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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11148#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1517 fasta sequence
[TTTTGCTTACTCTCTCCGCCCTCCTAAACCCTACGACCATGCCGACCCTCGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGGCGGGGCACTGCGATACGCCGTGCTGGGCGGGGTTCGGTCGCTCTCATCCCTCCAGCCGTCATCCTCCTCCTCCGCCGCAGCCGCCGCCAGCGAGGAGGTGCTGGTGGAAGGCAAGGCCAGCGCGCGCGCCGCCGTGCTCAACCGCCCCGGCCATCTCAACGCGCTCACGACCACCATGGGAGCTAGGCTCAATAAGTTTTATATGTCATGGGAGGACAACCCTGATATTGGCTTTGTCATGATGAAGGGCAGCGGCCGAGCATTCTGTGCTGGTGGGGATGTTGTTAGGTTGCACCAGCTTATAAGTGAAGGAAAGTTGGACGAGTGTAAGGATTTCTTCAAGACTTTGTACAGTTTTATTTATGTTCTGGGCACATACTTGAAGCCACATGTTGCCATTCTTGATGGTGTTACCATGGGTGGAGGTGGAGGTGTTTCCATTCCCGGAACATTTCGCATTGTCACTGATAGAACGGTATTTGCAACTCCAGAAGTACATATTGGCTTCCATCCTGATGCTGCTGCCTCCTTTTATTTGTCCCATCTGACTGGTCATGTTGGTGAATATTTGGCCTTGACTGGTGAAAAACTCAATGGAGTGGATATGATCGCACTTGGCCTTGCTACACACTATTCCATGAGTGATCGGTTGAATCTGGTTGATGAACGCCTTGCAACATTGTTAACTGATGATCCATCAGTTATTGATACTTCCCTTACACATTATGGAGATCTTGTGTATCCAGATAAGAGTAGCATTGTTCATAGGCTGGAGGTTATAGATAAATGTTTCAGCCTTGAAACAGTCGAGGAGATTGTGGATGCCATGGAAATTGAAGCAGCTAGGTTAAATGAAGATTGGTCTACCTTGGCCCTGAAACGGTTGAAAGAGGCTTCTCCTCTTGCGTTGAAAGTTTCACTGCGATCGATACGTGAAGGTAGATACCAGACACTTGATGAATGCCTTGTGCGTGAATACCGCATGTCTATCAATGGAATCTCAGAGAAATTTTCTCATGAATTTCGTGAGGGTGTCAGAGCACGTCTTGTGGAGAAGGACCTAGCTCCAAAGTGGGATCCACCTGCCCTTGAGTATGTATCAGCGGACATGGTCGATTCTTACTTTGCTCCCCTGGGTGAATTTGAGCCTGAGTTGACACTGCCTACTGAATCGCGAGAGGCATTTGTATGATGACTCTGCATGACAATTCCAAGTAGCGCTTTTGTTTGAAGCCTTATAGATTTTTGAGCCCACACTGTCGACCGTTGGCAGCACATAATAACAGATAGGATTCTCAATCTATTCTTGTACCATATATGCCTTGGTGTATTGAAAGGAACTGATCTCCAAGGTGAACTCCTACCATTCTCACTTTCATAAATTAATGCCTTCGCTTCATTTCATTTATACTATGGCAAAGCGTGTCCAAGTCGC]
[+] EMBL AK068963 [TTTTGCTTACTCTCTCCGCCCTCCTAAACCCTACGACCATGCCGACCCTCGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGGCGGGGCACTGCGATACGCCGTGCTGGGCGGGGTTCGGTCGCTCTCATCCCTCCAGCCGTCATCCTCCTCCTCCGCCGCAGCCGCCGCCAGCGAGGAGGTGCTGGTGGAAGGCAAGGCCAGCGCGCGCGCCGCCGTGCTCAACCGCCCCGGCCATCTCAACGCGCTCACGACCACCATGGGAGCTAGGCTCAATAAGTTTTATATGTCATGGGAGGACAACCCTGATATTGGCTTTGTCATGATGAAGGGCAGCGGCCGAGCATTCTGTGCTGGTGGGGATGTTGTTAGGTTGCACCAGCTTATAAGTGAAGGAAAGTTGGACGAGTGTAAGGATTTCTTCAAGACTTTGTACAGTTTTATTTATGTTCTGGGCACATACTTGAAGCCACATGTTGCCATTCTTGATGGTGTTACCATGGGTGGAGGTGGAGGTGTTTCCATTCCCGGAACATTTCGCATTGTCACTGATAGAACGGTATTTGCAACTCCAGAAGTACATATTGGCTTCCATCCTGATGCTGCTGCCTCCTTTTATTTGTCCCATCTGACTGGTCATGTTGGTGAATATTTGGCCTTGACTGGTGAAAAACTCAATGGAGTGGATATGATCGCACTTGGCCTTGCTACACACTATTCCATGAGTGATCGGTTGAATCTGGTTGATGAACGCCTTGCAACATTGTTAACTGATGATCCATCAGTTATTGATACTTCCCTTACACATTATGGAGATCTTGTGTATCCAGATAAGAGTAGCATTGTTCATAGGCTGGAGGTTATAGATAAATGTTTCAGCCTTGAAACAGTCGAGGAGATTGTGGATGCCATGGAAATTGAAGCAGCTAGGTTAAATGAAGATTGGTCTACCTTGGCCCTGAAACGGTTGAAAGAGGCTTCTCCTCTTGCGTTGAAAGTTTCACTGCGATCGATACGTGAAGGTAGATACCAGACACTTGATGAATGCCTTGTGCGTGAATACCGCATGTCTATCAATGGAATCTCAGAGAAATTTTCTCATGAATTTCGTGAGGGTGTCAGAGCACGTCTTGTGGAGAAGGACCTAGCTCCAAAGTGGGATCCACCTGCCCTTGAGTATGTATCAGCGGACATGGTCGATTCTTACTTTGCTCCCCTGGGTGAATTTGAGCCTGAGTTGACACTGCCTACTGAATCGCGAGAGGCATTTGTATGATGACTCTGCATGACAATTCCAAGTAGCGCTTTTGTTTGAAGCCTTATAGATTTTTGAGCCCACACTGTCGACCGTTGGCAGCACATAATAACAGATAGGATTCTCAATCTATTCTTGTACCATATATGCCTTGGTGTATTGAAAGGAACTGATCTCCAAGGTGAACTCCTACCATTCTCACTTTCATAAATTAATGCCTTCGCTTCATTT ]
[+] EMBL AK099250 [ CGCCCTCCTAAACCCTACGACCATGCCGACCCTCGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGGCGGGGCACTGCGATACGCCGTGCTGGGCGGGGTTCGGTCGCTCTCATCCCTCCAGCCGTCATCCTCCTCCTCCGCCGCAGCCGCCGCCAGCGAGGAGGTGCTGGTGGAAGGCAAGGCCAGCGCGCGCGCCGCCGTGCTCAACCGCCCCGGCCATCTCAACGCGCTCACGACCACCATGGGAGCTAGGCTCAATAAGTTTTATATGTCATGGGAGGACAACCCTGATATTGGCTTTGTCATGATGAAGGGCAGCGGCCGAGCATTCTGTGCTGGTGGGGATGTTGTTAGGTTGCACCAGCTTATAAGTGAAGGAAAGTTGGACGAGTGTAAGGATTTCTTCAAGACTTTGTACAGTTTTATTTATGTTCTGGGCACATACTTGAAGCCACATGTTGCCATTCTTGATGGTGTTACCATGGGTGGAGGTGGAGGTGTTTCCATTCCCGGAACATTTCGCATTGTCACTGATAGAACGGTATTTGCAACTCCAGAAGTACATATTGGCTTCCATCCTGATGCTGCTGCCTCCTTTTATTTGTCCCATCTGACTGGTCATGTTGGTGAATATTTGGCCTTGACTGGTGAAAAACTCAATGGAGTGGATATGATCGCACTTGGCCTTGCTACACACTATTCCATGAGTGATCGGTTGAATCTGGTTGATGAACGCCTTGCAACATTGTTAACTGATGATCCATCAGTTATTGATACTTCCCTTACACATTATGGAGATCTTGTGTATCCAGATAAGAGTAGCATTGTTCATAGGCTGGAGGTTATAGATAAATGTTTCAGCCTTGAAACAGTCGAGGAGATTGTGGATGCCATGGAAATTGAAGCAGCTAGGTTAAATGAAGATTGGTCTACCTTGGCCCTGAAACGGTTGAAAGAGGCTTCTCCTCTTGCGTTGAAAGTTTCACTGCGATCGATACGTGAAGGTAGATACCAGACACTTGATGAATGCCTTGTGCGTGAATACCGCATGTCTATCAATGGAATCTCAGAGAAATTTTCTCATGAATTTCGTGAGGGTGTCAGAGCACGTCTTGTGGAGAAGGACCTAGCTCCAAAGTGGGATCCACCTGCCCTTGAGTATGTATCAGCGGACATGGTCGATTCTTACTTTGCTCCCCTGGGTGAATTTGAGCCTGAGTTGACACTGCCTACTGAATCGCGAGAGGCATTTGTATGATGACTCTGCATGACAATTCCAAGTAGCGCTTTTGTTTGAAGCCTTATAGATTTTTGAGCCCACACTGTCGACCGTTGGCAGCACATAATAACAGATAGGATTCTCAATCTATTCTTGTACCATATATGCCTTGGTGTATTGAAAGGAACTGATCTCCAAGGTGAACTCCTACCATTCTCACTTTCATAAATTAATGCCTTCGCTTCATTT ]
[+] EMBL OSC101762 [ CCTACGACCATGCCGACCCTCGCCGCCGCCGNCGCCGCCGCCCGCCGCGCCGGGGNGACACTGCGATACGCCGTGCTGGGCGGGGTTCGGTCGCTCTCATCCCTCCAGCCGTNATCCTCCTCCTCCGCCGCAGCCGCCGCCAGCAAGGAGGTGCTGGTGGAAGGCAAGGCCAGCGNGCGNGCCGNCGTGCTCAACCGNCNNGGNCATCTCAACGTGCTCANGACCACTATGGGAGCTAGGCTCAATAAGTTTTATATGTCATGGGAGGACAANCNTGATATTGGCTTTNTCATGATGA ]
[+] EMBL CB659396 [ CCATGCCGACCCTCGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGGCGGGGCACTGCGATACGCCGTGCTGGGCGGGGTTCGGTCGCTCTCATCCCTCCAGCCGTCATCCTCCTCCTCCGCCGCAGCCGCCGCCAGCGAGGAGGTGCTGGTGGAAGGCAAGGCCAGCGCGCGCGCCGCCGTGCTCAACCGCCCCGGCCATCTCAACGCGCTCACGACCACCATGGGAGCTAGGCTCAATAAGTTTTATATGTCATGGGAGGACAACCCTGATATTGGCTTTGTCATGATGAAGGGCAGCGGCCGAGCATTCTGTGCTGGTGGGGATGTTGTTAGGTTGCACCAGCTTATAAGTGAAGGAAAGTTGGACGAGTGTAAGGATTTCTTCAAGACTTTGTACAGTTTTATTTATGTTCTGGGCACATACTTGAAGCCACATGTTGCCATTCTTGATGGTGTTACCATGGGTGGAGGTGGAGGTGTTTCCATTCCCGGAACATTTCGCATTGTCACTGATAGAACGGTATTTGCAACTCCAGAAGTACATATTGGCTTCCATCCTGATGCTGCTGCCTCCTTTTATTTGTCCCATCTGACTGGTCATGTTGGTGAATATTTGGCCTTGACTGGTGAAAAACTCAATGGAGTGGATATGATCGCACTTGGCCTTGCTACACACTATTCCATGAGTGATCGGTTGAATCTGGTTGATGAACGCCTTGCAACATTGTTAACTGATGATCCATCAGTTATTGATACTTCCCTTACACATTATGGAGATCTTGTGTATCCAGATAAGAGTAGC ]
[-] EMBL CB659397 [ CGCCTTGCAACATTGTTAACTGATGATCCATCAGTTATTGATACTTCCCTTACACATTATGGAGATCTTGTGTATCCAGATAAGAGTAGCATTGTTCATAGGCTGGAGGTTATAGATAAATGTTTCAGCCTTGAAACAGTCGAGGAGATTGTGGATGCCATGGAAATTGAAGCAGCTAGGTTAAATGAAGATTGGTCTACCTTGGCCCTGAAACGGTTGAAAGAGGCTTCTCCTCTTGCGTTGAAAGTTTCACTGCGATCGATACGTGAAGGTAGATACCAGACACTTGATGAATGCCTTGTGCGTGAATACCGCATGTCTATCAATGGAATCTCAGAGAAATTTTCTCATGAATTTCGTGAGGGTGTCAGAGCACGTCTTGTGGAGAAGGACCTAGCTCCAAAGTGGGATCCACCTGCCCTTGAGTATGTATCAGCGGACATGGTCGATTCTTACTTTGCTCCCCTGGGTGAATTTGAGCCTGAGTTGACACTGCCTACTGAATCGCGAGAGGCATTTGTATGATGACTCTGCATGACAATTCCAAGTAGCGCTTTTGTTTGAAGCCTTATAGATTTTTGAGCCCACACTGTCGACCGTTGGCAGCACATAATAACAGATAGGATTCTCAATCTATTCTTGTACCATATATGCCTTGGTGTATTGAAAGGAACTGATCTCCAAGGTGAACTCCTACCATTCTCACTTTCATAAATTAATGCCTTCGCTTCATTTCATTTATACTATGGCAAAGCGTGTCCAAGTCGC]
[+] EMBL AA749717 [ ATACCGCATGTCTATCAATGGAATCTCAGAGAAATTTTCTCATGAATTTCGTGAGGGTGTCAGAGCACGTCTTGTGGAGAAGGACCTAGCTCCAAAGTGGGATCCACCTGCCCTTGAGTATGTATCAGCGGACATGGTCGATTCTTACTTT ]
[+] EMBL C96621 [ AGTGGGATCCACCTGCCCTTGAGTNTGTATCAGCGGANATGGTCGATTCTTACTTTGCTCCCCTGGGTGAATTTGAGCCTGAGTTGACACTGCCTACTGAATCGCGAGAGGCATTTGTATGATGACTCTGCATGACAATTCCAAGTAGCGCTTTTGTTTGAANCCTTATAGATTTTTGAGCCCACACTGTCGACCGTTGGCAGCACATAATAACAGATAGGATTCTCAATCTATTCTTGTACCATATATGCCTTGGTGTATTGAAAGGAACTGATCTCCAAGGTGAACTCCTACCATTCTNACTTTCATAAATTAATGCCTTCGCTTNATTTCATTTATACTAaaa ]
consensusID : consensus_11148#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 71 fasta sequence
[CATTCTCACTTTCATAAATTAATGCCTTCGCTTCATTTCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF329644 [CATTCTCACTTTCATAAATTAATGCCTTCGCTTCATTTCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11148#0 TTTTGCTTACTCTCTCCGCCCTCCTAAACCCTACGACCATGCCGACCCTCGCCGCCGCCG 60
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 CCGCCGCCGCCCGCCGCGCCGGCGGGGCACTGCGATACGCCGTGCTGGGCGGGGTTCGGT 120
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 CGCTCTCATCCCTCCAGCCGTCATCCTCCTCCTCCGCCGCAGCCGCCGCCAGCGAGGAGG 180
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 TGCTGGTGGAAGGCAAGGCCAGCGCGCGCGCCGCCGTGCTCAACCGCCCCGGCCATCTCA 240
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 ACGCGCTCACGACCACCATGGGAGCTAGGCTCAATAAGTTTTATATGTCATGGGAGGACA 300
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 ACCCTGATATTGGCTTTGTCATGATGAAGGGCAGCGGCCGAGCATTCTGTGCTGGTGGGG 360
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 ATGTTGTTAGGTTGCACCAGCTTATAAGTGAAGGAAAGTTGGACGAGTGTAAGGATTTCT 420
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 TCAAGACTTTGTACAGTTTTATTTATGTTCTGGGCACATACTTGAAGCCACATGTTGCCA 480
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 TTCTTGATGGTGTTACCATGGGTGGAGGTGGAGGTGTTTCCATTCCCGGAACATTTCGCA 540
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 TTGTCACTGATAGAACGGTATTTGCAACTCCAGAAGTACATATTGGCTTCCATCCTGATG 600
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 CTGCTGCCTCCTTTTATTTGTCCCATCTGACTGGTCATGTTGGTGAATATTTGGCCTTGA 660
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 CTGGTGAAAAACTCAATGGAGTGGATATGATCGCACTTGGCCTTGCTACACACTATTCCA 720
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 TGAGTGATCGGTTGAATCTGGTTGATGAACGCCTTGCAACATTGTTAACTGATGATCCAT 780
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 CAGTTATTGATACTTCCCTTACACATTATGGAGATCTTGTGTATCCAGATAAGAGTAGCA 840
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 TTGTTCATAGGCTGGAGGTTATAGATAAATGTTTCAGCCTTGAAACAGTCGAGGAGATTG 900
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 TGGATGCCATGGAAATTGAAGCAGCTAGGTTAAATGAAGATTGGTCTACCTTGGCCCTGA 960
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 AACGGTTGAAAGAGGCTTCTCCTCTTGCGTTGAAAGTTTCACTGCGATCGATACGTGAAG 1020
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 GTAGATACCAGACACTTGATGAATGCCTTGTGCGTGAATACCGCATGTCTATCAATGGAA 1080
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 TCTCAGAGAAATTTTCTCATGAATTTCGTGAGGGTGTCAGAGCACGTCTTGTGGAGAAGG 1140
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 ACCTAGCTCCAAAGTGGGATCCACCTGCCCTTGAGTATGTATCAGCGGACATGGTCGATT 1200
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 CTTACTTTGCTCCCCTGGGTGAATTTGAGCCTGAGTTGACACTGCCTACTGAATCGCGAG 1260
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 AGGCATTTGTATGATGACTCTGCATGACAATTCCAAGTAGCGCTTTTGTTTGAAGCCTTA 1320
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 TAGATTTTTGAGCCCACACTGTCGACCGTTGGCAGCACATAATAACAGATAGGATTCTCA 1380
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 ATCTATTCTTGTACCATATATGCCTTGGTGTATTGAAAGGAACTGATCTCCAAGGTGAAC 1440
consensus_11148#1 ------------------------------------------------------------
consensus_11148#0 TCCTACCATTCTCACTTTCATAAATTAATGCCTTCGCTTCATTTCATTTATACTATGGCA 1500
consensus_11148#1 ------CATTCTCACTTTCATAAATTAATGCCTTCGCTTCATTTCATTTAAAAAAAAAAA 54
******************************************** * * *
consensus_11148#0 AAGCGTGTCCAAGTCGC 1517
consensus_11148#1 AAAAAAAAAAAAAAAAA 71
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||