These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1378 fasta sequence [ATCCTACTTAAGCAGTAGCTAGTAAGCTAGCTAAGCACACACACACTTACTAATTCAGCTAAGGATTTGGAGGATC-GGAGATGGTGATGGTGAAGCTTAACGCGGCGGTGGCCGCCGCCGCCGTTGTGCTGTCTCTGTTGGTGGTGGTCGCCGTGCATCCGGCGGCGGCCGACGCCGGCGGCGATTGGTACGGCAAGAAGAGCATCGAGGAGACGGTGAGGAAGGAGGTGGAGAAGGCCATCAAGCACAATCCCGGCGTGGGTGCCGCCCTTGTCCGTTTGGTGTTCCATGACTGCTGGGTCAACGGTTGTGATGGATCGGTGCTCTTGGACAAGACGCCGTACAGCAGCAGCACGGAGAAGGCGGCGGCGAACAACATCGGCCTGGACGGCTTCGACGTCATCGACGCCATCAAATCCAAGCTGGGCGCCGCCGTCTCCTGCGCCGACATCGTGGTGCTCGCCGGCCGCGACGCCTCCGCCATCCTCAGCGGCGGCAGGATCACCTACGACGTCGGCACGGGCCGCAAGGACGGCGTCGTCTCCTCCGCCGCCGCCGCCGACGCCGTCCTCCCGGAGTCCACCTTCGACTTCGCCCAGCTCAAGGACAACTTCGCCAGCAAGGGGCTCACCCAGGGGGAGCTCGTCATCCTCTCCGGCGCCCACTCCATCGGCGTCGCCCACCTCTCCTCCTTCCACGACCGCCTCGCCGCCGCCACCGCCACGCCCATAGACGCCACGTACGCGTCGGCGCTCGCCGCCGACGTCGAACGGCAGAAGGGTGTCCAGCGCACGGACAACCCGGCGGAGAAGAACAACATCCGCGACATGGGCGCGGCGTTCCAGAGCGCCGCCGGGTA-CGACGCCGCCGGCGTGGACACGGC-GGCGGTGGGGGCGCTGGACAACAGCTACTACCACAACAACCTGCAGAACCGGGTGCTGTTCAAGTCGGACTGGGTGCTGCGCACCGACGGCGACGCCGCCGCCGACCTCGCCGAGTACAGGGACAACGCCACCAAGTGGGACGTGGACTTCGCCGCCGCCATGGCCAAGCTCAGCAAGCTCCCCGCCGAGGGCACCCACTTCGAGATCAGGAAGACTTGCAGATGCACCAACCAGAACTACTACTAGTAGTAGTAGTAACTAGTCAACGATCGAGTCAGCGGAAAAAAATACGACGGTATTATACTAGTATACGCGTAGTGTACGTACATTAATACGACTACTTGTACGTACCTACTGTAATATCACCTTGGTTTAAAATTATTACTACTGCATCGTTAATCTTAAGTCTTTGATTAATTTTGTAGCTAATGTATAATAAGGGCTTATAATGCAATTCATTTCTAGCATTCTATAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK099362 [ATCCTACTTAAGCAGTAGCTAGTAAGCTAGCTAAGCACACACACACTTACTAATTCAGCTAAGGATTTGGAGGATC GGAGATGGTGATGGTGAAGCTTAACGCGGCGGTGGCCGCCGCCGCCGTTGTGCTGTCTCTGTTGGTGGTGGTCGCCGTGCATCCGGCGGCGGCCGACGCCGGCGGCGATTGGTACGGCAAGAAGAGCATCGAGGAGACGGTGAGGAAGGAGGTGGAGAAGGCCATCAAGCACAATCCCGGCGTGGGTGCCGCCCTTGTCCGTTTGGTGTTCCATGACTGCTGGGTCAACGGTTGTGATGGATCGGTGCTCTTGGACAAGACGCCGTACAGCAGCAGCACGGAGAAGGCGGCGGCGAACAACATCGGCCTGGACGGCTTCGACGTCATCGACGCCATCAAATCCAAGCTGGGCGCCGCCGTCTCCTGCGCGGACATCGTGGTGCTCGCCGGCCGCGACGCCTCCGCCATCCTCAGCGGCGGCAGGATCACCTACGACGTCGGCACGGGCCGCAAGGACGGCGTCGTCTCCTCCGCCGCCGCCGCCGACGCCGTCCTCCCGGAGTCCACCTTCGACTTCGCCCAGCTCAAGGACAACTTCGCCAGCAAGGGGCTCACCCAGGGGGAGCTCGTCATCCTCTCCGGCGCCCACTCCATCGGCGTCGCCCACCTCTCCTCCTTCCACGACCGCCTCGCCGCCGCCACCGCCACGCCCATAGACGCCACGTACGCGTCGGCGCTCGCCGCCGACGTCGAACGGCAGAAGGGTGTCCAGCGCACGGACAACCCGGCGGAGAAGAACAACATCCGCGACATGGGCGCGGCGTTCCAGAGCGCCGCCGGGTA CGACGCCGCCGGCGTGGACACGGC GGCGGTGGGGGCGCTGGACAACAGCTACTACCACAACAACCTGCAGAACCGGGTGCTGTTCAAGTCGGACTGGGTGCTGCGCACCGACGGCGACGCCGCCGCCGACCTCGCCGAGTACAGGGACAACGCCACCAAGTGGGACGTGGACTTCGCCGCCGCCATGGCCAAGCTCAGCAAGCTCCCCGCCGAGGGCACCCACTTCGAGATCAGGAAGACTTGCAGATGCACCAACCAGAACTACTACTAGTAGTAGTAGTAACTAGTCAACGATCGAGTCAGCGGAAAAAAATACGACGGTATTATACTAGTATACGCGTAGTGTACGTACATTAATACGACTACTTGTACGTACCTACTGTAATATCACCTTGGTTTAAAATTATTACTACTGCATCGTTAATCTTAAGTCTTTGATTAATTTTGTAGCTAATGTATAATAAGGG ] [+] EMBL AK064360 [ TCCTACTTAAGCAGTAGCTAGTAAGCTAGCTAAGCACACACACACTTACTAATTCAGCTAAGGATTTGGAGGATC GGAGATGGTGATGGTGAAGCTTAACGCGGCGGTGGCCGCCGCCGCCGTTGTGCTGTCTCTGTTGGTGGTGGTCGCCGTGCATCCGGCGGCGGCCGACGCCGGCGGCGATTGGTACGGCAAGAAGAGCATCGAGGAGACGGTGAGGAAGGAGGTGGAGAAGGCCATCAAGCACAATCCCGGCGTGGGTGCCGCCCTTGTCCGTTTGGTGTTCCATGACTGCTGGGTCAACGGTTGTGATGGATCGGTGCTCTTGGACAAGACGCCGTACAGCAGCAGCACGGAGAAGGCGGCGGCGAACAACATCGGCCTGGACGGCTTCGACGTCATCGACGCCATCAAATCCAAGCTGGGCGCCGCCGTCTCCTGCGCCGACATCGTGGTGCTCGCCGGCCGCGACGCCTCCGCCATCCTCAGCGGCGGCAGGATCACCTACGACGTCGGCACGGGCCGCAAGGACGGCGTCGTCTCCTCCGCCGCCGCCGCCGACGCCGTCCTCCCGGAGTCCACCTTCGACTTCGCCCAGCTCAAGGACAACTTCGCCAGCAAGGGGCTCACCCAGGGGGAGCTCGTCATCCTCTCCGGCGCCCACTCCATCGGCGTCGCCCACCTCTCCTCCTTCCACGACCGCCTCGCCGCCGCCACCGCCACGCCCATAGACGCCACGTACGCGTCGGCGCTCGCCGCCGACGTCGAACGGCAGAAGGGTGTCCAGCGCACGGACAACCCGGCGGAGAAGAACAACATCCGCGACATGGGCGCGGCGTTCCAGAGCGCCGCCGGGTA CGACGCCGCCGGCGTGGACACGGC GGCGGTGGGGGCGCTGGACAACAGCTACTACCACAACAACCTGCAGAACCGGGTGCTGTTCAAGTCGGACTGGGTGCTGCGCACCGACGGCGACGCCGCCGCCGACCTCGCCGAGTACAGGGACAACGCCACCAAGTGGGACGTGGACTTCGCCTCCGCCATGGCCAAGCTCAGCAAGCTCCCCGCCGAGGGCACCCACTTCGAGATCAGGAAGACTTGCAGATGCACCAACCAGAACTACTACTAGTAGTAGTAGTAACTAGTCAACGATCGAGTCAGCGGAAAAAAATACGACGGTATTATACTAGTATACGCGTAGTGTACGTACATTAATACGACTACTTGTACGTACCTACTGTAATATCACCTTGGTTTAAAATTATTACTACTGCATCGTTAATCTTAAGTCTTTGATTAATTTTGTAGCTAATGTATAATAAGGGCTTATAATGCAATTCATTTCT ] [+] EMBL AK102034 [ TAAGCACACACACACTTACTAATTCAGCTAAGGATTTGGAGGATC GGAGATGGTGATGGTGAAGCTTAACGCGGCGGTGGCCGCCGCCGCCGTTGTGCTGTCTCTGTTGGTGGTGGTCGCCGTGCATCCGGCGGCGGCCGACGCCGGCGGCGATTGGTACGGCAAGAAGAGCATCGAGGAGACGGTGAGGAAGGAGGTGGAGAAGGCCATCAAGCACAATCCCGGCGTGGGTGCCGCCCTTGTCCGTTTGGTGTTCCATGACTGCTGGGTCAACGGTTGTGATGGATCGGTGCTCTTGGACAAGACGCCGTACAGCAGCAGCACGGAGAAGGCGGCGGCGAACAACATCGGCCTGGACGGCTTCGACGTCATCGACGCCATCAAATCCAAGCTGGGCGCCGCCGTCTCCTGCGCCGACATCGTGGTGCTCGCCGGCCGCGACGCCTCCGCCATCCTCAGCGGCGGCAGGATCACCTACGACGTCGGCACGGGCCGCAAGGACGGCGTCGTCTCCTCCGCCGCCGCCGCCGACGCCGTCCTCCCGGAGTCCACCTTCGACTTCGCCCAGCTCAAGGACAACTTCGCCAGCAAGGGGCTCACCCAGGGGGAGCTCGTCATCCTCTCCGGCGCCCACTCCATCGGCGTCGCCCACCTCTCCTCCTTCCACGACCGCCTCGCCGCCGCCACCGCCACGCCCATAGACGCCACGTACGCGTCGGCGCTCGCCGCCGACGTCGAACGGCAGAAGGGTGTCCAGCGCACGGACAACCCGGCGGAGAAGAACAACATCCGCGACATGGGCGCGGCGTTCCAGAGCGCCGCCGGGTA CGACGCCGCCGGCGTGGACACGGC GGCGGTGGGGGCGCTGGACAACAGCTACTACCACAACAACCTGCAGAACCGGGTGCTGTTCAAGTCGGACTGGGTGCTGCGCACCGACGGCGACGCCGCCGCCGACCTCGCCGAGTACAGGGACAACGCCACCAAGTGGGACGTGGACTTCGCCGCCGCCATGGCCAAGCTCAGCAAGCTCCCCGCCGAGGGCACCCACTTCGAGATCAGGAAGACTTGCAGATGCACCAACCAGAACTACTACTAGTAGTAGTAGTAACTAGTCAACGATCGAGTCAGCGGAAAAAAATACGACGGTATTATACTAGTATACGCGTAGTGTACGTACATTAATACGACTACTTGTACGTACCTACTGTAATATCACCTTGGTTTAAAATTATTACTACTGCATCGTTAATCTTAAGTCTTTGATTAATTTTGTAGCTAATGTATAATAAG ] [+] EMBL OSR16741A [ ATTTGGAGGATCTGGAGATGGTGATGGTGAAGCTTAACGNGGCGGTGGCCG CG CGCCGTTGTGCTGTCTCTGTTGGTGGTGGTCGCCGTGCATCCGGCGGCGGCCGACG CGGCGGCGATTGGTACGGCAAGAAGAGCATCGAGGAGACGGTGAGGAAGGAGGTGGAGAAGGCCATCAAGCACAATCCCGGCGTGGGTTCCGCCCTTNTCCGTTTGGTGTTCCATGACTNCTGGGTCAACGGTTGTAATGGATCGGTGCTCTTGGACAAGACGCCGTACAGCAGCAGCACGGAGAAGNCGGCGGCGAACAACATCGGCCTTGACGGCTTCGACGTCATCGA ] [+] EMBL OSR12151A [ GTGCTCTTGGACAAGACGCCGTACAGCAGCAGCACGGAGAAGGNGGCGGCGAACAACATCGGCCTGGACGGCTTCGACGTCATCGACGCCATCAAATCCAAGCTGGGNGCCGCCGTCTCCTGCGCCGACATCGTGGTGCTCGCCGGCCGCGACGCCTCCGNCATCCTCAGCGGCGGCAGGTTCACCTACGACGTCGGCACGGGCCGCANGGACGGCGTCGTCTCCTCCGCCGCCGNNGCCGACGCCGTCCTCCCGGAGTCCACC ] [+] EMBL AU098344 [ GCGACATGGGCNCGGCGTTCCAGAGCGCCGCCGGGTACCAACGCCGCNGGCGTGGACACGACGGGCGGTGGGGGCGCTGGACAACAGCTACTACCACAACAACCTGCAGAACCGGGTGCTGTTCAAGTCGGACTGGGTGCTGCGCACCGACGGCGACGCCGCCGCCGACCTCGCCGAGTACAGGGACAACGCCACCAAGTGGGACGTGGACTTCGCCGCCGCCATGGCCAAGCTCAGCAAGCTCCCCGCCGAGGGCACCCACTTCGAGATCAGGAAGACTTGCAGATGCACCAACCAGAACTACTACTAGTAGTAGTAGTAACTAGTCAACGATCGAGTCAGCGGAAAAAAATACGACGGTATTATACTAGTATACGCGTAGTGTACGTACATTAATACGACTACTTGTACGTACCTACTGTAATATCACCTTGGTTTAAAATTATTACTACTGCATCGTTAATCTTAAGTCTTTGATTAATTTTGTAGCTAATGTATAATAAGGGCTTATAATGCAATTCATTTCTAGCATTCTATAAAAA ] [+] EMBL C20484 [ AACGCCACCAAGTGGGACGTGGACTTCGCCGCCGCCATGGCCAAGCTCAGCAAGCTCCCCGCCGAGGGCACCCACTTCGAGATNAGGAAGACTTGCAGATGCNCCAACCAGAACTACTACTAGTAGTAGTAGTAACTAGTCANCGATCGAGTCAGCGGAAAAAAATACGACGGTATTATACTAGTATACNCGTAGTGTACGTACATTAATACGACTACTTGTNCGTACCTACTGTAATATCNCCTTGGTTTAAAATTATTACTACTGCATCGTTAATCTTAAGTCTTTGATTAATTTTGTAGCTAATGTATAATAAGGGCTTATAATGCAATTCATTTCTAGNATTCTATAATAAAAAAAAA ] [+] EMBL CA755063 [ GCAGATGCACCAACCAGAACTACTACTAGTAGTAGTAGTAACTAGTCAACGATCGAGTCAGCGGAAAAAAATACGACGGTATTATACTAGTATACGCGTAGTGTACGTACATTAATACGACTACTTGTACGTACCTACTGTAATATCACCTTGGTTTAAAATTATTACTACTGCATCGTTAATCTTAAGTCTTTGATTAATTTTGTAGCTNATGTATAATAAGGGCTTATAATGCAATTCATTTCTAGCATTCTATAANANAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||