cluster # 11153

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Oryza sativa
cluster # 11153 cluster # 11153 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11153#0 length = 504 sequences # 6

consensus_11153#1 length = 504 sequences # 1
consensus_11153#2 length = 474 sequences # 1

consensusID : consensus_11153#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 504
fasta sequence

                              [TGTCTCTGAATTTAACTAAATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAGCTTCGCGGCGGCGGAGGGAGG-AAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATC-GGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTT-ATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCGACAGTATTTACTATGTTGTTATAGATGCGGAGAATCCCATCAAAACAGTTACTGAAA-TTTGCTGTTCGTCAGG-G-TTCC-CGAAAAAAAAAA]

[+] EMBL AK062915             [TGTCTCTGAATTTAACTAAATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAGCTTCGCGGCGGCGGAGGGAGG AAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATC GGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTT ATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCGACAGTATTTACTATGTTGTTATAGATGCGGAGAATCCCATCAAA                                                  ]
[+] EMBL AU065905             [              ACTAAATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAGCTTCGCGGCGGCGGAGGGAGG AAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATC GGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTNTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTTAATGTTGTTATATTGATCATCGCCAACATCGAACCATTCAAGCGCCAGTANTTACTATGTTGTTATAGATGCGGGGAATCCCATCAAAACAGTTACTGAAA TTTGCTGTTCGTCAGG G TTCC CGAAAAAA    ]
[+] EMBL OSS13096A            [              ACTAAATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAGCTTCGCGGCGGCGGAGGGAGG AAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGNACAAGACGGAGAGCATGAGGGTGGAGATCANGAGCAGGCANGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATC GGCCGCCGNAACAAGCGGTTCTTCCTCGCCTTCTGATTTCTGATTCATAAGTTCATCACCATCGAGAATCCAAT                                                                                                                                                                ]
[+] EMBL AU174557             [                 AAATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAGCTTCNCGGCGGCGGAGGGAGGNAAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATC GGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTT ATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAA                                                                                                 ]
[+] EMBL AU102051             [                 AAATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAGCTTCGCGGCGGCGGAGGGAGG AAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATC GGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTT ATGTTGTTATATTGATCATCGCCAACA                                                                                                              ]
[+] EMBL AU198134             [                                                                                                                                     GAGG AAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTNGTCGCCGCCGACTCCATCGGGCCGCCGCAACAAGCGCTTNTTCCTCGCCTTNTGATTTNTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTT ATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCGACAGTATTTACTATGTTGTTATAGATGCGGAGAATCCCATCAAAACAGTTACTGAAATTTTGCTGTTNGTCAGGAGATTCCNCGAAAAAAAAAA]




>consensus_11153#0
TGTCTCTGAATTTAACTAAATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTC
AGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAGCTTC
GCGGCGGCGGAGGGAGGAAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACG
ACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGC
TCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCTTCTTCC
TCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAA
AATATATATTTATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCGACAGTA
TTTACTATGTTGTTATAGATGCGGAGAATCCCATCAAAACAGTTACTGAAATTTGCTGTT
CGTCAGGGTTCCCGAAAAAAAAAA

consensusID : consensus_11153#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence

                              [CCGGAGGGAGGAAGAAACGGGAGGAAGAAGGAGGCGCGCGGCGGCGATGATGACGTACGACACAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCACCATCGAATCCNATTAAGCACAAGAAAAAATATATTTTTGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCAACTATAATATGTTCGTTATAGATGCCGAGAATCCCATCCAATACAGTAACTGAAATTTTGCTGTTCGTCCAGGAGATTCCACGAAGAATTGTTACCGTGTTTGTGGATGGAGTGATATATATATATATACCATCCGTGTAATCGCCTATGTGTTTATTTGACTTGACTGTTCGTGAGAGAAGAGCCCNNCAAAAAGCTTAAGCTTTTCGATGAAAAAAA]

[+] EMBL BM420360             [CCGGAGGGAGGAAGAAACGGGAGGAAGAAGGAGGCGCGCGGCGGCGATGATGACGTACGACACAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCACCATCGAATCCNATTAAGCACAAGAAAAAATATATTTTTGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCAACTATAATATGTTCGTTATAGATGCCGAGAATCCCATCCAATACAGTAACTGAAATTTTGCTGTTCGTCCAGGAGATTCCACGAAGAATTGTTACCGTGTTTGTGGATGGAGTGATATATATATATATACCATCCGTGTAATCGCCTATGTGTTTATTTGACTTGACTGTTCGTGAGAGAAGAGCCCNNCAAAAAGCTTAAGCTTTTCGATGAAAAAAA]




>consensus_11153#1
CCGGAGGGAGGAAGAAACGGGAGGAAGAAGGAGGCGCGCGGCGGCGATGATGACGTACGA
CACAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGC
TCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCTTCTTCC
TCGCCTTCTGATTTCTGATTCATCACCATCGAATCCNATTAAGCACAAGAAAAAATATAT
TTTTGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCAACTATAATATGTTCG
TTATAGATGCCGAGAATCCCATCCAATACAGTAACTGAAATTTTGCTGTTCGTCCAGGAG
ATTCCACGAAGAATTGTTACCGTGTTTGTGGATGGAGTGATATATATATATATACCATCC
GTGTAATCGCCTATGTGTTTATTTGACTTGACTGTTCGTGAGAGAAGAGCCCNNCAAAAA
GCTTAAGCTTTTCGATGAAAAAAA

consensusID : consensus_11153#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 474
fasta sequence

                              [AATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAANTTCGCGGCGGCGGAGGGAGGAAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTTATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCGACAGTATTTACTATGTTGTTATAGATGCGGAGAATCCCATCAAAACAGTTACTGAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU102052             [AATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAANTTCGCGGCGGCGGAGGGAGGAAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTTATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCGACAGTATTTACTATGTTGTTATAGATGCGGAGAATCCCATCAAAACAGTTACTGAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11153#2
AATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGG
GGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAANTTCGCGGCGGCGGAGGGAGGAA
GACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGA
GAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGT
CGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGAT
TCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTTATGTTGTT
ATATTGATCATCGCCAACATCGAAACATTCAAGCGACAGTATTTACTATGTTGTTATAGA
TGCGGAGAATCCCATCAAAACAGTTACTGAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11153#0      TGTCTCTGAATTTAACTAAATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTC 60
consensus_11153#2      ------------------AATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTC 42
consensus_11153#1      ------------------------------------------------------------
                                                                                   

consensus_11153#0      AGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAGCTTC 120
consensus_11153#2      AGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAN-TTC 101
consensus_11153#1      ------------------------------------------------------------
                                                                                   

consensus_11153#0      GCGGCGGCGGAGGGAGGAAGACA-GGGAGGAAGAAGGAGGCG----GCGGCGATGATGAC 175
consensus_11153#2      GCGGCGGCGGAGGGAGGAAGACA-GGGAGGAAGAAGGAGGCG----GCGGCGATGATGAC 156
consensus_11153#1      ------CCGGAGGGAGGAAGAAACGGGAGGAAGAAGGAGGCGCGCGGCGGCGATGATGAC 54
                              ************** * ******************    **************

consensus_11153#0      GTACGACA-AGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGC 234
consensus_11153#2      GTACGACA-AGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGC 215
consensus_11153#1      GTACGACACAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGC 114
                       ******** ***************************************************

consensus_11153#0      AGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCT 294
consensus_11153#2      AGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCT 275
consensus_11153#1      AGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCT 174
                       ************************************************************

consensus_11153#0      TCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGC 354
consensus_11153#2      TCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGC 335
consensus_11153#1      TCTTCCTCGCCTTCTGATTTCTGATTCA--------TCACCATCGA--ATCCNATTAAGC 224
                       ****************************        **********  **** *******

consensus_11153#0      A-AACAAAATATATATTTATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGC 413
consensus_11153#2      A-AACAAAATATATATTTATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGC 394
consensus_11153#1      ACAAGAAAAAATATATTTTTGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGC 284
                       * ** **** ******** *****************************************

consensus_11153#0      GACAGTATTTACTATGTT-GTTATAGATGCGGAGAATCCCATCAAA-ACAGTTACTGAAA 471
consensus_11153#2      GACAGTATTTACTATGTT-GTTATAGATGCGGAGAATCCCATCAAA-ACAGTTACTGAAA 452
consensus_11153#1      AAC----TATAATATGTTCGTTATAGATGCCGAGAATCCCATCCAATACAGTAACTGAAA 340
                        **    * ** ****** *********** ************ ** ***** *******

consensus_11153#0      TTT-GCTGTTCGTCAGGGTTCCCGAAAAAAAAAA-------------------------- 504
consensus_11153#2      AA------------AAAAAAAAAAAAAAAAAAAA-------------------------- 474
consensus_11153#1      TTTTGCTGTTCGTCCAGGAGATTCCACGAAGAATTGTTACCGTGTTTGTGGATGGAGTGA 400
                                                *  ** **                           

consensus_11153#0      ------------------------------------------------------------
consensus_11153#2      ------------------------------------------------------------
consensus_11153#1      TATATATATATATACCATCCGTGTAATCGCCTATGTGTTTATTTGACTTGACTGTTCGTG 460
                                                                                   

consensus_11153#0      --------------------------------------------
consensus_11153#2      --------------------------------------------
consensus_11153#1      AGAGAAGAGCCCNNCAAAAAGCTTAAGCTTTTCGATGAAAAAAA 504