTAGATATAGCCATGTACATTTCATTTTTTTTCTCGTTTCTGTCCGTTATATACATACATATCACCTCACAGATGTGAATGTTCCCCTCCATTGGAACTGTTGAAGAGCAAAGCAGATACTCTCTTTGATATACATGAACAAAGGTTAAATCAAAACCATAGATTGTACAAAAA]
[+] EMBL AK069674 [ACCTTCCGACGGCGACCGGGCCGCCATATCCCTCCTACCGTTTGTTCCTCCTCCTCCTCTTCTTCTCCCCCCCTATCTCTCTCTCTCTCTCCCCTCCCTCCCCTCCTCGCTCACCAACTCCTCCTGTCCCGACTCGCGAGCGAATCCGCCGAGCAGCCCAAGAACAAGGGGGAAGGAGGAGGAGGAGGAGGAGGAGGGATGGGGGGGATTGCCTCGTGAAGTGATCCGACATACATATCCCTCCCAGCTTGGGGTTCGAATCCCAATCCCGAGCGGAAAAAAAAGTCTGAAAGTTAACGCGTCCTTCGGCCGCGGATTCAGAATTCTGCGAATATAAGTACATTACGGTGGGCCGTGATACCAATTTGTACCGAGCAATTAATTGAAGGTTAGAGTTTGAGCTTATAGGAGATGAAGTGATTGGAGCTGAATCCTGTTGCTGAAAGCAGCGATTTCGTGTCAAAATTTGATGCCTTTGCTTGGTTCGAGAGCTGTACATGCTTGATACTGTTGCGATCCTGCAATGTCCCGAAGGAATGCCGGGGCAATGCAGCGGGAGGGGTCAGTCAAGGACTGGGAGGAATTTGACCCCTCGCCGTCTCCCAAGCTGGCGTACTCGCAGTCCTATGTTGCAATGAGGGGGCTTCTGACATCGGTGGCCTCGCTGGACCTTGTCCTGATGTCGAGCAGCCTCAAGTCTGCTTGGGCAGCTATATCATCCCACAAGCATGCCCGGTCCTTGGAGAGGTCAAGGTCCAAGGGAATGAGCTTGAAGAGGGCCATGCTGCAGTTATTAGTGTGCTTCATGGTTGGTATCTTCATTGGGTTCACGCCACCCTTTTCCGTGGATCTACCAGGAAAGATAGCTTCTGAAAATGGGAGGCTTCCATTTGATGGGGATGCCATTGACAGAAGACAAATGGTAGAGCGTCAAGGCACCAAGTTGGAGCCATTCGTAGCCGAGGCTGAATCTGAAGCAAGCAGCGAGCCACAGGTTGAAGAGGGCCCACCAGTTCCTGCAATGTTGGATGACGAGGCGGACTTTGTTGAAGCCTCGCCTATCGTACATTCTGTTAATGATTCTGGCATTGTTGTGAGGAAGCACCTGATAATTATTACAACAACCTCTGTTCGACCACACCAGGCATATTACTTAAATCGTTTGGCTCATGTATTAAAAGATGTCCCGCCTCCTCTTCTGTGGATAGTGGCAGAGTGGCCATATCAGTCCCGCGAAACTGCAGAAATACTGAGGTCTTCTGGGATCATGTACAGACATCTTATCTGCAATCGGAATACTACAAATATAAGGAAGATTGTTGTCTGCCAAAAGAATAATGCAATTTTTCACATTAAGAAGCACCGTCTAGATGGTATAGTGCATTTCGCTGATGAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAA GGCGTTTTGGTAAATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGTGGTTCTAGAAGGCCCCGTTTGTAAGGGTAATCAAGTCACTGGATGGCATACAAATCAGAGAAGGGGTGTATCACGTCGATTTCCAATTGGTTTCTCTGGATTTGCTTTTAACAGCACTATACTTTGGGATCCTCAGAGATGGAACAGCCCCACTTTAGAGTCTATTATAGTCCATTCAGGTGGCAGAGGTGGCTTGCAGGAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGGCCTTGGGGATAATTGCACTCGTGTTATGGTCTGGAATTTCGAACTGGAACCTCCTCAAGTCAACTACCCAATTGGCTGGCTGCTGCAGAGGAATCTGGATGCTGTTGTGCCAATAACATAACTGTCCTGCTGCTCCTCTTTTTGTTTGCCATCCTAGTGTGAATGATGCCTTCCTGAACTTGGTAGCGTCCAGGATCATGAGAAGCTGCTCTGCCAAGATCTGGTCCAAATAATGTCATACTAGTAACAGTTGAAAAGTGAGAAGCCTGACAAAAGAAAGTTTTTCTCTCTGTTGCATTCTTTTCTATATGTTCATTTTTTCCCCATATTCATCCAGCTAGATATAGCCATGTACATTTCATTTTTTTTCTCGTTTCTGTCCGTTATATACATACATATCACCTCACAGATGTGAATGTTCCCCTCCATTGGAACTGTTGAAGAGCAAAGCAGATACTCTCTTTGATATACATGAACAA ]
[+] EMBL CB619643 [ GTTATCCTTGAGCTTCATGGTTGGTATCTTCATTGGGTTCACGCCACCCTTTTCCGTGGATCTACCAGGAAAGATAGCTTCTGAAAATGGGAGGCTTCCATTTGATGGGGATGCCATTGACAGAAGACAAATGGTAGAGCGTCAAGGCACCAAGTTGGAGCCATTCGTAGCCGAGGCTGAATCTGAAGCAAGCAGCGAGCCACAGGTTGAAGAGGGCCCACCAGTTCCTGCAATGTTGGATGACGAGGCGGACTTTGTTGAAGCCTCGCCTATCGTACATTCTGTTAATGATTCTGGTATTGTTGTGAGGAAGCACCTGATAATTATTACAACAACCTCTGTTCGACCACACCAGGCATATTACTTAAATCGTTTGGCTCATGTGTTAAAAGATGTCCCGCCTCCTCTTCTGTGGATAGTGGCAGAGTGGCCATATCAGTCCCGCGAAACTGCAGAAATACTGAGGTCTTCTGGGATCATGTACAGACATCTTATCTGCAATCGGAATACTACAAATATAAGGAAGATTGTTGTCTGCCAAAAGAATAATGCAATTTTTCACATTAAGAAGCACCGTCTAGATGGTATAGTGCATTTCGCTGATGAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAA GGCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGTGGTTCTAGAAGGCCCCGTTTGTAAGGGTAATCAAGTCACTGGATGGCATACAAATCAGAGAAGGGGTGTATCACGTCGATTTCCAATTGGTTTCTCTGG ]
[+] EMBL CF305013 [ TCTGAAGCAAGCAGCGAGCCACAGGTTGAAGAGGGCCCACCAGTTCCTGCAATGTTGGATGACGAGGCGGACTTTGTTGAAGCCTCGCCTATCGTACATTCTGTTAATGATTCTGGCATTGTTGTGAGGAAGCACCTGATAATTATTACAACAACCTCTGTTCGACCACACCAGGCATATTACTTAAATCGTTTGGCTCATGTATTAAAAGATGTCCCGCCTCCTCTTCTGTGGATAGTGGCAGAGTGGCCATATCAGTCCCGCGAAACTGCAGAAATACTGAGGTCTTCTGGGATCATGTACAGACATCTTATCTGCAATCGGAATACTACAAATATAAGGAAGATTGTTGTCTGCCAAAAGAATAATGCAATTTTTCACATTAAGAAGCACCGTCTAGATGGTATAGTGCATTTCGCTGATGAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAGGGCGTTTTGGTACATGGCCAGTAGCAATAC ]
[+] EMBL CA766167 [ ATCGAGAAGCTTGTTGAGGACGAGAGT NAATGGAAGGCCTTGGGGATAATTGCACTCGTGTTATGGTCTGGAATTTCGAACTGGAACCTCCTCAAGTCAACTACCCAATTGGCTGGCTGCTGCAGAGGAATCTGGATGCTGTTATGCCAATAACATAACTGTCCTGCTGCTGCTCTTTTTGTTTGCCATCCTAGTGTGAATGATGCCTTCCTGAACTTGGTAGCGTCCAGGATCATGAGAAGCTGCTCTGCCAAGATCTGGTCCAAATAATGTCATACTAGTAACAGTTGAAAAGTGAGAAGCCTGACAAGAGAAAGTTTTTCTCTCTGTTGCATTCTTTTCTATATGTTCATTTTTTCCCCATATTCATCCAGCTAGATATAGCCATGTACATTTCATTTTTTTTCTCGTTTCTGTCCGTTATATACATACATATCACCTCACAGATGTGAATGTTCCCCTCCATTGGAACTGTTGAAGAGCAAAGCAGATACTCTCTTTGATATACATGAACAAAGGTTAAATCAAAACCATAGATTGTA ]
[+] EMBL BM421036 [ TCTGGAATTTCGAACTGGAACCTCCTCAAGTCAACTACCC ATTGGCTGGCTGCTGCAGAGGAATCTGGATGCTGTTATGCCAATAACATAACTGTCCTGCTGCTGCTCTTTTTGTTTGCCATCCTAGTGTGAATGATGCCTTCCTGAACTTGGTAGCGTCCAGGATCATGAGAAGCTGCTCTGCCAAGATCTGGTCCAAATAATGTCATACTAGTAACAGTTGAAAAGTGAGAAGCCTGACAAAAGAAAGTTTTTCTCTCTGTTGCATTCTTTTCTATATGTTCATTTTTTCCCCATATTCATCCAGCTAGATATAGCCATGTACATTTCATTTTTTTTCTCGTTTCTGTCCGTTATATACATACATATCACCTCACAGATGTGAATGTTCCCCTCCATTGGAACTGTTGAAGA CCAACCAGATACTCTCTTTGATATACATGAAC AAGGTTAAATC AAACCATAGATTGTACAAAAA]
consensusID : consensus_11135#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1417 fasta sequence
[CAGGTTGAAGAGGGCCCACCAGTTCCTGCAATGTTGGATGACGAGGCGGACTTTGTTGAAGCCTCGCCTATCGTACATTCTGTTAATGATTCTGGCATTGTTGTGAGGAAGCACCTGATAATTATTACAACAACCTCTGTTCGACCACACCAGGCATATTACTTAAATCGTTTGGCTCATGTATTAAAAGATGTCCCGCCTCCTCTTCTGTGGATAGTGGCAGAGTGGCCATATCAGTCCCGCGAAACTGCAGAAATACTGAGGTCTTCTGGGATCATGTACAGACATCTTATCTGCAATCGGAATACTACAAATATAAGGAAGATTGTTGTCTGCCAAAAGAATAATGCAATTTTTCACATTAAGAAGCACCGTCTAGATGGTATAGTGCATTTCGCTGATGAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAGGCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGTGGTTCTAGAAGGCCCCGTTTGTAAGGGTAATCAAGTCACTGGATGGCATACAAATCAGAGAAGGGGTGTATCACGTCGATTTCCAATTGGTTTCTCTGGATTTGCTTTTAACAGCACTATACTTTGGGATCCTCAGAGATGGAACAGCCCCACTTTAGAGTCTATTATAGTCCATTCAGGTGGCAGAGGTGGCTTGCAGTTAAACACGCCCTTTCAAGATCTGGTAAGCTCGGTTAACTTATTACACAATTATTGAGGTGAGGCAAATGCAACCACTGTGGTACCAGTTAGATCAAGTACATAAGACAAAGTGCTGTGAAGAACTAGTAACACATGGCAATTCCTTGAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGGCCTTGGGGATAATTGCACTCGTGTTATGGTCTGGAATTTCGAACTGGAACCTCCTCAAGTCAACTACCCAATTGGCTGGCTGCTGCAGAGGAATCTGGATGCTGTTGTGCCAATAACATAACTGTCCTGCTGCTCCTCTTTTTGTTTGCCATCCTAGTGTGAATGATGCCTTCCTGAACTTGGTAGCGTCCAGGATCATGAGAAGCTGCTCTGCCAAGATCTGGTCCAAATAATGTCATACTAGTAACAGTTGAAAAGTGAGAAGCCTGACAAAAGAAAGTTTTTCTCTCTGTTGCATTCTTTTCTATATGTTCATTTTTTCCCCATATTCATCCAGCTAGATATAGCCATGTACATTTCATTTTTTTTCTCGTTTCTGTCCGTTATATACATACATATCACCTCACAGATGTGAATGTTCCCCTCCATTGGAACTGTTGAAGAGCAAAGCAGATACTCTCTTTGATATACATGAACAAAGGTTAAATCAAAACCATAGATTGTACACACAATGGTGT]
[+] EMBL AK062112 [CAGGTTGAAGAGGGCCCACCAGTTCCTGCAATGTTGGATGACGAGGCGGACTTTGTTGAAGCCTCGCCTATCGTACATTCTGTTAATGATTCTGGCATTGTTGTGAGGAAGCACCTGATAATTATTACAACAACCTCTGTTCGACCACACCAGGCATATTACTTAAATCGTTTGGCTCATGTATTAAAAGATGTCCCGCCTCCTCTTCTGTGGATAGTGGCAGAGTGGCCATATCAGTCCCGCGAAACTGCAGAAATACTGAGGTCTTCTGGGATCATGTACAGACATCTTATCTGCAATCGGAATACTACAAATATAAGGAAGATTGTTGTCTGCCAAAAGAATAATGCAATTTTTCACATTAAGAAGCACCGTCTAGATGGTATAGTGCATTTCGCTGATGAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAGGCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGTGGTTCTAGAAGGCCCCGTTTGTAAGGGTAATCAAGTCACTGGATGGCATACAAATCAGAGAAGGGGTGTATCACGTCGATTTCCAATTGGTTTCTCTGGATTTGCTTTTAACAGCACTATACTTTGGGATCCTCAGAGATGGAACAGCCCCACTTTAGAGTCTATTATAGTCCATTCAGGTGGCAGAGGTGGCTTGCAGTTAAACACGCCCTTTCAAGATCTGGTAAGCTCGGTTAACTTATTACACAATTATTGAGGTGAGGCAAATGCAACCACTGTGGTACCAGTTAGATCAAGTACATAAGACAAAGTGCTGTGAAGAACTAGTAACACATGGCAATTCCTTGAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGGCCTTGGGGATAATTGCACTCGTGTTATGGTCTGGAATTTCGAACTGGAACCTCCTCAAGTCAACTACCCAATTGGCTGGCTGCTGCAGAGGAATCTGGATGCTGTTGTGCCAATAACATAACTGTCCTGCTGCTCCTCTTTTTGTTTGCCATCCTAGTGTGAATGATGCCTTCCTGAACTTGGTAGCGTCCAGGATCATGAGAAGCTGCTCTGCCAAGATCTGGTCCAAATAATGTCATACTAGTAACAGTTGAAAAGTGAGAAGCCTGACAAAAGAAAGTTTTTCTCTCTGTTGCATTCTTTTCTATATGTTCATTTTTTCCCCATATTCATCCAGCTAGATATAGCCATGTACATTTCATTTTTTTTCTCGTTTCTGTCCGTTATATACATACATATCACCTCACAGATGTGAATGTTCCCCTCCATTGGAACTGTTGAAGAGCAAAGCAGATACTCTCTTTGATATACATGAACAAAGGTTAAATCAAAACCATAGATTGTACACACAATGGTGT]
[+] EMBL BE229701 [ CGAG GTCGNATGGAAGG CTTGGGGATAATTGCACTCGTGTGATGGTCTGGAATTTCGAACTGGAA CTCCTCAAGTCAACTACCCAATTGGCTGGCTGCTGCAGAGGAATCTGGATGCTGTTGTGCCAATAACATAACTGTCCTGCTGCTCCTCTTTTTGTTTGCCATCCTAGTGTGAATGATGCCTTCCTGAACTTGGTAGCGTCCAGGATC TGAGAANCTGCTCTGCCAAGATCTGGTCCAAATAATGTCATACTAGTAACAGTTGAAAAGTGAGAAGCCTGACAAAAGAAAGTTTTTCTCTCTGTTGCATTCTTTTCTATATGTTCATTTTTTCCCCATATTCATCCAGCTAGATATAGCCATGTACATTTCATTTTTTTTCTCGTTTCTGTCCGTTATATACATACATATCACCTCACAGATGTGAATGTTCCCCTCCNTTGGAACTGTTGAAGANCAAANCANATACTCTCTTTGATATACATGAACAA ]
consensusID : consensus_11135#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence
[TAAGCTCGGTTAACTTATTACACAATTATGNAGGTGAGGCAAATGCAACCATTGTGGTACCAGTTAGATCAAGTACATAAGACAAGGTGCTGTGAAGAACTAGTAACACATGGCAATTCCTTGTAAGTTTAGATACAACCATGAAATGGAAGCTAATATATAGTAGATAGGAAGTATCTCTTACTAGAAGCAACTCAAGAAGGTAGCAATCATACTGAAACATCTTGGCATTACAGGAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGGCCTTGGGGATAATTGCACTCGTGTTATGGTCTGGAATTTCGAACTGGAACCTCCTCAAGTCAACTACCCAATTGGCTGGCTGCTGCAGAGGAATCTGGATGCTGTTATGCCAATAACATAACTGTCCTGCTGCTGCTCTTTTTGTTTGCCATCCTAGTGTGAATGATGCCTTCCTGAACTTGGTAGCGTCCAGGATCATGAGAAGCTGCTCTGCCAAGATCTGGTCCAAATAATGTCATACTAGTAACAGTTGAAAAGTGAGAAGCCTGACAAAAGAAAGTTTTTCTCTCTGTTGCATTCTTTTCTATATGTTCATTTTTTCCCCATATTCATCCAGCTAGATATAGCCATGTACATTTCATTTTTTTTCTCGTTTCTGTCCGTTATATACATACATATCACCTCACAGATGTGAATGTTCCCCTCCATTGGAACTGTTGAAGAGCAAAGCAGATACTCTGTTTGATATACATGAACAAAGGTTAAATCAAAA]
[-] EMBL CB619644 [TAAGCTCGGTTAACTTATTACACAATTATGNAGGTGAGGCAAATGCAACCATTGTGGTACCAGTTAGATCAAGTACATAAGACAAGGTGCTGTGAAGAACTAGTAACACATGGCAATTCCTTGTAAGTTTAGATACAACCATGAAATGGAAGCTAATATATAGTAGATAGGAAGTATCTCTTACTAGAAGCAACTCAAGAAGGTAGCAATCATACTGAAACATCTTGGCATTACAGGAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGGCCTTGGGGATAATTGCACTCGTGTTATGGTCTGGAATTTCGAACTGGAACCTCCTCAAGTCAACTACCCAATTGGCTGGCTGCTGCAGAGGAATCTGGATGCTGTTATGCCAATAACATAACTGTCCTGCTGCTGCTCTTTTTGTTTGCCATCCTAGTGTGAATGATGCCTTCCTGAACTTGGTAGCGTCCAGGATCATGAGAAGCTGCTCTGCCAAGATCTGGTCCAAATAATGTCATACTAGTAACAGTTGAAAAGTGAGAAGCCTGACAAAAGAAAGTTTTTCTCTCTGTTGCATTCTTTTCTATATGTTCATTTTTTCCCCATATTCATCCAGCTAGATATAGCCATGTACATTTCATTTTTTTTCTCGTTTCTGTCCGTTATATACATACATATCACCTCACAGATGTGAATGTTCCCCTCCATTGGAACTGTTGAAGAGCAAAGCAGATACTCTGTTTGATATACATGAACAAAGGTTAAATCAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11135#0 ACCTTCCGACGGCGACCGGGCCGCCATATCCCTCCTACCGTTTGTTCCTCCTCCTCCTCT 60
consensus_11135#1 ------------------------------------------------------------
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 TCTTCTCCCCCCCTATCTCTCTCTCTCTCTCCCCTCCCTCCCCTCCTCGCTCACCAACTC 120
consensus_11135#1 ------------------------------------------------------------
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 CTCCTGTCCCGACTCGCGAGCGAATCCGCCGAGCAGCCCAAGAACAAGGGGGAAGGAGGA 180
consensus_11135#1 ------------------------------------------------------------
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 GGAGGAGGAGGAGGAGGGATGGGGGGGATTGCCTCGTGAAGTGATCCGACATACATATCC 240
consensus_11135#1 ------------------------------------------------------------
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 CTCCCAGCTTGGGGTTCGAATCCCAATCCCGAGCGGAAAAAAAAGTCTGAAAGTTAACGC 300
consensus_11135#1 ------------------------------------------------------------
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 GTCCTTCGGCCGCGGATTCAGAATTCTGCGAATATAAGTACATTACGGTGGGCCGTGATA 360
consensus_11135#1 ------------------------------------------------------------
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 CCAATTTGTACCGAGCAATTAATTGAAGGTTAGAGTTTGAGCTTATAGGAGATGAAGTGA 420
consensus_11135#1 ------------------------------------------------------------
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 TTGGAGCTGAATCCTGTTGCTGAAAGCAGCGATTTCGTGTCAAAATTTGATGCCTTTGCT 480
consensus_11135#1 ------------------------------------------------------------
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 TGGTTCGAGAGCTGTACATGCTTGATACTGTTGCGATCCTGCAATGTCCCGAAGGAATGC 540
consensus_11135#1 ------------------------------------------------------------
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 CGGGGCAATGCAGCGGGAGGGGTCAGTCAAGGACTGGGAGGAATTTGACCCCTCGCCGTC 600
consensus_11135#1 ------------------------------------------------------------
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 TCCCAAGCTGGCGTACTCGCAGTCCTATGTTGCAATGAGGGGGCTTCTGACATCGGTGGC 660
consensus_11135#1 ------------------------------------------------------------
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 CTCGCTGGACCTTGTCCTGATGTCGAGCAGCCTCAAGTCTGCTTGGGCAGCTATATCATC 720
consensus_11135#1 ------------------------------------------------------------
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 CCACAAGCATGCCCGGTCCTTGGAGAGGTCAAGGTCCAAGGGAATGAGCTTGAAGAGGGC 780
consensus_11135#1 ------------------------------------------------------------
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 CATGCTGCAGTTATTAGTGTGCTTCATGGTTGGTATCTTCATTGGGTTCACGCCACCCTT 840
consensus_11135#1 ------------------------------------------------------------
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 TTCCGTGGATCTACCAGGAAAGATAGCTTCTGAAAATGGGAGGCTTCCATTTGATGGGGA 900
consensus_11135#1 ------------------------------------------------------------
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 TGCCATTGACAGAAGACAAATGGTAGAGCGTCAAGGCACCAAGTTGGAGCCATTCGTAGC 960
consensus_11135#1 ------------------------------------------------------------
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 CGAGGCTGAATCTGAAGCAAGCAGCGAGCCACAGGTTGAAGAGGGCCCACCAGTTCCTGC 1020
consensus_11135#1 -------------------------------CAGGTTGAAGAGGGCCCACCAGTTCCTGC 29
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 AATGTTGGATGACGAGGCGGACTTTGTTGAAGCCTCGCCTATCGTACATTCTGTTAATGA 1080
consensus_11135#1 AATGTTGGATGACGAGGCGGACTTTGTTGAAGCCTCGCCTATCGTACATTCTGTTAATGA 89
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 TTCTGGCATTGTTGTGAGGAAGCACCTGATAATTATTACAACAACCTCTGTTCGACCACA 1140
consensus_11135#1 TTCTGGCATTGTTGTGAGGAAGCACCTGATAATTATTACAACAACCTCTGTTCGACCACA 149
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 CCAGGCATATTACTTAAATCGTTTGGCTCATGTATTAAAAGATGTCCCGCCTCCTCTTCT 1200
consensus_11135#1 CCAGGCATATTACTTAAATCGTTTGGCTCATGTATTAAAAGATGTCCCGCCTCCTCTTCT 209
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 GTGGATAGTGGCAGAGTGGCCATATCAGTCCCGCGAAACTGCAGAAATACTGAGGTCTTC 1260
consensus_11135#1 GTGGATAGTGGCAGAGTGGCCATATCAGTCCCGCGAAACTGCAGAAATACTGAGGTCTTC 269
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 TGGGATCATGTACAGACATCTTATCTGCAATCGGAATACTACAAATATAAGGAAGATTGT 1320
consensus_11135#1 TGGGATCATGTACAGACATCTTATCTGCAATCGGAATACTACAAATATAAGGAAGATTGT 329
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 TGTCTGCCAAAAGAATAATGCAATTTTTCACATTAAGAAGCACCGTCTAGATGGTATAGT 1380
consensus_11135#1 TGTCTGCCAAAAGAATAATGCAATTTTTCACATTAAGAAGCACCGTCTAGATGGTATAGT 389
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 GCATTTCGCTGATGAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAAT 1440
consensus_11135#1 GCATTTCGCTGATGAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAAT 449
consensus_11135#2 -----------------------TAAGCTCGGTTAACTTATT--ACACAATTATGNAGGT 35
* *** * * ** * ** * *** * * *
consensus_11135#0 AAGGCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGTGGTTCT 1500
consensus_11135#1 AAGGCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGTGGTTCT 509
consensus_11135#2 GAGGCAAATGCAACCATTGT-GGTACCAGTTAGATCAAGTACATAAGACAAGGTGCTGT- 93
**** * *** * *** ** * * *** * *** *** *
consensus_11135#0 AGAAGGCCCCGTTTGTAAGGGTAATCAAGTCACTGGATGGCATACAAATCAGAGAAGGGG 1560
consensus_11135#1 AGAAGGCCCCGTTTGTAAGGGTAATCAAGTCACTGGATGGCATACAAATCAGAGAAGGGG 569
consensus_11135#2 -GAAGAACTAGTAACACATGGCAATTCC-TTGTAAGTTTAGATACAACCATGAAATGGAA 151
**** * ** * ** *** * * * ****** ** * **
consensus_11135#0 TGTATCACGTCGATTTCCAATTGGTTTCTCTGGATTTGCTTTTAACAGCACTATACTTTG 1620
consensus_11135#1 TGTATCACGTCGATTTCCAATTGGTTTCTCTGGATTTGCTTTTAACAGCACTATACTTTG 629
consensus_11135#2 --------GCTAATATATAGTAGATA-----GGAAGTATCTCT----------TACTAGA 188
* ** * * * * * *** * * * ****
consensus_11135#0 GGATCCTCAGAGATGGAACAGCCCCACTTTAGAGTCTATTATAGTCCATTCAGGTGGCAG 1680
consensus_11135#1 GGATCCTCAGAGATGGAACAGCCCCACTTTAGAGTCTATTATAGTCCATTCAGGTGGCAG 689
consensus_11135#2 AGCAACTCAAGAAGGTAGCAATCATACTGAAACATCT-----------------TGGCA- 230
* **** * * * ** * *** * *** *****
consensus_11135#0 AGGTGGCTTGCAG----------------------------------------------- 1693
consensus_11135#1 AGGTGGCTTGCAGTTAAACACGCCCTTTCAAGATCTGGTAAGCTCGGTTAACTTATTACA 749
consensus_11135#2 -------TTACAG----------------------------------------------- 236
** ***
consensus_11135#0 ------------------------------------------------------------
consensus_11135#1 CAATTATTGAGGTGAGGCAAATGCAACCACTGTGGTACCAGTTAGATCAAGTACATAAGA 809
consensus_11135#2 ------------------------------------------------------------
consensus_11135#0 ----------------------------------------GAGTCAAGATTTATCGAGAA 1713
consensus_11135#1 CAAAGTGCTGTGAAGAACTAGTAACACATGGCAATTCCTTGAGTCAAGATTTATCGAGAA 869
consensus_11135#2 ----------------------------------------GAGTCAAGATTTATCGAGAA 256
********************
consensus_11135#0 GCTTGTTGAGGACGAGAGTCAAATGGAAGGCCTTGGGGATAATTGCACTCGTGTTATGGT 1773
consensus_11135#1 GCTTGTTGAGGACGAGAGTCAAATGGAAGGCCTTGGGGATAATTGCACTCGTGTTATGGT 929
consensus_11135#2 GCTTGTTGAGGACGAGAGTCAAATGGAAGGCCTTGGGGATAATTGCACTCGTGTTATGGT 316
************************************************************
consensus_11135#0 CTGGAATTTCGAACTGGAACCTCCTCAAGTCAACTACCCAATTGGCTGGCTGCTGCAGAG 1833
consensus_11135#1 CTGGAATTTCGAACTGGAACCTCCTCAAGTCAACTACCCAATTGGCTGGCTGCTGCAGAG 989
consensus_11135#2 CTGGAATTTCGAACTGGAACCTCCTCAAGTCAACTACCCAATTGGCTGGCTGCTGCAGAG 376
************************************************************
consensus_11135#0 GAATCTGGATGCTGTTATGCCAATAACATAACTGTCCTGCTGCTGCTCTTTTTGTTTGCC 1893
consensus_11135#1 GAATCTGGATGCTGTTGTGCCAATAACATAACTGTCCTGCTGCTCCTCTTTTTGTTTGCC 1049
consensus_11135#2 GAATCTGGATGCTGTTATGCCAATAACATAACTGTCCTGCTGCTGCTCTTTTTGTTTGCC 436
**************** *************************** ***************
consensus_11135#0 ATCCTAGTGTGAATGATGCCTTCCTGAACTTGGTAGCGTCCAGGATCATGAGAAGCTGCT 1953
consensus_11135#1 ATCCTAGTGTGAATGATGCCTTCCTGAACTTGGTAGCGTCCAGGATCATGAGAAGCTGCT 1109
consensus_11135#2 ATCCTAGTGTGAATGATGCCTTCCTGAACTTGGTAGCGTCCAGGATCATGAGAAGCTGCT 496
************************************************************
consensus_11135#0 CTGCCAAGATCTGGTCCAAATAATGTCATACTAGTAACAGTTGAAAAGTGAGAAGCCTGA 2013
consensus_11135#1 CTGCCAAGATCTGGTCCAAATAATGTCATACTAGTAACAGTTGAAAAGTGAGAAGCCTGA 1169
consensus_11135#2 CTGCCAAGATCTGGTCCAAATAATGTCATACTAGTAACAGTTGAAAAGTGAGAAGCCTGA 556
************************************************************
consensus_11135#0 CAAAAGAAAGTTTTTCTCTCTGTTGCATTCTTTTCTATATGTTCATTTTTTCCCCATATT 2073
consensus_11135#1 CAAAAGAAAGTTTTTCTCTCTGTTGCATTCTTTTCTATATGTTCATTTTTTCCCCATATT 1229
consensus_11135#2 CAAAAGAAAGTTTTTCTCTCTGTTGCATTCTTTTCTATATGTTCATTTTTTCCCCATATT 616
************************************************************
consensus_11135#0 CATCCAGCTAGATATAGCCATGTACATTTCATTTTTTTTCTCGTTTCTGTCCGTTATATA 2133
consensus_11135#1 CATCCAGCTAGATATAGCCATGTACATTTCATTTTTTTTCTCGTTTCTGTCCGTTATATA 1289
consensus_11135#2 CATCCAGCTAGATATAGCCATGTACATTTCATTTTTTTTCTCGTTTCTGTCCGTTATATA 676
************************************************************
consensus_11135#0 CATACATATCACCTCACAGATGTGAATGTTCCCCTCCATTGGAACTGTTGAAGAGCAAAG 2193
consensus_11135#1 CATACATATCACCTCACAGATGTGAATGTTCCCCTCCATTGGAACTGTTGAAGAGCAAAG 1349
consensus_11135#2 CATACATATCACCTCACAGATGTGAATGTTCCCCTCCATTGGAACTGTTGAAGAGCAAAG 736
************************************************************
consensus_11135#0 CAGATACTCTCTTTGATATACATGAACAAAGGTTAAATCAAAACCATAGATTGTACAAAA 2253
consensus_11135#1 CAGATACTCTCTTTGATATACATGAACAAAGGTTAAATCAAAACCATAGATTGTACACAC 1409
consensus_11135#2 CAGATACTCTGTTTGATATACATGAACAAAGGTTAAATCAAAA----------------- 779
********** ********************************
consensus_11135#0 A------- 2254
consensus_11135#1 AATGGTGT 1417
consensus_11135#2 --------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||