cluster # 1114

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Oryza sativa
cluster # 1114 cluster # 1114 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1114#0 length = 453 sequences # 1

consensus_1114#1 length = 242 sequences # 1

consensusID : consensus_1114#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [TACTTCACGGAGCTTCTGAGTGGTGACACAGGAGGCCTTCTTTCAGCTTCCTAGTGCACACAAGCCCCTGCTGAGTGACCCTGCCTTCCGCCCAACTCGTCGAGAAATATGCTGCAGATGAGAAGGCTTTCTTTGAAGACTACACAGGAGGCCCCACCTCAAGCTCTCCGAACTGGGGTTCGCTGATGCTTAAGAGGTTTCTAGTCTACTACTGCTAGTACCTTGCCCCTGGTACTCTTGTTTTTGCATCTAGGCTAGGCCACGTGTGAACCACCAAGACTACCACCTGTGAGTCGCCTCTGTAATAAAACCCTGTTCGGCCTATGCCATCCTCAGTACGTTGTCAATGTCTCGGTGGGCTGTTATGCTCAACTGCAATGCTGCATCCACTGAAACCTCTTTCTAGATGTGTTGGTATGAAATGCGGTATTGCCCTCCCGATTAAAAAAAAAA]

[+] EMBL BI805356             [TACTTCACGGAGCTTCTGAGTGGTGACACAGGAGGCCTTCTTTCAGCTTCCTAGTGCACACAAGCCCCTGCTGAGTGACCCTGCCTTCCGCCCAACTCGTCGAGAAATATGCTGCAGATGAGAAGGCTTTCTTTGAAGACTACACAGGAGGCCCCACCTCAAGCTCTCCGAACTGGGGTTCGCTGATGCTTAAGAGGTTTCTAGTCTACTACTGCTAGTACCTTGCCCCTGGTACTCTTGTTTTTGCATCTAGGCTAGGCCACGTGTGAACCACCAAGACTACCACCTGTGAGTCGCCTCTGTAATAAAACCCTGTTCGGCCTATGCCATCCTCAGTACGTTGTCAATGTCTCGGTGGGCTGTTATGCTCAACTGCAATGCTGCATCCACTGAAACCTCTTTCTAGATGTGTTGGTATGAAATGCGGTATTGCCCTCCCGATTAAAAAAAAAA]




>consensus_1114#0
TACTTCACGGAGCTTCTGAGTGGTGACACAGGAGGCCTTCTTTCAGCTTCCTAGTGCACA
CAAGCCCCTGCTGAGTGACCCTGCCTTCCGCCCAACTCGTCGAGAAATATGCTGCAGATG
AGAAGGCTTTCTTTGAAGACTACACAGGAGGCCCCACCTCAAGCTCTCCGAACTGGGGTT
CGCTGATGCTTAAGAGGTTTCTAGTCTACTACTGCTAGTACCTTGCCCCTGGTACTCTTG
TTTTTGCATCTAGGCTAGGCCACGTGTGAACCACCAAGACTACCACCTGTGAGTCGCCTC
TGTAATAAAACCCTGTTCGGCCTATGCCATCCTCAGTACGTTGTCAATGTCTCGGTGGGC
TGTTATGCTCAACTGCAATGCTGCATCCACTGAAACCTCTTTCTAGATGTGTTGGTATGA
AATGCGGTATTGCCCTCCCGATTAAAAAAAAAA

consensusID : consensus_1114#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 242
fasta sequence

                              [ACTGTGAGTCGCCTCTGTAATAAAATTTGTTCGGCCTATGGCCATCCTCAGTACGTTGTCAATGTCTCGGTGGGCTGTTATGCTCAACTGCAATGCTGCATCCACTGAAACCTCTTTCTAGATGTGTTGGTATGAAATGCGGTATTGCGTTCCCGATTTCCCCTGCTACTGTCTTGAACCTGCCGTGGTACAATCCTTGTTTGCTGCACTTCATTTTTAAAAAAAAAAAAAAAACCAAAAAA]

[+] EMBL CA753754             [ACTGTGAGTCGCCTCTGTAATAAAATTTGTTCGGCCTATGGCCATCCTCAGTACGTTGTCAATGTCTCGGTGGGCTGTTATGCTCAACTGCAATGCTGCATCCACTGAAACCTCTTTCTAGATGTGTTGGTATGAAATGCGGTATTGCGTTCCCGATTTCCCCTGCTACTGTCTTGAACCTGCCGTGGTACAATCCTTGTTTGCTGCACTTCATTTTTAAAAAAAAAAAAAAAACCAAAAAA]




>consensus_1114#1
ACTGTGAGTCGCCTCTGTAATAAAATTTGTTCGGCCTATGGCCATCCTCAGTACGTTGTC
AATGTCTCGGTGGGCTGTTATGCTCAACTGCAATGCTGCATCCACTGAAACCTCTTTCTA
GATGTGTTGGTATGAAATGCGGTATTGCGTTCCCGATTTCCCCTGCTACTGTCTTGAACC
TGCCGTGGTACAATCCTTGTTTGCTGCACTTCATTTTTAAAAAAAAAAAAAAAACCAAAA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1114#0      TACTTCACGGAGCTTCTGAGTGGTGACACAGGAGGCCTTCTTTCAGCTTCCTAGTGCACA 60
consensus_1114#1      ------------------------------------------------------------
                                                                                  

consensus_1114#0      CAAGCCCCTGCTGAGTGACCCTGCCTTCCGCCCAACTCGTCGAGAAATATGCTGCAGATG 120
consensus_1114#1      ------------------------------------------------------------
                                                                                  

consensus_1114#0      AGAAGGCTTTCTTTGAAGACTACACAGGAGGCCCCACCTCAAGCTCTCCGAACTGGGGTT 180
consensus_1114#1      ------------------------------------------------------------
                                                                                  

consensus_1114#0      CGCTGATGCTTAAGAGGTTTCTAGTCTACTACTGCTAGTACCTTGCCCCTGGTACTCTTG 240
consensus_1114#1      ------------------------------------------------------------
                                                                                  

consensus_1114#0      TTTTTGCATCTAGGCTAGGCCACGTGTGAACCACCAAGACTACCACCTGTGAGTCGCCTC 300
consensus_1114#1      ---------------------------------------------ACTGTGAGTCGCCTC 15
                                                                    **************

consensus_1114#0      TGTAATAAAACCCTGTTCGGCCTATG-CCATCCTCAGTACGTTGTCAATGTCTCGGTGGG 359
consensus_1114#1      TGTAATAAAATT-TGTTCGGCCTATGGCCATCCTCAGTACGTTGTCAATGTCTCGGTGGG 74
                      **********   ************* *********************************

consensus_1114#0      CTGTTATGCTCAACTGCAATGCTGCATCCACTGAAACCTCTTTCTAGATGTGTTGGTATG 419
consensus_1114#1      CTGTTATGCTCAACTGCAATGCTGCATCCACTGAAACCTCTTTCTAGATGTGTTGGTATG 134
                      ************************************************************

consensus_1114#0      AAATGCGGTATTGCCCTCCCGATTAAAAAAAAAA-------------------------- 453
consensus_1114#1      AAATGCGGTATTGCGTTCCCGATTTCCCCTGCTACTGTCTTGAACCTGCCGTGGTACAAT 194
                      **************  ********         *                          

consensus_1114#0      ------------------------------------------------
consensus_1114#1      CCTTGTTTGCTGCACTTCATTTTTAAAAAAAAAAAAAAAACCAAAAAA 242